Gpcpd1 (glycerophosphocholine phosphodiesterase 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Gpcpd1 (glycerophosphocholine phosphodiesterase 1) Mus musculus
Analyze
Symbol: Gpcpd1
Name: glycerophosphocholine phosphodiesterase 1
RGD ID: 1623926
MGI Page MGI
Description: Enables glycerophosphocholine phosphodiesterase activity. Acts upstream of or within skeletal muscle tissue development. Located in cytoplasm. Is expressed in early conceptus; primary oocyte; secondary oocyte; and testis. Orthologous to human GPCPD1 (glycerophosphocholine phosphodiesterase 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2310004G06Rik; 2310032D16Rik; AU015213; Gde5; glycerophosphocholine phosphodiesterase GDE1 homolog; glycerophosphocholine phosphodiesterase GPCPD1; glycerophosphodiester phosphodiesterase 5; mKIAA1434; Pr; Prei4; preimplantation protein 4; putative glycerophosphocholine phosphodiesterase GPCPD1; putative glycerophosphodiester phosphodiesterase 5
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392132,371,002 - 132,420,173 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2132,371,002 - 132,429,649 (-)EnsemblGRCm39 Ensembl
GRCm382132,529,082 - 132,578,248 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2132,529,082 - 132,587,729 (-)EnsemblGRCm38mm10GRCm38
MGSCv372132,354,819 - 132,403,984 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362132,220,839 - 132,269,619 (-)NCBIMGSCv36mm8
Celera2133,755,816 - 133,804,873 (-)NCBICelera
Cytogenetic Map2F2NCBI
cM Map264.57NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
3,3',5-triiodo-L-thyronine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-methylcholanthrene  (EXP)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxyphenyl retinamide  (EXP)
Acetyl tributyl citrate  (EXP)
acrylamide  (EXP,ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
Benzo[k]fluoranthene  (EXP)
bisphenol A  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
cantharidin  (EXP)
carbamazepine  (ISO)
carbon nanotube  (EXP)
chlordecone  (EXP)
chlorpyrifos  (EXP)
choline  (EXP)
chromium(6+)  (EXP)
cisplatin  (ISO)
clofibrate  (EXP)
clothianidin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (EXP,ISO)
cyanocob(III)alamin  (EXP)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dioxygen  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP,ISO)
ethyl methanesulfonate  (ISO)
folic acid  (EXP,ISO)
formaldehyde  (ISO)
FR900359  (ISO)
furan  (EXP)
genistein  (EXP)
glycine betaine  (EXP,ISO)
indometacin  (ISO)
isoprenaline  (EXP)
L-methionine  (EXP)
leflunomide  (ISO)
maneb  (EXP)
methapyrilene  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
nickel atom  (ISO)
oxaliplatin  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
parathion  (EXP)
perfluorononanoic acid  (ISO)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP)
pregnenolone 16alpha-carbonitrile  (EXP)
prothioconazole  (ISO)
rac-lactic acid  (ISO)
resorcinol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
senecionine  (EXP)
sodium arsenite  (ISO)
sunitinib  (ISO)
tamoxifen  (EXP)
tetrachloromethane  (EXP)
tetraphene  (EXP)
thimerosal  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
trichloroethene  (EXP)
triptonide  (EXP)
urethane  (ISO)
valdecoxib  (ISO)
valproic acid  (ISO)
zinc atom  (EXP)
zinc(0)  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IDA)
cytosol  (TAS)

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7545925   PMID:8889548   PMID:9155731   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12693553  
PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:18799693   PMID:19501643   PMID:20576599   PMID:21267068   PMID:21873635   PMID:24373430   PMID:30462540   PMID:38238601  


Genomics

Comparative Map Data
Gpcpd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392132,371,002 - 132,420,173 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2132,371,002 - 132,429,649 (-)EnsemblGRCm39 Ensembl
