Slc22a13b (solute carrier family 22 (organic cation transporter), member 13b) - Rat Genome Database
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Gene: Slc22a13b (solute carrier family 22 (organic cation transporter), member 13b) Mus musculus
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Symbol: Slc22a13b
Name: solute carrier family 22 (organic cation transporter), member 13b
RGD ID: 1623855
MGI Page MGI
Description: This locus is a duplication of the neighboring solute carrier family 22, member 13 gene. The locus contains a polymorphic nonsense mutation (dbSNP rs29642637). Consequently, the locus appears to be protein-coding in some strains and non-coding in other strains including C57BL/6. [provided by RefSeq, Feb 2010]
Type: pseudo
RefSeq Status: VALIDATED
Also known as: 9330176C04Rik; Slc22a13b-ps; solute carrier family 22 (organic cation transporter), member 13b, pseudogene
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Related Functional Gene: Slc22a13  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399119,049,557 - 119,060,758 (-)NCBIGRCm39mm39
GRCm389119,220,491 - 119,231,692 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9119,220,488 - 119,231,692 (-)EnsemblGRCm38mm10GRCm38
MGSCv379119,129,609 - 119,140,810 (-)NCBIGRCm37mm9NCBIm37
MGSCv369119,069,189 - 119,080,273 (-)NCBImm8
Celera9119,687,884 - 119,699,085 (-)NCBICelera
Cytogenetic Map9F3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:17714910  


Genomics

Comparative Map Data
Slc22a13b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399119,049,557 - 119,060,758 (-)NCBIGRCm39mm39
GRCm389119,220,491 - 119,231,692 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9119,220,488 - 119,231,692 (-)EnsemblGRCm38mm10GRCm38
MGSCv379119,129,609 - 119,140,810 (-)NCBIGRCm37mm9NCBIm37
MGSCv369119,069,189 - 119,080,273 (-)NCBImm8
Celera9119,687,884 - 119,699,085 (-)NCBICelera
Cytogenetic Map9F3NCBI
TMEM31
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX103,710,909 - 103,714,032 (+)EnsemblGRCh38hg38GRCh38
GRCh38X103,710,909 - 103,714,032 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X102,965,837 - 102,968,960 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X102,852,493 - 102,855,616 (+)NCBINCBI36hg18NCBI36
Build 34X102,771,981 - 102,775,105NCBI
CeleraX103,404,837 - 103,407,960 (+)NCBI
Cytogenetic MapXq22.2NCBI
HuRefX92,622,793 - 92,625,915 (+)NCBIHuRef
CHM1_1X102,858,852 - 102,861,974 (+)NCBICHM1_1


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986230401120230530Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986239845120289624Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986748483120748483Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9101060861124595110Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9102000187124595110Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9102000187124595110Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103289445124595110Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103289445124595110Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103289445124595110Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:409
Count of miRNA genes:147
Interacting mature miRNAs:168
Transcripts:ENSMUST00000172684, ENSMUST00000173185, ENSMUST00000174789
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000173185   ⟹   ENSMUSP00000134667
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9119,220,488 - 119,231,692 (-)Ensembl
RefSeq Acc Id: NR_033303
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399119,049,557 - 119,060,758 (-)NCBI
GRCm389119,220,491 - 119,231,692 (-)ENTREZGENE
MGSCv379119,129,609 - 119,140,810 (-)RGD
Celera9119,687,884 - 119,699,085 (-)RGD
cM Map9 ENTREZGENE
Sequence:
Protein Sequences
GenBank Protein AAI47283 (Get FASTA)   NCBI Sequence Viewer  
  AAI47284 (Get FASTA)   NCBI Sequence Viewer  
  BAC37535 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: ENSMUSP00000134667   ⟸   ENSMUST00000173185

Promoters
RGD ID:8671184
Promoter ID:EPDNEW_M13623
Type:multiple initiation site
Name:Slc22a13b-ps_1
Description:Mus musculus solute carrier family 22 , member 13b, pseudogene(Slc22a13b-ps), non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389119,231,721 - 119,231,781EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000092212 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000173185 ENTREZGENE
MGD MGI:1924762 ENTREZGENE
NCBI Gene 109280 ENTREZGENE
PhenoGen Slc22a13b PhenoGen
UniGene Mm.261557 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-03-19 Slc22a13b  solute carrier family 22 (organic cation transporter), member 13b  Slc22a13b-ps  solute carrier family 22 (organic cation transporter), member 13b, pseudogene  Symbol and/or name change 5135510 APPROVED
2012-09-19 Slc22a13b-ps  solute carrier family 22 (organic cation transporter), member 13b, pseudogene  Slc22a13b  solute carrier family 22 (organic cation transporter), member 13b  Symbol and/or name change 5135510 APPROVED
2011-08-17 Slc22a13b  solute carrier family 22 (organic cation transporter), member 13b  Slc22a13b  solute carrier family 22 (organic cation transporter), member 13b  Symbol and/or name change 5135510 APPROVED
2011-08-02 Slc22a13b  solute carrier family 22 (organic cation transporter), member 13b  Slc22a13b  solute carrier family 22 (orgamoc cation transporter), member 13b  Symbol and/or name change 5135510 APPROVED
2011-07-27 Slc22a13b  solute carrier family 22 (orgamoc cation transporter), member 13b  9330176C04Rik  RIKEN cDNA 9330176C04 gene  Symbol and/or name change 5135510 APPROVED