Selenof (selenoprotein F) - Rat Genome Database

Name: Selenof
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Selenof (selenoprotein F) Mus musculus

Analyze

Symbol:

Selenof

Name:

selenoprotein F

RGD ID:

1623875

MGI Page

MGI

Description:

Predicted to enable selenium binding activity and thioredoxin peroxidase activity. Predicted to be involved in sperm DNA condensation. Predicted to be located in endoplasmic reticulum. Predicted to be active in endoplasmic reticulum lumen. Orthologous to human SELENOF (selenoprotein F).

Type:

protein-coding

RefSeq Status:

REVIEWED

Previously known as:

15 kDa selenoprotein; 9430015P09Rik; selenoprotein; selenoprotein 15; Sep; Sep15

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SELENOF (selenoprotein F)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Rattus norvegicus (Norway rat):	Selenof (selenoprotein F)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Selenof (selenoprotein F)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SELENOF (selenoprotein F)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SELENOF (selenoprotein F)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Selenof (selenoprotein F)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SELENOF (selenoprotein F)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SELENOF (selenoprotein F)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Selenof (selenoprotein F)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Selenof (selenoprotein F)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	SELENOF (selenoprotein F)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	Y76B12C.3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG7484	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	selenof	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Xenopus tropicalis (tropical clawed frog):	selenof	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	144,276,188 - 144,303,438 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	144,276,065 - 144,303,441 (+)	Ensembl		GRCm39 Ensembl
GRCm38	3	144,570,427 - 144,597,677 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	144,570,304 - 144,597,680 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	144,233,391 - 144,260,641 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	144,507,865 - 144,535,063 (+)	NCBI		MGSCv36	mm8
Celera	3	151,011,453 - 151,038,703 (+)	NCBI		Celera
Cytogenetic Map	3	H2	NCBI
cM Map	3	68.94	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (EXP)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,3,7,8-Tetrachlorodibenzofuran (ISO)

2-hydroxypropanoic acid (ISO)

4,4'-sulfonyldiphenol (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

aflatoxin M1 (ISO)

ammonium chloride (ISO)

arsenic acid (EXP)

arsenite(3-) (EXP,ISO)

benzo[a]pyrene (EXP)

bisphenol A (EXP,ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

cadmium atom (EXP)

cadmium dichloride (EXP,ISO)

CGP 52608 (ISO)

chloropicrin (ISO)

clofibrate (EXP)

cyclosporin A (ISO)

decabromodiphenyl ether (ISO)

dicrotophos (ISO)

disodium selenite (ISO)

elemental selenium (EXP,ISO)

ethanol (EXP)

folic acid (EXP)

gallic acid (ISO)

glafenine (ISO)

inulin (EXP)

ivermectin (ISO)

lead(0) (ISO)

perfluorooctane-1-sulfonic acid (EXP)

potassium dichromate (ISO)

rac-lactic acid (ISO)

Se-methyl-L-selenocysteine (ISO)

Se-methylselenocysteine (ISO)

selenium atom (EXP,ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tetrachloromethane (EXP)

triptonide (EXP)

valproic acid (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

'de novo' post-translational protein folding (TAS)

sperm DNA condensation (ISO)

Cellular Component

endoplasmic reticulum (IEA)

endoplasmic reticulum lumen (IBA,ISO,ISS)

Molecular Function

oxidoreductase activity (IBA)

protein binding (IPI)

selenium binding (ISO)

thioredoxin peroxidase activity (ISO)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal lens fiber morphology (IAGP)

abnormal liver physiology (IAGP)

cataract (IAGP)

lens vacuoles (IAGP)

nuclear cataract (IAGP)

oxidative stress (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	Mouse MP Annotation Import Pipeline	RGD automated import pipeline
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:10349636	PMID:10922068	PMID:10945981	PMID:11042159	PMID:11076861	PMID:11217851	PMID:11278576	PMID:11898406	PMID:12466851	PMID:12477932	PMID:12600282
PMID:12904583	PMID:14610273	PMID:15782199	PMID:16129668	PMID:16141072	PMID:16141073	PMID:18799693	PMID:20388823	PMID:21267068	PMID:21677750	PMID:21768092	PMID:21873635
PMID:23226526	PMID:25886253	PMID:27113764	PMID:27645994	PMID:28378742	PMID:29459677	PMID:29719252	PMID:31958640	PMID:32325033	PMID:32995962	PMID:34638991	PMID:37721623