GRCm382132,529,082 - 132,578,248 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2132,529,082 - 132,587,729 (-)EnsemblGRCm38mm10GRCm38
MGSCv372132,354,819 - 132,403,984 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362132,220,839 - 132,269,619 (-)NCBIMGSCv36mm8
Celera2133,755,816 - 133,804,873 (-)NCBICelera
Cytogenetic Map2F2NCBI
cM Map264.57NCBI
GPCPD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38205,544,439 - 5,611,006 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl205,544,439 - 5,611,006 (-)EnsemblGRCh38hg38GRCh38
GRCh37205,525,085 - 5,591,652 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36205,473,080 - 5,539,672 (-)NCBINCBI36Build 36hg18NCBI36
Celera205,595,915 - 5,663,197 (-)NCBICelera
Cytogenetic Map20p12.3NCBI
HuRef205,480,738 - 5,547,293 (-)NCBIHuRef
CHM1_1205,525,789 - 5,592,376 (-)NCBICHM1_1
T2T-CHM13v2.0205,585,120 - 5,651,341 (-)NCBIT2T-CHM13v2.0
Gpcpd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83140,240,574 - 140,285,469 (-)NCBIGRCr8
mRatBN7.23119,787,681 - 119,832,550 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3119,787,682 - 119,832,517 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3123,684,043 - 123,728,434 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03132,285,068 - 132,329,435 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03129,940,164 - 129,984,559 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03125,169,131 - 125,213,598 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3125,169,135 - 125,213,607 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03131,661,587 - 131,706,004 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43120,301,433 - 120,347,942 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13120,207,009 - 120,253,515 (-)NCBI
Celera3118,577,563 - 118,640,064 (-)NCBICelera
Cytogenetic Map3q36NCBI
Gpcpd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541516,060,931 - 16,118,059 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541516,062,068 - 16,118,029 (-)NCBIChiLan1.0ChiLan1.0
GPCPD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2216,474,795 - 6,541,510 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1206,473,823 - 6,538,335 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0205,547,190 - 5,613,849 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1205,336,003 - 5,397,458 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl205,336,003 - 5,397,448 (-)Ensemblpanpan1.1panPan2
GPCPD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12416,153,622 - 16,203,155 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2416,148,035 - 16,220,757 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2415,970,494 - 16,025,121 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02416,551,569 - 16,606,256 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2416,539,682 - 16,606,242 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12416,157,889 - 16,212,499 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02416,266,343 - 16,320,996 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02416,597,821 - 16,652,719 (+)NCBIUU_Cfam_GSD_1.0
Gpcpd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640164,970,221 - 165,026,770 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648513,400,995 - 13,458,146 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648513,401,598 - 13,458,125 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPCPD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1714,420,658 - 14,476,212 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11714,420,656 - 14,476,223 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21715,458,697 - 15,510,302 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GPCPD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1232,522,953 - 32,585,204 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl232,523,236 - 32,584,184 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607111,949,561 - 12,013,632 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gpcpd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247416,472,558 - 6,528,865 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247416,472,558 - 6,529,698 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gpcpd1
