Apol9a (apolipoprotein L 9a) - Rat Genome Database

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Gene: Apol9a (apolipoprotein L 9a) Mus musculus
Analyze
Symbol: Apol9a
Name: apolipoprotein L 9a
RGD ID: 1623802
MGI Page MGI
Description: Predicted to enable chloride channel activity and lipid binding activity. Predicted to be located in extracellular space. Predicted to be part of high-density lipoprotein particle and very-low-density lipoprotein particle. Human ortholog(s) of this gene implicated in schizophrenia. Orthologous to human APOL1 (apolipoprotein L1) and APOL2 (apolipoprotein L2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: MGC68363
RGD Orthologs
Human
Rat
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391577,287,989 - 77,295,280 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1577,287,989 - 77,295,335 (-)EnsemblGRCm39 Ensembl
GRCm381577,403,789 - 77,411,080 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1577,403,789 - 77,411,135 (-)EnsemblGRCm38mm10GRCm38
MGSCv371577,234,219 - 77,241,510 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361577,231,044 - 77,238,382 (-)NCBIMGSCv36mm8
Celera1578,892,749 - 78,894,701 (-)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1536.4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1-naphthyl isothiocyanate  (ISO)
17beta-estradiol  (ISO)
17beta-estradiol 3-benzoate  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
aldehydo-D-glucose  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
benzo[a]pyrene  (EXP)
benzo[b]fluoranthene  (EXP)
bisphenol A  (EXP,ISO)
bortezomib  (ISO)
butanal  (ISO)
C60 fullerene  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chlormequat chloride  (ISO)
chloroprene  (ISO)
chrysene  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
D-glucose  (EXP)
dexamethasone  (EXP,ISO)
dichloroacetic acid  (EXP)
diethyl maleate  (ISO)
dimethylarsinic acid  (EXP)
dioxygen  (ISO)
epoxiconazole  (EXP)
flutamide  (ISO)
fructose  (EXP)
furan  (ISO)
gentamycin  (ISO)
glucose  (EXP)
glycidol  (ISO)
glyphosate  (EXP)
GW 4064  (EXP)
indometacin  (ISO)
lead(0)  (ISO)
methylarsonic acid  (EXP)
N-nitrosodiethylamine  (ISO)
N-nitrosodimethylamine  (ISO)
nickel atom  (ISO)
paracetamol  (ISO)
pentachlorophenol  (EXP)
pentanal  (ISO)
perfluorohexanesulfonic acid  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
phenobarbital  (EXP)
pirinixic acid  (EXP)
potassium dichromate  (EXP)
pregnenolone 16alpha-carbonitrile  (EXP)
propanal  (ISO)
rotenone  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (EXP)
succimer  (EXP)
tamoxifen  (EXP)
testosterone  (ISO)
tetraphene  (EXP)
thioacetamide  (ISO)
titanium dioxide  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:16141072   PMID:21267068   PMID:21873635   PMID:27697524   PMID:34380029   PMID:35859175  


