Cimip2c (ciliary microtubule inner protein 2C) - Rat Genome Database

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Gene: Cimip2c (ciliary microtubule inner protein 2C) Mus musculus
Analyze
Symbol: Cimip2c
Name: ciliary microtubule inner protein 2C
RGD ID: 1623917
MGI Page MGI
Description: Involved in flagellated sperm motility. Is active in axonemal A tubule inner sheath and sperm flagellum. Is expressed in central nervous system; femur; lung; and retina. Orthologous to human CIMIP2C (ciliary microtubule inner protein 2C).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1700001C02Rik; 1700047H18Rik; Fam166c; family with sequence similarity 166, member C; hypothetical protein LOC75434; RIKEN cDNA 1700001C02 gene; UPF0573 protein C2orf70 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39530,623,395 - 30,641,433 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl530,623,391 - 30,641,432 (+)EnsemblGRCm39 Ensembl
GRCm38530,466,029 - 30,484,089 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl530,466,047 - 30,484,088 (+)EnsemblGRCm38mm10GRCm38
MGSCv37530,768,450 - 30,786,460 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36530,742,658 - 30,760,668 (+)NCBIMGSCv36mm8
Celera527,944,260 - 27,962,270 (+)NCBICelera
Cytogenetic Map5B1NCBI
cM Map516.57NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073   PMID:16602821   PMID:18554416   PMID:21267068  
PMID:21677750   PMID:27914912   PMID:30973865   PMID:37295417   PMID:37989994   PMID:38355793  


Genomics

Comparative Map Data
Cimip2c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39530,623,395 - 30,641,433 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl530,623,391 - 30,641,432 (+)EnsemblGRCm39 Ensembl
GRCm38530,466,029 - 30,484,089 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl530,466,047 - 30,484,088 (+)EnsemblGRCm38mm10GRCm38
MGSCv37530,768,450 - 30,786,460 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36530,742,658 - 30,760,668 (+)NCBIMGSCv36mm8
Celera527,944,260 - 27,962,270 (+)NCBICelera
Cytogenetic Map5B1NCBI
cM Map516.57NCBI
CIMIP2C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38226,562,587 - 26,579,524 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl226,562,585 - 26,579,532 (+)EnsemblGRCh38hg38GRCh38
GRCh37226,785,455 - 26,802,392 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36226,638,985 - 26,655,899 (+)NCBINCBI36Build 36hg18NCBI36
Celera226,629,117 - 26,646,026 (+)NCBICelera
Cytogenetic Map2p23.3NCBI
HuRef226,524,922 - 26,541,831 (+)NCBIHuRef
CHM1_1226,715,533 - 26,732,444 (+)NCBICHM1_1
T2T-CHM13v2.0226,601,745 - 26,618,672 (+)NCBIT2T-CHM13v2.0
Cimip2c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8631,625,187 - 31,643,500 (-)NCBIGRCr8
mRatBN7.2625,905,294 - 25,923,615 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl625,905,294 - 25,923,615 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx626,197,967 - 26,216,277 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0626,513,848 - 26,532,158 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0625,992,822 - 26,011,126 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0627,305,402 - 27,323,992 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl627,305,402 - 27,323,992 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0637,117,774 - 37,136,364 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4625,889,215 - 25,908,084 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera625,383,869 - 25,401,938 (-)NCBICelera
Cytogenetic Map6q14NCBI
Cimip2c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554698,588,900 - 8,604,337 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554698,588,820 - 8,603,333 (+)NCBIChiLan1.0ChiLan1.0
CIMIP2C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21299,936,109 - 99,956,927 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A99,940,080 - 99,960,894 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A26,558,826 - 26,578,005 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A26,651,265 - 26,668,192 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A26,651,283 - 26,668,192 (+)Ensemblpanpan1.1panPan2
CIMIP2C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11720,618,642 - 20,633,418 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1720,618,329 - 20,633,403 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1720,512,905 - 20,527,668 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01720,940,005 - 20,954,785 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1720,939,689 - 20,954,785 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11720,626,951 - 20,641,726 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01720,638,105 - 20,652,860 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01720,684,449 - 20,699,207 (+)NCBIUU_Cfam_GSD_1.0
Cimip2c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629264,927,300 - 64,943,438 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364935,896,206 - 5,912,182 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364935,896,206 - 5,912,182 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CIMIP2C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3112,458,916 - 112,474,437 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13112,458,914 - 112,474,431 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23119,458,324 - 119,473,737 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CIMIP2C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11481,059,408 - 81,077,554 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1481,057,764 - 81,076,400 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604531,071,037 - 31,089,094 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cimip2c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247388,702,652 - 8,716,962 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cimip2c
887 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:493
Count of miRNA genes:347
Interacting mature miRNAs:393
Transcripts:ENSMUST00000031078, ENSMUST00000114743, ENSMUST00000127815
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301776Skts3_mskin tumor susceptibility 3 (mouse)Not determined52166729555667403Mouse
1301685Estq2_mestradiol regulated response QTL 2 (mouse)Not determined51563408449634190Mouse
11537367Hmtb11_mhemostasis and thrombosis 11 (mouse)52210082364806579Mouse
4141207Imrfq1_mimmune response to Factor IX QTL 1 (mouse)Not determined5812411742124239Mouse
11537368Hmtb10_mhemostasis and thrombosis 10 (mouse)52210082354500318Mouse
7394748Mom5_mmodifier of Min 5 (mouse)Not determined5884767233475637Mouse
15039371Nmrs21_mNAFLD-associated magnetic resonance shift 21 (mouse)5350482337504823Mouse
1301693Sle6_msystemic lupus erythematosus susceptibility 6 (mouse)Not determined5889069387841837Mouse
1300701Cd8ts1_mCD8 T cell subset 1 (mouse)Not determined52721534861215451Mouse
1357478Kdnw1_mkidney weight 1 (mouse)Not determined5891594940529869Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
14696730Kidlq1_mkidney weight, left QTL 1 (mouse)51356315247563152Mouse
10401122Pgia41_mproteoglycan induced arthritis 41 (mouse)Not determined582314434823280Mouse
1300719Iba5_minduction of brown adipocytes 5 (mouse)Not determined52068699354687134Mouse
1301806Actd2_mactivity-distance traveled 2 (mouse)Not determined5538452039384652Mouse