2016 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4212
Count of miRNA genes:727
Interacting mature miRNAs:912
Transcripts:ENSMUST00000028822, ENSMUST00000060955, ENSMUST00000110135, ENSMUST00000110136, ENSMUST00000110142, ENSMUST00000124107, ENSMUST00000124632, ENSMUST00000127712, ENSMUST00000131617, ENSMUST00000140867, ENSMUST00000145694, ENSMUST00000148833, ENSMUST00000149854
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
4141155Plast2b_mplasma plant sterol 2b (mouse)Not determined284013198148522175Mouse
10412082Hylaq1_mHyperlocomotor activity related QTL 1 (mouse)Not determined284013198148667470Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
27226761Feml18_mfemur length 18, 16 week (mouse)294230345154241920Mouse
4141802Ignpq1_mIgA nephropathy QTL 1 (mouse)Not determined2100824060134824269Mouse
1302203Gvhd3_mgraft-versus host disease 3 (mouse)Not determined2100942930134943090Mouse
1301330Tbbmd2_mtotal body bone mineral density 2 (mouse)Not determined2100942930134943090Mouse
1302071Fembrs1_mfemur breaking strength 1 (mouse)Not determined2100942930134943090Mouse
27226788Feml13_mfemur length 13, 10 week (mouse)2102630345159941920Mouse
11038702Ltpr2_mLeishmania tropica response 2 (mouse)2103095716167212356Mouse
1301825Pbrgcsf1_mperipheral blood stem cell response to granulocyte colony stimulating factor 1 (mouse)Not determined2106233580140233729Mouse
10043875Bw25_mbody weight QTL 25 (mouse)Not determined2107255676141255676Mouse
1301087Bbaa15_mB.burgdorferi-associated arthritis 15 (mouse)Not determined2110489658144489807Mouse
10045885Cplaq15_mcircadian period of locomotor activity 15 (mouse)Not determined2110916118154354667Mouse
1558990Skmw9_mskeletal muscle weight 9 (mouse)Not determined2111173704145173821Mouse
1300793Pcfm2_mperiosteal circumference and femur length 2 (mouse)Not determined2111173704145173821Mouse
1301905Lgth2_mbody length 2 (mouse)Not determined2111173704145173821Mouse
1301755Hrq1_mheart rate quantitative locus 1 (mouse)Not determined2111173704145173821Mouse
1301201Chab1_mcholesterol absorption 1 (mouse)Not determined2111551028145551163Mouse
1302033Nsv1_mNeuroadapted Sindbis viral RNA level 1 (mouse)Not determined2111623386145623526Mouse
11039520Ltpr2h_mLeishmania tropica response 2h (mouse)2112212746146213005Mouse
11038699Ltpr2b_mLeishmania tropica response 2b (mouse)2112212746146213005Mouse
11038700Ltpr2a_mLeishmania tropica response 2a (mouse)2112212746146213005Mouse
1301029T2dm3_mtype 2 diabetes mellitus 3 (mouse)Not determined2114288075132714157Mouse
11039521Ltpr2g_mLeishmania tropica response 2g (mouse)2115212857149212994Mouse
11038696Ltpr2f_mLeishmania tropica response 2f (mouse)2115212857149212994Mouse
1301295Prdt1_mprion disease incubation time 1 (mouse)Not determined2116077623150077741Mouse
1558881Ses7_msalmonella enteritidis susceptibility 7 (mouse)Not determined2116306330150306474Mouse
1301618Bglu1_mblood glucose level 1 (mouse)Not determined2117942930174324863Mouse
12910795Pwbwq5_mpost-weaning body weight QTL 5 (mouse)2118589253160611165Mouse
12910799Pwgrq2_mpre-weaning growth rate QTL 2 (mouse)2118589253160611165Mouse
12910812Pwgrq1_mpre-weaning growth rate QTL 1 (mouse)2118589253160611165Mouse
12910814Pwbwq1_mpre-weaning body weight QTL 1 (mouse)2118589253160611165Mouse
1300712El2_mepilepsy 2 (mouse)Not determined2122207146142532135Mouse
1301294Hrtfm5_mheart failure modifier 5 (mouse)Not determined2122883015156883131Mouse
1301066Otx2m2_morthodenticle homolog 2 (Drosophila) modifier 2 (mouse)Not determined2123231973148700377Mouse