Genomics

Comparative Map Data

Selenof
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	144,276,188 - 144,303,438 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	144,276,065 - 144,303,441 (+)	Ensembl		GRCm39 Ensembl
GRCm38	3	144,570,427 - 144,597,677 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	144,570,304 - 144,597,680 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	144,233,391 - 144,260,641 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	144,507,865 - 144,535,063 (+)	NCBI		MGSCv36	mm8
Celera	3	151,011,453 - 151,038,703 (+)	NCBI		Celera
Cytogenetic Map	3	H2	NCBI
cM Map	3	68.94	NCBI

SELENOF
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	86,862,445 - 86,914,577 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	86,862,445 - 86,914,424 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	87,328,128 - 87,380,260 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	87,100,716 - 87,152,695 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	87,040,150 - 87,092,128	NCBI
Celera	1	85,571,522 - 85,623,478 (-)	NCBI		Celera
Cytogenetic Map	1	p22.3	NCBI
HuRef	1	85,439,167 - 85,491,281 (-)	NCBI		HuRef
CHM1_1	1	87,442,961 - 87,495,032 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	86,703,158 - 86,755,135 (-)	NCBI		T2T-CHM13v2.0

Selenof
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	236,302,439 - 236,335,216 (+)	NCBI		GRCr8
mRatBN7.2	2	233,642,075 - 233,674,853 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	233,641,932 - 233,674,846 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	241,427,793 - 241,460,472 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	239,321,973 - 239,354,726 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	234,185,401 - 234,218,084 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	250,600,823 - 250,633,903 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	250,600,823 - 250,633,897 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	269,129,474 - 269,162,554 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	242,760,401 - 242,793,046 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	242,747,416 - 242,779,771 (+)	NCBI
Celera	2	225,635,260 - 225,668,028 (+)	NCBI		Celera
Cytogenetic Map	2	q44	NCBI

Selenof
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955423	7,254,214 - 7,285,179 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955423	7,253,980 - 7,285,442 (+)	NCBI	ChiLan1.0	ChiLan1.0

SELENOF
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	140,058,476 - 140,108,100 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	139,213,888 - 139,263,531 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	119,382,707 - 119,432,277 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	88,233,358 - 88,283,193 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	88,234,383 - 88,282,944 (-)	Ensembl	panpan1.1		panPan2

SELENOF
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	61,299,310 - 61,341,035 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	61,299,310 - 61,341,035 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	64,013,065 - 64,054,790 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	61,838,622 - 61,880,416 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	61,838,908 - 61,881,268 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	61,372,462 - 61,414,027 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	61,335,863 - 61,377,517 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	61,834,540 - 61,876,189 (+)	NCBI		UU_Cfam_GSD_1.0