Markers in Region
D5Jcs301  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38530,471,729 - 30,471,960UniSTSGRCm38
MGSCv37530,774,102 - 30,774,333UniSTSGRCm37
Celera527,949,912 - 27,950,143UniSTS
Cytogenetic Map5B1UniSTS
cM Map5 UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000031078   ⟹   ENSMUSP00000031078
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl530,623,403 - 30,641,432 (+)Ensembl
GRCm38.p6 Ensembl530,466,059 - 30,484,088 (+)Ensembl
Ensembl Acc Id: ENSMUST00000114743   ⟹   ENSMUSP00000110391
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl530,623,428 - 30,641,411 (+)Ensembl
GRCm38.p6 Ensembl530,466,084 - 30,484,067 (+)Ensembl
Ensembl Acc Id: ENSMUST00000127815   ⟹   ENSMUSP00000142635
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl530,623,391 - 30,638,250 (+)Ensembl
GRCm38.p6 Ensembl530,466,047 - 30,480,906 (+)Ensembl
Ensembl Acc Id: ENSMUST00000199129   ⟹   ENSMUSP00000142583
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl530,623,399 - 30,641,388 (+)Ensembl
GRCm38.p6 Ensembl530,466,055 - 30,484,044 (+)Ensembl
RefSeq Acc Id: NM_001417888   ⟹   NP_001404817
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39530,623,395 - 30,641,432 (+)NCBI
RefSeq Acc Id: NM_001417889   ⟹   NP_001404818
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39530,623,395 - 30,641,432 (+)NCBI
RefSeq Acc Id: NM_029285   ⟹   NP_083561
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39530,623,395 - 30,641,432 (+)NCBI
GRCm38530,466,077 - 30,484,087 (+)NCBI
MGSCv37530,768,450 - 30,786,460 (+)RGD
Celera527,944,260 - 27,962,270 (+)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011240783   ⟹   XP_011239085
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39530,624,042 - 30,641,433 (+)NCBI
GRCm38530,466,698 - 30,484,089 (+)NCBI
Sequence:
RefSeq Acc Id: NP_083561   ⟸   NM_029285
- Peptide Label: isoform 1
- UniProtKB: Q9D9M8 (UniProtKB/Swiss-Prot),   Q9DAS2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011239085   ⟸   XM_011240783
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSMUSP00000031078   ⟸   ENSMUST00000031078
Ensembl Acc Id: ENSMUSP00000142635   ⟸   ENSMUST00000127815
Ensembl Acc Id: ENSMUSP00000142583   ⟸   ENSMUST00000199129
Ensembl Acc Id: ENSMUSP00000110391   ⟸   ENSMUST00000114743
RefSeq Acc Id: NP_001404817   ⟸   NM_001417888
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001404818   ⟸   NM_001417889
- Peptide Label: isoform 3
- UniProtKB: D3Z6F6 (UniProtKB/TrEMBL)
Protein Domains
Ciliary microtubule inner protein 2A-C-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9DAS2-F1-model_v2 AlphaFold Q9DAS2 1-200 view protein structure

Promoters
RGD ID:6886286
Promoter ID:EPDNEW_M6594
Type:initiation region
Name:1700001C02Rik_1
Description:Mus musculus RIKEN cDNA 1700001C02 gene , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38530,466,059 - 30,466,119EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1922684 AgrOrtholog
Ensembl Genes ENSMUSG00000029182 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000031078 ENTREZGENE
  ENSMUST00000031078.10 UniProtKB/Swiss-Prot
  ENSMUST00000114743 ENTREZGENE
  ENSMUST00000114743.2 UniProtKB/TrEMBL
  ENSMUST00000127815.2 UniProtKB/Swiss-Prot
  ENSMUST00000199129.5 UniProtKB/TrEMBL
InterPro CIMIP2C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FAM166/UPF0605 UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
KEGG Report mmu:75434 UniProtKB/Swiss-Prot
MGD MGI:1922684 ENTREZGENE
NCBI Gene 75434 ENTREZGENE
PANTHER PROTEIN FAM166C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UPF0573 PROTEIN C2ORF70 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF2475 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cimip2c PhenoGen
UniProt A0A0G2JE07_MOUSE UniProtKB/TrEMBL
  CB070_MOUSE UniProtKB/Swiss-Prot
  D3Z6F6 ENTREZGENE, UniProtKB/TrEMBL
  Q9D9M8 ENTREZGENE
  Q9DAS2 ENTREZGENE
UniProt Secondary Q9D9M8 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-06-05 Cimip2c  ciliary microtubule inner protein 2C  Fam166c  family with sequence similarity 166, member C  Symbol and/or name updated 27372883 PROVISIONAL
2019-11-27 Fam166c  family with sequence similarity 166, member C  1700001C02Rik  RIKEN cDNA 1700001C02 gene  Symbol and/or name change 5135510 APPROVED