1301822Pgia2_mproteoglycan induced arthritis 2 (mouse)Not determined2123937311157937424Mouse
27226749Femd10_mfemur midshaft diameter 10, 16 week (mouse)2124441920168241920Mouse
13506763Tbvq1_mtrabecular bone volume QTL 1 (mouse)2126041920135441920Mouse
1302143Bwq5_mbody weight (mouse)Not determined2127664019161664118Mouse
1301031Bdln3_mbody length 3 (mouse)Not determined2127664019161664118Mouse
1558989Gnf4_mgrowth and fatness 4 (mouse)Not determined2128173704132714157Mouse
12880427V25Dq3_mvitamin D inactive form serum level QTL 3 (mouse)2129341920163341920Mouse
13207586Mwmlpt2_mMorris water maze latency to platform, training, 2 (mouse)2131616184139216184Mouse
13207590Mwmlpa2_mMorris water maze latency to platform, all, 2 (mouse)2131616184139616184Mouse
1301961Bts1_mbladder tumor susceptibility 1 (mouse)Not determined2132024159166024330Mouse

Markers in Region
BB164963  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382132,559,135 - 132,559,241UniSTSGRCm38
MGSCv372132,384,871 - 132,384,977UniSTSGRCm37
Celera2133,785,744 - 133,785,850UniSTS
Cytogenetic Map2F3UniSTS
Whitehead/MRC_RH21639.75UniSTS
AU015213  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382132,529,184 - 132,529,385UniSTSGRCm38
MGSCv372132,354,920 - 132,355,121UniSTSGRCm37
Celera2133,755,917 - 133,756,118UniSTS
Cytogenetic Map2F3UniSTS
Whitehead/MRC_RH121002.4UniSTS
Prei4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2F3UniSTS
cM MapUN UniSTS
cM Map2 UniSTS
MARC_12069-12070:1004549810:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382132,534,144 - 132,534,758UniSTSGRCm38
MGSCv372132,359,880 - 132,360,494UniSTSGRCm37
Celera2133,760,877 - 133,761,491UniSTS
Cytogenetic Map2F3UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001042672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001355648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001355649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001355650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001355651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001355652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_027096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_028802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006500276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006500277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006500279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006500280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003953727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003953728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK009137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK009563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK050318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK122510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK141374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL807386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW125284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC033408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U01136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000028822   ⟹   ENSMUSP00000028822
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2132,374,646 - 132,420,053 (-)Ensembl
GRCm38.p6 Ensembl2132,532,726 - 132,578,133 (-)Ensembl
RefSeq Acc Id: ENSMUST00000060955   ⟹   ENSMUSP00000062221
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2132,371,002 - 132,420,153 (-)Ensembl
GRCm38.p6 Ensembl2132,529,082 - 132,578,233 (-)Ensembl
RefSeq Acc Id: ENSMUST00000110135   ⟹   ENSMUSP00000105762
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2132,395,877 - 132,429,649 (-)Ensembl
GRCm38.p6 Ensembl2132,553,957 - 132,587,729 (-)Ensembl
RefSeq Acc Id: ENSMUST00000110136   ⟹   ENSMUSP00000105763
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2132,371,002 - 132,420,107 (-)Ensembl
