9130015A21Rik (RIKEN cDNA 9130015A21 gene) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: 9130015A21Rik (RIKEN cDNA 9130015A21 gene) Mus musculus
Analyze
Symbol: 9130015A21Rik
Name: RIKEN cDNA 9130015A21 gene
RGD ID: 1623945
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: 100043575; Gm4527; hypothetical protein LOC71581; predicted gene 4527
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391235,722,289 - 35,745,117 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1235,722,281 - 35,745,117 (-)EnsemblGRCm39 Ensembl
GRCm381235,672,290 - 35,695,118 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1235,672,282 - 35,695,118 (-)EnsemblGRCm38mm10GRCm38
MGSCv371236,356,962 - 36,370,976 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361233,518,927 - 33,544,676 (-)NCBIMGSCv36mm8
Celera1237,127,486 - 37,141,466 (-)NCBICelera
Cytogenetic Map12A3NCBI
cM Map1215.82NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12040188   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in 9130015A21Rik
813 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
1301163Eae16_msusceptibility to experimental allergic encephalomyelitis 16 (mouse)Not determined12772315841723301Mouse
13208568Bmiq11_mbody mass index QTL 11 (mouse)12805000040049999Mouse
1301037Cd4ts5_mCD4 T cell subset 5 (mouse)Not determined12835244442352581Mouse
1301723Fcsa7_mfemoral cross-sectional area 7 (mouse)Not determined12949100443491112Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
14746972Manh72_mmandible shape 72 (mouse)121061528144615281Mouse
10401249Bglu15_mblood glucose level 15 (mouse)Not determined121062064244620809Mouse
13524843Ppiq8_mprepulse inhibition QTL 8 (mouse)121104319450945796Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
4141516slwr_mslowlearner (mouse)Not determined1239247546392614Mouse
13524839Ppiq10_mprepulse inhibition QTL 10 (mouse)121304319554945798Mouse
10043977Obq34_mobesity QTL 34 (mouse)Not determined121514733149147331Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
26884413Bzwq9_mbi-zygomatic width QTL 9, 10 week (mouse)121615000147746783Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
15039339Nmrs29_mNAFLD-associated magnetic resonance shift 29 (mouse)121782585251825852Mouse
10043848Hdlq90_mHDL QTL 90 (mouse)Not determined121783993951840081Mouse
1300870Ath18_matherosclerosis 18 (mouse)Not determined121825996652260067Mouse
12904956Edlmmq10_mextensor digitorum longus muscle mass QTL 10 (mouse)121973983353739833Mouse
1302172Skts5_mskin tumor susceptibility 5 (mouse)Not determined122214886656149016Mouse
1301989Hdlq18_mHDL QTL 18 (mouse)Not determined122916068563160884Mouse
1300636Gct2_mgranulosa cell tumorigenesis 2 (mouse)Not determined122916068563160884Mouse
4141843Moen3_mmodifier of engrailed QTL 3 (mouse)Not determined122980158463801733Mouse
14747008Mancz10_mmandible centroid size 10 (mouse)122986352263863522Mouse
10402492Dipa8_mdrug induced psychomotor activation 8 (mouse)Not determined123493387268934019Mouse
1300818Bbaa10_mB.burgdorferi-associated arthritis 10 (mouse)Not determined123509100465511019Mouse
12879483Asp1_maudiogenic seizure prone 1 (mouse)123528549646801733Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000221491
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1235,722,281 - 35,724,502 (-)Ensembl
GRCm38.p6 Ensembl1235,672,282 - 35,674,503 (-)Ensembl
RefSeq Acc Id: ENSMUST00000222153
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1235,722,379 - 35,745,117 (-)Ensembl
GRCm38.p6 Ensembl1235,672,380 - 35,695,118 (-)Ensembl
RefSeq Acc Id: ENSMUST00000222894
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1235,722,289 - 35,736,303 (-)Ensembl
GRCm38.p6 Ensembl1235,672,290 - 35,686,304 (-)Ensembl
RefSeq Acc Id: NR_045050
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391235,722,289 - 35,745,117 (-)NCBI
GRCm381235,672,290 - 35,695,118 (-)ENTREZGENE
Celera1237,127,486 - 37,150,292 (-)ENTREZGENE
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_045051
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391235,722,289 - 35,736,303 (-)NCBI
GRCm381235,672,290 - 35,686,304 (-)NCBI
Celera1237,127,486 - 37,150,292 (-)ENTREZGENE
cM Map12 ENTREZGENE
Sequence:
Protein Sequences
GenBank Protein EDL36861 (Get FASTA)   NCBI Sequence Viewer  

Promoters
RGD ID:15094094
Promoter ID:EPDNEWNC_M2002
Type:single initiation site
Name:9130015A21Rik_1
Description:RIKEN cDNA 9130015A21 gene [Source:MGISymbol;Acc:MGI:1918831]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381235,686,261 - 35,686,321EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000113985 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000222153 ENTREZGENE
  ENSMUST00000222894 ENTREZGENE
MGD MGI:1918831 ENTREZGENE
NCBI Gene 71581 ENTREZGENE
PhenoGen 9130015A21Rik PhenoGen
RNAcentral URS000075B156 RNACentral
  URS000075BCA8 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-24 9130015A21Rik  RIKEN cDNA 9130015A21 gene  Gm4527  predicted gene 4527  Data merged from RGD:2307694 737654 PROVISIONAL