Selenof
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	97,459,228 - 97,491,731 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936732	1,947,624 - 1,977,577 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936732	1,947,357 - 1,978,328 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SELENOF
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	129,258,944 - 129,287,720 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	129,258,943 - 129,287,727 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	141,706,376 - 141,735,552 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SELENOF
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	46,546,719 - 46,596,175 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666033	71,236,552 - 71,286,047 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Selenof
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624742	10,696,513 - 10,728,887 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624742	10,696,281 - 10,729,622 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Selenof
872 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	670
Count of miRNA genes:	390
Interacting mature miRNAs:	428
Transcripts:	ENSMUST00000082437, ENSMUST00000106211, ENSMUST00000144859, ENSMUST00000151086
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1302056	Orgwq4_m	organ weight QTL 4 (mouse)			Not determined		3	30067588	147304689	Mouse
27226732	Tibmd3_m	tibia midshaft diameter 3, 10 week (mouse)					3	96607316	147805636	Mouse
1300752	Ap6q_m	alcohol preference 6 QTL (mouse)			Not determined		3	100372912	147045722	Mouse
27226733	Tibmd6_m	tibia midshaft diameter 6, 16 week (mouse)					3	101307316	149805637	Mouse
1302093	Orgwq5_m	organ weight QTL 5 (mouse)			Not determined		3	107376936	147304689	Mouse
1301381	Bomb1_m	bone marrow pre-B 1 (mouse)			Not determined		3	111133243	145133417	Mouse
1301100	Bdt2_m	bone density traits 2 (mouse)			Not determined		3	114736617	148736784	Mouse
10043919	Afpq8_m	abdominal fat percent QTL 8 (mouse)			Not determined		3	119057332	153057456	Mouse
1558868	Ses9_m	salmonella enteritidis susceptibility 9 (mouse)			Not determined		3	119057332	153057456	Mouse
4141935	Tgq15_m	triglyceride QTL 15 (mouse)			Not determined			119318586	153318586	Mouse
4142449	Tgq14_m	triglyceride QTL 14 (mouse)			Not determined			119318586	153318586	Mouse
1302151	Lprm2_m	lymphoproliferation modifier 2 (mouse)			Not determined		3	119778857	153779044	Mouse
10412240	Alpq6_m	alcohol preference QTL 6 (mouse)			Not determined		3	120772078	154772078	Mouse
4142245	Pstc1_m	periosteal circumference 1 (mouse)			Not determined		3	126270248	159745316	Mouse
1301218	Letohc1_m	low ethanol consumption 1 (mouse)			Not determined		3	126352986	159745316	Mouse
1301347	Fpli_m	fasting plasma insulin (mouse)			Not determined		3	126460514	159745316	Mouse
1301563	Alcp3_m	alcohol preference locus 3 (mouse)			Not determined		3	130736935	159745316	Mouse
11039523	Tbbr1_m	Trypanosoma brucei brucei response 1 (mouse)					3	130849375	159745316	Mouse
1300753	Eae10_m	susceptibility to experimental allergic encephalomyelitis 10 (mouse)			Not determined		3	131736617	148451178	Mouse
10412120	Ccs3_m	colon cancer susceptibility 3 (mouse)			Not determined		3	131754536	146017669	Mouse
1301528	Loco1_m	locomotor activity 1 (mouse)			Not determined		3	133461893	159745316	Mouse
1301221	Hrtfm2_m	heart failure modifier 2 (mouse)			Not determined		3	143270248	147045722	Mouse
1301222	Scc7_m	colon tumor susceptibility 7 (mouse)			Not determined		3	143352986	156364108	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_053102	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC123880	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF288740	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK020419	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK159085	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK159353	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK205282	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK207571	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK213933	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK215876	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK218207	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK218908	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC010481	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC019792	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY262067	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466532	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CJ134973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EF437342	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000082437 ⟹ ENSMUSP00000046910

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	144,276,187 - 144,303,441 (+)	Ensembl
GRCm38.p6 Ensembl	3	144,570,426 - 144,597,680 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000106211 ⟹ ENSMUSP00000101817

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	144,276,454 - 144,303,422 (+)	Ensembl
GRCm38.p6 Ensembl	3	144,570,693 - 144,597,661 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000144859

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	144,276,065 - 144,303,018 (+)	Ensembl
GRCm38.p6 Ensembl	3	144,570,304 - 144,597,257 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000151086 ⟹ ENSMUSP00000142750

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	144,283,413 - 144,301,193 (+)	Ensembl
GRCm38.p6 Ensembl	3	144,577,652 - 144,595,432 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000198279

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	144,296,186 - 144,297,351 (+)	Ensembl
GRCm38.p6 Ensembl	3	144,590,425 - 144,591,590 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000198936

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	144,276,475 - 144,279,173 (+)	Ensembl
GRCm38.p6 Ensembl	3	144,570,714 - 144,573,412 (+)	Ensembl