GRCm38.p6 Ensembl2132,529,082 - 132,578,187 (-)Ensembl
RefSeq Acc Id: ENSMUST00000110142   ⟹   ENSMUSP00000105769
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2132,371,003 - 132,420,168 (-)Ensembl
GRCm38.p6 Ensembl2132,529,083 - 132,578,248 (-)Ensembl
RefSeq Acc Id: ENSMUST00000124107   ⟹   ENSMUSP00000122751
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2132,392,382 - 132,420,107 (-)Ensembl
GRCm38.p6 Ensembl2132,550,462 - 132,578,187 (-)Ensembl
RefSeq Acc Id: ENSMUST00000124632   ⟹   ENSMUSP00000117217
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2132,376,072 - 132,380,047 (-)Ensembl
GRCm38.p6 Ensembl2132,534,152 - 132,538,127 (-)Ensembl
RefSeq Acc Id: ENSMUST00000127712
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2132,371,002 - 132,383,951 (-)Ensembl
GRCm38.p6 Ensembl2132,529,082 - 132,542,031 (-)Ensembl
RefSeq Acc Id: ENSMUST00000131617
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2132,406,547 - 132,420,166 (-)Ensembl
GRCm38.p6 Ensembl2132,564,627 - 132,578,246 (-)Ensembl
RefSeq Acc Id: ENSMUST00000140867
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2132,395,989 - 132,420,137 (-)Ensembl
GRCm38.p6 Ensembl2132,554,069 - 132,578,217 (-)Ensembl
RefSeq Acc Id: ENSMUST00000145694   ⟹   ENSMUSP00000116457
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2132,371,002 - 132,420,168 (-)Ensembl
GRCm38.p6 Ensembl2132,529,082 - 132,578,248 (-)Ensembl
RefSeq Acc Id: ENSMUST00000148833   ⟹   ENSMUSP00000116156
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2132,371,002 - 132,420,098 (-)Ensembl
GRCm38.p6 Ensembl2132,529,082 - 132,578,178 (-)Ensembl
RefSeq Acc Id: ENSMUST00000149854   ⟹   ENSMUSP00000116949
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2132,371,002 - 132,420,155 (-)Ensembl
GRCm38.p6 Ensembl2132,529,082 - 132,578,235 (-)Ensembl
RefSeq Acc Id: NM_001042672   ⟹   NP_001036137
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392132,374,645 - 132,420,168 (-)NCBI
GRCm382132,532,725 - 132,578,248 (-)NCBI
MGSCv372132,354,819 - 132,403,984 (-)RGD
Celera2133,755,815 - 133,804,873 (-)NCBI
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001291050   ⟹   NP_001277979
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392132,371,002 - 132,420,168 (-)NCBI
GRCm382132,529,082 - 132,578,248 (-)NCBI
Celera2133,755,815 - 133,804,873 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001291051   ⟹   NP_001277980
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392132,371,002 - 132,420,168 (-)NCBI
GRCm382132,529,082 - 132,578,248 (-)NCBI
Celera2133,755,815 - 133,804,873 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001291052   ⟹   NP_001277981
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392132,371,002 - 132,420,168 (-)NCBI
GRCm382132,529,082 - 132,578,248 (-)NCBI
Celera2133,755,815 - 133,804,873 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001355648   ⟹   NP_001342577
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392132,371,002 - 132,420,168 (-)NCBI
GRCm382132,529,082 - 132,578,248 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001355649   ⟹   NP_001342578
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392132,371,002 - 132,420,168 (-)NCBI
GRCm382132,529,082 - 132,578,248 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001355650   ⟹   NP_001342579
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392132,371,002 - 132,420,168 (-)NCBI
GRCm382132,529,082 - 132,578,248 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001355651   ⟹   NP_001342580
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392132,371,002 - 132,420,168 (-)NCBI
GRCm382132,529,082 - 132,578,248 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001355652   ⟹   NP_001342581
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392132,371,002 - 132,420,168 (-)NCBI
GRCm382132,529,082 - 132,578,248 (-)NCBI
