Zc3h3 (zinc finger CCCH type containing 3) - Rat Genome Database

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Gene: Zc3h3 (zinc finger CCCH type containing 3) Mus musculus
Analyze
Symbol: Zc3h3
Name: zinc finger CCCH type containing 3
RGD ID: 1623806
MGI Page MGI
Description: Enables R-SMAD binding activity. Acts upstream of or within mRNA 3'-end processing and positive regulation of activin receptor signaling pathway. Part of mRNA cleavage and polyadenylation specificity factor complex. Is expressed in central nervous system and genitourinary system. Orthologous to human ZC3H3 (zinc finger CCCH-type containing 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: BC049953; Kiaa0150; Sm; smad-interacting CPSF-like factor; Smicl; Zc3hdc3; zinc finger CCCH domain-containing protein 3; zinc finger CCCH type domain containing 3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm7353  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391575,626,279 - 75,713,772 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1575,626,279 - 75,713,764 (-)EnsemblGRCm39 Ensembl
GRCm381575,754,430 - 75,842,061 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1575,754,430 - 75,841,915 (-)EnsemblGRCm38mm10GRCm38
MGSCv371575,584,877 - 75,672,338 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361575,581,702 - 75,669,163 (-)NCBIMGSCv36mm8
MGSCv361576,251,464 - 76,338,765 (-)NCBIMGSCv36mm8
Celera1577,255,238 - 77,342,629 (-)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1534.84NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15489334   PMID:15618518   PMID:15782199   PMID:16115198  
PMID:16141072   PMID:16141073   PMID:17967808   PMID:18287559   PMID:18799693   PMID:21873635  


Genomics

Comparative Map Data
Zc3h3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391575,626,279 - 75,713,772 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1575,626,279 - 75,713,764 (-)EnsemblGRCm39 Ensembl
GRCm381575,754,430 - 75,842,061 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1575,754,430 - 75,841,915 (-)EnsemblGRCm38mm10GRCm38
MGSCv371575,584,877 - 75,672,338 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361575,581,702 - 75,669,163 (-)NCBIMGSCv36mm8
MGSCv361576,251,464 - 76,338,765 (-)NCBIMGSCv36mm8
Celera1577,255,238 - 77,342,629 (-)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1534.84NCBI
ZC3H3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388143,437,659 - 143,541,447 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8143,437,659 - 143,541,447 (-)EnsemblGRCh38hg38GRCh38
GRCh378144,519,829 - 144,623,617 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368144,590,968 - 144,694,763 (-)NCBINCBI36Build 36hg18NCBI36
Build 348144,590,974 - 144,694,746NCBI
Celera8140,831,713 - 140,933,556 (-)NCBICelera
Cytogenetic Map8q24.3NCBI
HuRef8139,772,578 - 139,874,905 (-)NCBIHuRef
CHM1_18144,560,281 - 144,663,535 (-)NCBICHM1_1
T2T-CHM13v2.08144,587,223 - 144,699,075 (-)NCBIT2T-CHM13v2.0
Zc3h3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87109,321,423 - 109,406,241 (-)NCBIGRCr8
mRatBN7.27107,440,694 - 107,525,451 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7107,440,694 - 107,525,451 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7109,179,939 - 109,264,663 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07111,403,612 - 111,488,339 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07111,349,520 - 111,434,264 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07116,787,762 - 116,872,536 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7116,787,766 - 116,872,511 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07116,679,040 - 116,765,271 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47113,714,123 - 113,813,124 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17113,743,162 - 113,847,328 (-)NCBI
Celera7103,802,384 - 103,885,283 (-)NCBICelera
Cytogenetic Map7q34NCBI
Zc3h3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554542,142,062 - 2,239,518 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554542,145,605 - 2,239,643 (-)NCBIChiLan1.0ChiLan1.0
ZC3H3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27160,918,461 - 161,036,705 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18136,435,580 - 136,541,985 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08140,188,041 - 140,294,113 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18143,203,325 - 143,309,829 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8143,203,325 - 143,310,210 (-)Ensemblpanpan1.1panPan2
ZC3H3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11337,128,915 - 37,214,643 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1337,130,999 - 37,214,997 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1337,086,105 - 37,173,402 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01337,601,143 - 37,688,716 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1337,601,129 - 37,688,672 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11337,275,547 - 37,363,068 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01337,392,711 - 37,480,013 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01337,873,663 - 37,961,174 (-)NCBIUU_Cfam_GSD_1.0