RefSeq Acc Id:

NM_053102 ⟹ NP_444332

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	3	144,276,188 - 144,303,438 (+)	NCBI
GRCm38	3	144,570,427 - 144,597,677 (+)	ENTREZGENE
MGSCv37	3	144,233,391 - 144,260,641 (+)	RGD
Celera	3	151,011,453 - 151,038,703 (+)	RGD
cM Map	3		ENTREZGENE

Sequence:

show sequence

GCGGGGCTACTGATGGCCGAGCTGGGGCTTCGTGGATAGCCGATTGAATGTCGTGAATAAGAAG
CCCCGGTGTGGGGAGTTTAGGAAAATGCCTAATTTGAATCTCTAAAAGAACCTGAGGACTGTTT
AACAATCGATCACTTACAGGCTCCCATGGTCGCCTAACTAACACTCGTCTTTGTGGGATAATAG
GCTTGTAGCAGTGGCCTTTCGCGGCGGGTTTCGCGTCAGGCAGTGCAGTGGACGTCCCCGGCAC
AGGGGTCCTCAGACCCCTGAAGATTGACGGCAGACCGCAGGGATGGCGGCAGGGCAGGGTGGGT
GGCTGCGGCCCGCTCTGGGGCTGCGCTTGCTGCTGGCGACTGCGTTTCAAGCGGCGTCTGCTCT
GGGGGCAGAGTTTGCGTCAGAGGCATGCAGAGAGTTGGGTTTCTCCAGCAACTTGCTCTGCAGC
TCTTGCGATCTTCTTGGACAGTTTAATCTGCTCCCACTGGATCCTGTTTGCAGAGGGTGCTGTC
AGGAAGAAGCACAATTTGAAACCAAAAAGCTGTATGCAGGAGCCATCCTTGAAGTCTGCGGATG
AAAATTGGGGAGGTTCCCTCAAGTCCAAGCTTTTGTCAGAAGTGATAAACCCAAACTCTTCAGA
GGTCTACAGATCAAGTATGTTCGAGGCTCAGACCCTGTACTAAAGCTTTTGGACGACAACGGGA
ACATTGCTGAAGAACTAAGCATCCTCAAGTGGAACACAGACAGTGTGGAAGAGTTCCTGAGCGA
GAAGTTGGAACGCATATAAACATGCTTAGTAGTTTTTATACTAATCAAATGAATTATCACAGCA
CCTAGACAATAACTTAGTTTTGCATGCTTACATTGGTCATCCTTTTTATGTACATCATTAATCT
TCTGACAAGAAGCTGAAGTAGCACCACAGTCCATAATATATCAGGATCTGGCAAGCTTAAGGAA
CCCAGCTCTTAGAAATTTCTCTTCTTCTACACTTGTTGCTCTCACCAGTGAAACGCTTTGTAAG
GAGGCATCTGGGTAATTATGCAAATAAGTTTGTGATAATTGCTCCAGTTCTACAAACAACAGAA
TTTTAAATAGAGGAAGTGGATAAAGGAGACACCTCCCTTGCTGTGTGCTCTTTGAAAGTAATTG
ACAGAAAACTACAAACACGTAGGATGCCCTGCGCCTCAGCAGCACCCACCCCAGAGCCTCTTGG
CATGCCCAGCTTTCTTTTCAGTACAAGTATTTGTAGTTTGTAATGAATGTGCCACATACAGGTT
TTGTAGCTTATTATTATGGAACAGACTGAAGATCTGCAGTACGAATTTAATACTTATAAAGGTT
TGCATTAATGAGGATTACACAGAAAACCTTTGTTAAGGACTTGTGTAGATCTGATAATTGGCAA
ATTTTTATTTTAAAAGTATTCTTACAGAAGAGTTCCATTTAAGAATGTTCACTTATAGGACCAA
AATATAAATAAAAACTTTCAAATATGTTTGATTTTAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_444332	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAG31765	(Get FASTA)	NCBI Sequence Viewer
	AAH19792	(Get FASTA)	NCBI Sequence Viewer
	BAC55255	(Get FASTA)	NCBI Sequence Viewer
	BAE34803	(Get FASTA)	NCBI Sequence Viewer
	BAE35012	(Get FASTA)	NCBI Sequence Viewer
	EDL12029	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000046910
	ENSMUSP00000046910.7
	ENSMUSP00000101817.3
	ENSMUSP00000142750.2
GenBank Protein	Q9ERR7	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_444332 ⟸ NM_053102
- Peptide Label:	precursor
- UniProtKB:	Q8VE40 (UniProtKB/Swiss-Prot), Q544W8 (UniProtKB/Swiss-Prot), Q3TXW1 (UniProtKB/Swiss-Prot), Q9ERR7 (UniProtKB/Swiss-Prot), A0A0R4J0K1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAGQGGWLRPALGLRLLLATAFQAASALGAEFASEACRELGFSSNLLCSSCDLLGQFNLLPLD PVCRGCCQEEAQFETKKLYAGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVL KLLDDNGNIAEELSILKWNTDSVEEFLSEKLERI hide sequence