Sequence:
RefSeq Acc Id: NM_027096   ⟹   NP_081372
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392132,371,002 - 132,420,168 (-)NCBI
GRCm382132,529,082 - 132,578,248 (-)NCBI
Celera2133,755,815 - 133,804,873 (-)NCBI
Sequence:
RefSeq Acc Id: NM_028802   ⟹   NP_083078
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392132,371,002 - 132,420,168 (-)NCBI
GRCm382132,529,082 - 132,578,248 (-)NCBI
MGSCv372132,354,819 - 132,403,984 (-)RGD
Celera2133,755,815 - 133,804,873 (-)NCBI
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006500276   ⟹   XP_006500339
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392132,371,003 - 132,420,173 (-)NCBI
GRCm382132,529,083 - 132,578,157 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006500277   ⟹   XP_006500340
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392132,371,003 - 132,420,077 (-)NCBI
GRCm382132,529,083 - 132,578,155 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006500279   ⟹   XP_006500342
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392132,371,003 - 132,420,077 (-)NCBI
GRCm382132,529,083 - 132,578,157 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006500280   ⟹   XP_006500343
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392132,371,003 - 132,420,077 (-)NCBI
GRCm382132,529,083 - 132,578,157 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017319293   ⟹   XP_017174782
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392132,371,003 - 132,420,077 (-)NCBI
GRCm382132,529,083 - 132,578,155 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252130   ⟹   XP_030107990
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392132,371,003 - 132,420,077 (-)NCBI
GRCm382132,529,083 - 132,578,157 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252131   ⟹   XP_030107991
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392132,371,003 - 132,420,077 (-)NCBI
GRCm382132,529,083 - 132,578,155 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252132   ⟹   XP_030107992
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392132,371,003 - 132,420,129 (-)NCBI
GRCm382132,529,083 - 132,578,209 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003953727
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392132,376,638 - 132,420,143 (-)NCBI
GRCm382132,534,718 - 132,578,212 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003953728
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392132,376,638 - 132,420,157 (-)NCBI
GRCm382132,534,718 - 132,578,234 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001036137 (Get FASTA)   NCBI Sequence Viewer  
  NP_001277979 (Get FASTA)   NCBI Sequence Viewer  
  NP_001277980 (Get FASTA)   NCBI Sequence Viewer  
  NP_001277981 (Get FASTA)   NCBI Sequence Viewer  
  NP_001342577 (Get FASTA)   NCBI Sequence Viewer  
  NP_001342578 (Get FASTA)   NCBI Sequence Viewer  
  NP_001342579 (Get FASTA)   NCBI Sequence Viewer  
  NP_001342580 (Get FASTA)   NCBI Sequence Viewer  
  NP_001342581 (Get FASTA)   NCBI Sequence Viewer  
  NP_081372 (Get FASTA)   NCBI Sequence Viewer  
  NP_083078 (Get FASTA)   NCBI Sequence Viewer  
  XP_006500339 (Get FASTA)   NCBI Sequence Viewer  
  XP_006500340 (Get FASTA)   NCBI Sequence Viewer  
  XP_006500342 (Get FASTA)   NCBI Sequence Viewer  
  XP_006500343 (Get FASTA)   NCBI Sequence Viewer  
  XP_017174782 (Get FASTA)   NCBI Sequence Viewer  
  XP_030107990 (Get FASTA)   NCBI Sequence Viewer  
  XP_030107991 (Get FASTA)   NCBI Sequence Viewer  
  XP_030107992 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH33408 (Get FASTA)   NCBI Sequence Viewer  
  BAB26361 (Get FASTA)   NCBI Sequence Viewer  
  BAC27063 (Get FASTA)   NCBI Sequence Viewer  
  BAC33775 (Get FASTA)   NCBI Sequence Viewer  
  BAC34739 (Get FASTA)   NCBI Sequence Viewer  
  BAC65792 (Get FASTA)   NCBI Sequence Viewer  
  BAE38686 (Get FASTA)   NCBI Sequence Viewer  
  EDL28353 (Get FASTA)   NCBI Sequence Viewer  