Zc3h3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053031,165,453 - 1,249,414 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364708,591,540 - 8,675,519 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364708,591,564 - 8,675,505 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZC3H3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl41,010,638 - 1,089,738 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.141,009,927 - 1,084,133 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.241,182,154 - 1,233,200 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZC3H3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18137,656,299 - 137,762,448 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8137,656,302 - 137,762,403 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660392,131,282 - 2,247,050 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zc3h3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473513,230,642 - 13,319,666 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473513,230,576 - 13,320,068 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zc3h3
3041 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:325
Count of miRNA genes:240
Interacting mature miRNAs:262
Transcripts:ENSMUST00000100538
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141952W3q7_mweight 3 weeks QTL 7 (mouse)Not determined348969478601286Mouse
4142252Tailaq4_mtail length adjusted QTL 4 (mouse)Not determined348969478601286Mouse
4142448Tailq6_mtail length QTL 6 (mouse)Not determined348969478601286Mouse
1357559Scfq2_msubcutaneous fat pad weight QTL 2 (mouse)Not determined15348969478601286Mouse
1357659Epfpq4_mepididymal fat percentage QTL 4 (mouse)Not determined15348969478601286Mouse
27226786Feml11_mfemur length 11, 5 week (mouse)15612948175871849Mouse
27095932Ulnl11_mulna length 11, 16 week (mouse)15612948176384200Mouse
27226717Tibw4_mtibia width 4, proximal, 10 week (mouse)15612948178684200Mouse
27226734Tibmd5_mtibia midshaft diameter 5, 10 week (mouse)15612948186684201Mouse
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
27226721Tibw8_mtibia width 8, proximal, 16 week (mouse)15692948175871849Mouse
27226773Tibl16_mtibia length 16, 10 week (mouse)15692948175871849Mouse
27226777Tibl8_mtibia length 8, 5 week (mouse)15692948184584201Mouse
1301433Rapop5_mradiation-induced apoptosis 5 (mouse)Not determined15927302279474762Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146102008435Mouse
26884392Humsd8_mhumerus midshaft diameter 8, 16 week (mouse)152930014676084200Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578416103425899Mouse
27226729Tibmd2_mtibia midshaft diameter 2, 5 week (mouse)153800024486684201Mouse
26884402Cvht9_mcranial vault height 9, 16 week (mouse)154216339695497881Mouse
1357703Vtbt17_mvertebral trabecular bone trait 17 (mouse)Not determined154455331378553437Mouse
1301568Tria2_mT-cell receptor induced activation 2 (mouse)Not determined154485914178859281Mouse
1357756Alaa4_malopecia areata 4 (mouse)Not determined154638964680389845Mouse
10755515Amzn3_manatomical modifier of Zfp423 3 (mouse)154638964680389845Mouse
1301006Hfib1_mhepatic fibrogenesis 1 (mouse)Not determined154730633481306479Mouse
1301860Gct3_mgranulosa cell tumorigenesis 3 (mouse)Not determined154740959681409691Mouse
26884397Humsd5_mhumerus midshaft diameter 5, 10 week (mouse)154836339698397881Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548363396101708435Mouse
1301429Pcir3_mperiosteal circumference 3 (mouse)Not determined154846536282465496Mouse
1301779Dpml_mdopamine loss (mouse)Not determined155100469476794493Mouse
4142198Hbtq_mhabituation QTL (mouse)Not determined155116070885160833Mouse
10045637Heal27_mwound healing/regeneration 29 (mouse)Not determined155141836185418511Mouse
10412067Pain2_mpain 2 (mouse)Not determined155164533985645626Mouse
1302080Szs13_mseizure susceptibility 13 (mouse)Not determined155168583285694449Mouse
1301708Cocrb14_mcocaine related behavior 14 (mouse)Not determined155180651585806651Mouse
38501067Tip3_mtuberculosis immunophenotype 3, IFN-g level (mouse)155356339689584203Mouse
13504731Cath5_mcarotid atherosclerosis 5 (mouse)155478912988789129Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556186708103425899Mouse
27095936Ulnl4_mulna length 4, 5 week (mouse)155676339687684201Mouse
1300800Ses3_msalmonella enteritidis susceptibility 3 (mouse)Not determined155711700591117153Mouse
1357407Pfat4_mpredicted fat percentage 4 (mouse)8.6Body fat amountpredicted fat percentage155711700591117153Mouse
12880420V25Dq8_mvitamin D inactive form serum level QTL 8 (mouse)156158420095584200Mouse
1301601Faq9_mfluctuating asymmetry QTL 9 (mouse)Not determined156316390397163995Mouse
1558786Msq1_mMAV-1 susceptibility QTL 1 (mouse)Not determined156338964681086436Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564306334103425899Mouse
4141135Cia35_mcollagen induced arthritis 35 (mouse)Not determined156481182698811946Mouse
1301119Drb7_mdopamine receptor binding 7 (mouse)Not determined156533657899341028Mouse
1301171Brm2_mbrachyury modifier 2 (mouse)Not determined156552537699525499Mouse
4141921Pstc3_mperiosteal circumference 3 (mouse)Not determined1567270698101270847Mouse
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570345653104073951Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570349271104073951Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570349271104073951Mouse
25671381Hrsq3_mhost response to SARS QTL 3, eosinophilia (mouse)157214453975844833Mouse
1300844Emo2_memotionality 2 (mouse)Not determined157237245976794493Mouse
1302002Cocia2_mcocaine induced activation 2 (mouse)Not determined157237245979899178Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572382669104073951Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573430144104073951Mouse
15092079Igly6_mIgG glycosylation 6, GP6 (mouse)157410054082674156Mouse
13442492Mecth2_mmechanosensation threshold 2 (mouse)157466284979387201Mouse