RefSeq Acc Id:

ENSMUSP00000101817 ⟸ ENSMUST00000106211

RefSeq Acc Id:

ENSMUSP00000142750 ⟸ ENSMUST00000151086

RefSeq Acc Id:

ENSMUSP00000046910 ⟸ ENSMUST00000082437

Protein Domains

Selenoprotein F/M

Promoters

RGD ID:

6833967

Promoter ID:

MM_KWN:36313

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

ENSMUST00000106211, NM_011828, OTTMUST00000050336, OTTMUST00000050338, UC008RPP.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	3	144,232,421 - 144,233,787 (-)	MPROMDB

RGD ID:

6834435

Promoter ID:

MM_KWN:36314

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

MEF_B6

Transcripts:

OTTMUST00000050339

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	3	144,240,536 - 144,241,036 (+)	MPROMDB

RGD ID:

6882652

Promoter ID:

EPDNEW_M4724

Type:

initiation region

Name:

Selenof_2

Description:

Mus musculus selenoprotein F , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M4725

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	3	144,570,378 - 144,570,438	EPDNEW

RGD ID:

6882548

Promoter ID:

EPDNEW_M4725

Type:

initiation region

Name:

Selenof_1

Description:

Mus musculus selenoprotein F , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M4724

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	3	144,570,714 - 144,570,774	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1927947	AgrOrtholog
Ensembl Genes	ENSMUSG00000037072	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000082437	ENTREZGENE
	ENSMUST00000082437.11	UniProtKB/TrEMBL
	ENSMUST00000106211.3	UniProtKB/TrEMBL
	ENSMUST00000151086.3	UniProtKB/TrEMBL
Gene3D-CATH	3.40.30.50	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	Sep15/SelM_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Sep15_SelM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Sep15_SelM_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Thioredoxin-like_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:93684	UniProtKB/Swiss-Prot
MGD	MGI:1927947	ENTREZGENE
NCBI Gene	93684	ENTREZGENE
PANTHER	PTHR13077	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SELENOPROTEIN F	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Sep15_SelM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Selenof	PhenoGen
Superfamily-SCOP	SSF52833	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2JEF3_MOUSE	UniProtKB/TrEMBL
	A0A0R4J0K1	ENTREZGENE, UniProtKB/TrEMBL
	A0A1C7ZMY4_MOUSE	UniProtKB/TrEMBL
	Q3TXW1	ENTREZGENE
	Q544W8	ENTREZGENE
	Q8VE40	ENTREZGENE
	Q9ERR7	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	Q3TXW1	UniProtKB/Swiss-Prot
	Q544W8	UniProtKB/Swiss-Prot
	Q8VE40	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-10-25	Selenof	selenoprotein F	Sep15	selenoprotein 15	Symbol and/or name change	5135510	APPROVED
2015-12-29	Sep15	selenoprotein 15		selenoprotein	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar

Mammalian Phenotype