  EDL28354 (Get FASTA)   NCBI Sequence Viewer  
  EDL28355 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000028822.8
  ENSMUSP00000062221
  ENSMUSP00000062221.6
  ENSMUSP00000105762.2
  ENSMUSP00000105763
  ENSMUSP00000105763.2
  ENSMUSP00000105769
  ENSMUSP00000105769.2
  ENSMUSP00000116156.2
  ENSMUSP00000116457.2
  ENSMUSP00000116949.2
  ENSMUSP00000117217.2
  ENSMUSP00000122751.2
GenBank Protein Q8C0L9 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_083078   ⟸   NM_028802
- Peptide Label: isoform 2
- UniProtKB: Q8CFW2 (UniProtKB/Swiss-Prot),   Q8BKW7 (UniProtKB/Swiss-Prot),   Q8BKJ7 (UniProtKB/Swiss-Prot),   Q80TD5 (UniProtKB/Swiss-Prot),   Q3TLV6 (UniProtKB/Swiss-Prot),   A2AMD5 (UniProtKB/Swiss-Prot),   Q9D759 (UniProtKB/Swiss-Prot),   Q8C0L9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001036137   ⟸   NM_001042672
- Peptide Label: isoform 3
- Sequence:
RefSeq Acc Id: XP_006500343   ⟸   XM_006500280
- Peptide Label: isoform X1
- UniProtKB: B0R058 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006500342   ⟸   XM_006500279
- Peptide Label: isoform X1
- UniProtKB: B0R058 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006500339   ⟸   XM_006500276
- Peptide Label: isoform X1
- UniProtKB: B0R058 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006500340   ⟸   XM_006500277
- Peptide Label: isoform X1
- UniProtKB: B0R058 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_081372   ⟸   NM_027096
- Peptide Label: isoform 1
- UniProtKB: B0R058 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001277981   ⟸   NM_001291052
- Peptide Label: isoform 1
- UniProtKB: B0R058 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001277979   ⟸   NM_001291050
- Peptide Label: isoform 1
- UniProtKB: B0R058 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001277980   ⟸   NM_001291051
- Peptide Label: isoform 1
- UniProtKB: B0R058 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017174782   ⟸   XM_017319293
- Peptide Label: isoform X1
- UniProtKB: B0R058 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001342581   ⟸   NM_001355652
- Peptide Label: isoform 5
- UniProtKB: B0R058 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001342579   ⟸   NM_001355650
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001342577   ⟸   NM_001355648
- Peptide Label: isoform 1
- UniProtKB: B0R058 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001342580   ⟸   NM_001355651
- Peptide Label: isoform 2
- UniProtKB: Q8CFW2 (UniProtKB/Swiss-Prot),   Q8C0L9 (UniProtKB/Swiss-Prot),   Q8BKW7 (UniProtKB/Swiss-Prot),   Q8BKJ7 (UniProtKB/Swiss-Prot),   Q80TD5 (UniProtKB/Swiss-Prot),   Q3TLV6 (UniProtKB/Swiss-Prot),   A2AMD5 (UniProtKB/Swiss-Prot),   Q9D759 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001342578   ⟸   NM_001355649
- Peptide Label: isoform 4
RefSeq Acc Id: XP_030107992   ⟸   XM_030252132
- Peptide Label: isoform X2
- UniProtKB: B0R058 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030107990   ⟸   XM_030252130
- Peptide Label: isoform X1
- UniProtKB: B0R058 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030107991   ⟸   XM_030252131
- Peptide Label: isoform X1
- UniProtKB: B0R058 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000117217   ⟸   ENSMUST00000124632
RefSeq Acc Id: ENSMUSP00000122751   ⟸   ENSMUST00000124107
RefSeq Acc Id: ENSMUSP00000105762   ⟸   ENSMUST00000110135
RefSeq Acc Id: ENSMUSP00000105763   ⟸   ENSMUST00000110136
RefSeq Acc Id: ENSMUSP00000105769   ⟸   ENSMUST00000110142
RefSeq Acc Id: ENSMUSP00000028822   ⟸   ENSMUST00000028822
RefSeq Acc Id: ENSMUSP00000116457   ⟸   ENSMUST00000145694
RefSeq Acc Id: ENSMUSP00000116949   ⟸   ENSMUST00000149854
RefSeq Acc Id: ENSMUSP00000116156   ⟸   ENSMUST00000148833
RefSeq Acc Id: ENSMUSP00000062221   ⟸   ENSMUST00000060955
Protein Domains
CBM20   GP-PDE