1301472Pain1_mpain 1 (mouse)Not determined157532084690813185Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001416439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001416440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001416441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001416442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001416443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001416444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_172121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_183921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_183922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_183923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC116393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC116520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ516034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK086799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK138281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC038813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC049953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC111448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000100538   ⟹   ENSMUSP00000098106
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1575,626,279 - 75,713,764 (-)Ensembl
GRCm38.p6 Ensembl1575,754,430 - 75,841,915 (-)Ensembl
RefSeq Acc Id: ENSMUST00000229000
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1575,651,173 - 75,684,708 (-)Ensembl
GRCm38.p6 Ensembl1575,779,324 - 75,812,859 (-)Ensembl
RefSeq Acc Id: ENSMUST00000229970
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1575,648,832 - 75,700,058 (-)Ensembl
GRCm38.p6 Ensembl1575,776,983 - 75,828,209 (-)Ensembl
RefSeq Acc Id: NM_001416439   ⟹   NP_001403368
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391575,626,279 - 75,713,772 (-)NCBI
RefSeq Acc Id: NM_001416440   ⟹   NP_001403369
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391575,626,279 - 75,713,772 (-)NCBI
RefSeq Acc Id: NM_001416441   ⟹   NP_001403370
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391575,626,279 - 75,713,772 (-)NCBI
RefSeq Acc Id: NM_001416442   ⟹   NP_001403371
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391575,626,279 - 75,713,772 (-)NCBI
RefSeq Acc Id: NM_001416443   ⟹   NP_001403372
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391575,626,279 - 75,684,768 (-)NCBI
RefSeq Acc Id: NM_001416444   ⟹   NP_001403373
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391575,626,279 - 75,684,768 (-)NCBI
RefSeq Acc Id: NM_172121   ⟹   NP_742119
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391575,626,279 - 75,713,772 (-)NCBI
GRCm381575,754,447 - 75,841,908 (-)NCBI
MGSCv371575,584,877 - 75,672,338 (-)RGD
Celera1577,255,238 - 77,342,629 (-)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_183921
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391575,626,279 - 75,713,772 (-)NCBI
RefSeq Acc Id: NR_183922
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391575,626,279 - 75,713,772 (-)NCBI
RefSeq Acc Id: NR_183923
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391575,626,279 - 75,713,772 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_742119   ⟸   NM_172121
- Peptide Label: isoform 1
- UniProtKB: Q80X78 (UniProtKB/Swiss-Prot),   Q8CHP0 (UniProtKB/Swiss-Prot),   Q3UUL4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000098106   ⟸   ENSMUST00000100538
RefSeq Acc Id: NP_001403371   ⟸   NM_001416442
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001403370   ⟸   NM_001416441
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001403369   ⟸   NM_001416440
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001403368   ⟸   NM_001416439
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001403373   ⟸   NM_001416444
- Peptide Label: isoform 7
RefSeq Acc Id: NP_001403372   ⟸   NM_001416443
- Peptide Label: isoform 6
Protein Domains
C3H1-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8CHP0-F1-model_v2 AlphaFold Q8CHP0 1-950 view protein structure

Promoters
RGD ID:6826147
Promoter ID:MM_KWN:18809
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Lung
Transcripts:UC007WHG.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361575,658,541 - 75,659,041 (-)MPROMDB
RGD ID:6826614
Promoter ID:MM_KWN:18810
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000100538
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361575,672,204 - 75,672,704 (-)MPROMDB
RGD ID:8684022
Promoter ID:EPDNEW_M20042
Type:multiple initiation site
Name:Zc3h3_1
Description:Mus musculus zinc finger CCCH type containing 3 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381575,841,921 - 75,841,981EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2663721 AgrOrtholog
Ensembl Genes ENSMUSG00000075600 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000100538 ENTREZGENE
  ENSMUST00000100538.4 UniProtKB/Swiss-Prot
Gene3D-CATH Zinc finger, CCCH-type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Znf_CCCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_CCCH_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:223642 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2663721 ENTREZGENE
NCBI Gene 223642 ENTREZGENE
PANTHER CCCH ZINGC FINGER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam zf-CCCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Zc3h3 PhenoGen
PROSITE ZF_C3H1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ZnF_C3H1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF90229 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt Q14DV8_MOUSE UniProtKB/TrEMBL
  Q3UUL4 ENTREZGENE, UniProtKB/TrEMBL
  Q80X78 ENTREZGENE
  Q8CHP0 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q80X78 UniProtKB/Swiss-Prot