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8C0L9-F1-model_v2 AlphaFold Q8C0L9 1-675 view protein structure

Promoters
RGD ID:6832120
Promoter ID:MM_KWN:31853
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4,   Brain,   Lung
Transcripts:OTTMUST00000037205
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362132,366,261 - 132,368,562 (-)MPROMDB
RGD ID:6831457
Promoter ID:MM_KWN:31856
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000028822,   ENSMUST00000060955,   NM_001042671,   NM_001042672,   OTTMUST00000037200,   OTTMUST00000037206,   OTTMUST00000037207,   OTTMUST00000037208,   UC008MMY.1,   UC008MMZ.1,   UC008MNA.1,   UC008MNC.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362132,403,694 - 132,404,194 (-)MPROMDB
RGD ID:6878856
Promoter ID:EPDNEW_M2879
Type:single initiation site
Name:Gpcpd1_2
Description:Mus musculus glycerophosphocholine phosphodiesterase 1 , transcriptvariant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2880  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382132,574,145 - 132,574,205EPDNEW
RGD ID:6878858
Promoter ID:EPDNEW_M2880
Type:initiation region
Name:Gpcpd1_1
Description:Mus musculus glycerophosphocholine phosphodiesterase 1 , transcriptvariant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2879  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382132,578,212 - 132,578,272EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:104898 AgrOrtholog
Ensembl Genes ENSMUSG00000027346 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000028822.14 UniProtKB/TrEMBL
  ENSMUST00000060955 ENTREZGENE
  ENSMUST00000060955.12 UniProtKB/Swiss-Prot
  ENSMUST00000110135.3 UniProtKB/TrEMBL
  ENSMUST00000110136 ENTREZGENE
  ENSMUST00000110136.8 UniProtKB/Swiss-Prot
  ENSMUST00000110142 ENTREZGENE
  ENSMUST00000110142.8 UniProtKB/Swiss-Prot
  ENSMUST00000124107.8 UniProtKB/TrEMBL
  ENSMUST00000124632.2 UniProtKB/TrEMBL
  ENSMUST00000145694.8 UniProtKB/TrEMBL
  ENSMUST00000148833.8 UniProtKB/TrEMBL
  ENSMUST00000149854.8 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.20.20.190 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Carb-bd-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CBM20_GPCPD1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CBM_fam20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GP_PDE_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PLC-like_Pdiesterase_TIM-brl UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:74182 UniProtKB/Swiss-Prot
MGD MGI:104898 ENTREZGENE
NCBI Gene 74182 ENTREZGENE
PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR22958:SF1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CBM_20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GDPD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gpcpd1 PhenoGen
PROSITE CBM20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GP_PDE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART CBM_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49452 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF51695 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2AMD5 ENTREZGENE
  A2AMD6_MOUSE UniProtKB/TrEMBL
  A2AMD7_MOUSE UniProtKB/TrEMBL
  B0R058 ENTREZGENE, UniProtKB/TrEMBL
  D6RGT7_MOUSE UniProtKB/TrEMBL
  D6RHB5_MOUSE UniProtKB/TrEMBL
  D6RHS8_MOUSE UniProtKB/TrEMBL
  F6YDB7_MOUSE UniProtKB/TrEMBL
  GPCP1_MOUSE UniProtKB/Swiss-Prot
  Q3TLV6 ENTREZGENE
  Q80TD5 ENTREZGENE
  Q8BKJ7 ENTREZGENE
  Q8BKW7 ENTREZGENE
  Q8C0L9 ENTREZGENE
  Q8CFW2 ENTREZGENE
  Q9D759 ENTREZGENE
UniProt Secondary A2AMD5 UniProtKB/Swiss-Prot
  Q3TLV6 UniProtKB/Swiss-Prot
  Q80TD5 UniProtKB/Swiss-Prot
  Q8BKJ7 UniProtKB/Swiss-Prot
  Q8BKW7 UniProtKB/Swiss-Prot
  Q8CFW2 UniProtKB/Swiss-Prot
  Q9D759 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-29 Gpcpd1  glycerophosphocholine phosphodiesterase 1    glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)  Symbol and/or name change 5135510 APPROVED