Genomics

Comparative Map Data
Apol9a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391577,287,989 - 77,295,280 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1577,287,989 - 77,295,335 (-)EnsemblGRCm39 Ensembl
GRCm381577,403,789 - 77,411,080 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1577,403,789 - 77,411,135 (-)EnsemblGRCm38mm10GRCm38
MGSCv371577,234,219 - 77,241,510 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361577,231,044 - 77,238,382 (-)NCBIMGSCv36mm8
Celera1578,892,749 - 78,894,701 (-)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1536.4NCBI
APOL4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382236,189,128 - 36,204,833 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2236,189,124 - 36,204,840 (-)EnsemblGRCh38hg38GRCh38
GRCh372236,585,176 - 36,600,879 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362234,915,122 - 34,930,825 (-)NCBINCBI36Build 36hg18NCBI36
Build 342234,909,675 - 34,925,379NCBI
Celera2220,387,749 - 20,403,452 (-)NCBICelera
Cytogenetic Map22q12.3NCBI
HuRef2219,553,303 - 19,569,009 (-)NCBIHuRef
CHM1_12236,544,308 - 36,559,997 (-)NCBICHM1_1
T2T-CHM13v2.02236,649,310 - 36,664,999 (-)NCBIT2T-CHM13v2.0
Apol9a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87111,021,452 - 111,030,380 (-)NCBIGRCr8
mRatBN7.27109,140,871 - 109,149,799 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7109,140,871 - 109,147,649 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7110,896,421 - 110,903,180 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07113,120,004 - 113,126,763 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07113,081,441 - 113,088,205 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07118,927,013 - 118,933,778 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7118,927,008 - 118,933,812 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07118,924,869 - 118,931,634 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47115,472,725 - 115,479,486 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7105,488,312 - 105,495,073 (-)NCBICelera
Cytogenetic Map7q34NCBI
APOL4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11918,907,967 - 18,917,968 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666045106,981,189 - 106,991,930 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Apol9a
197 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:244
Count of miRNA genes:199
Interacting mature miRNAs:204
Transcripts:ENSMUST00000109775
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141952W3q7_mweight 3 weeks QTL 7 (mouse)Not determined348969478601286Mouse
4142252Tailaq4_mtail length adjusted QTL 4 (mouse)Not determined348969478601286Mouse
4142448Tailq6_mtail length QTL 6 (mouse)Not determined348969478601286Mouse
1357559Scfq2_msubcutaneous fat pad weight QTL 2 (mouse)Not determined15348969478601286Mouse
1357659Epfpq4_mepididymal fat percentage QTL 4 (mouse)Not determined15348969478601286Mouse
27226717Tibw4_mtibia width 4, proximal, 10 week (mouse)15612948178684200Mouse
27226734Tibmd5_mtibia midshaft diameter 5, 10 week (mouse)15612948186684201Mouse
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
27226777Tibl8_mtibia length 8, 5 week (mouse)15692948184584201Mouse
1301433Rapop5_mradiation-induced apoptosis 5 (mouse)Not determined15927302279474762Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146102008435Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578416103425899Mouse
27226729Tibmd2_mtibia midshaft diameter 2, 5 week (mouse)153800024486684201Mouse
26884402Cvht9_mcranial vault height 9, 16 week (mouse)154216339695497881Mouse
1357703Vtbt17_mvertebral trabecular bone trait 17 (mouse)Not determined154455331378553437Mouse
1301568Tria2_mT-cell receptor induced activation 2 (mouse)Not determined154485914178859281Mouse
1357756Alaa4_malopecia areata 4 (mouse)Not determined154638964680389845Mouse
10755515Amzn3_manatomical modifier of Zfp423 3 (mouse)154638964680389845Mouse
1301006Hfib1_mhepatic fibrogenesis 1 (mouse)Not determined154730633481306479Mouse
1301860Gct3_mgranulosa cell tumorigenesis 3 (mouse)Not determined154740959681409691Mouse
26884397Humsd5_mhumerus midshaft diameter 5, 10 week (mouse)154836339698397881Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548363396101708435Mouse
1301429Pcir3_mperiosteal circumference 3 (mouse)Not determined154846536282465496Mouse
4142198Hbtq_mhabituation QTL (mouse)Not determined155116070885160833Mouse
10045637Heal27_mwound healing/regeneration 29 (mouse)Not determined155141836185418511Mouse
10412067Pain2_mpain 2 (mouse)Not determined155164533985645626Mouse
1302080Szs13_mseizure susceptibility 13 (mouse)Not determined155168583285694449Mouse
1301708Cocrb14_mcocaine related behavior 14 (mouse)Not determined155180651585806651Mouse
38501067Tip3_mtuberculosis immunophenotype 3, IFN-g level (mouse)155356339689584203Mouse
13504731Cath5_mcarotid atherosclerosis 5 (mouse)155478912988789129Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556186708103425899Mouse
27095936Ulnl4_mulna length 4, 5 week (mouse)155676339687684201Mouse
1300800Ses3_msalmonella enteritidis susceptibility 3 (mouse)Not determined155711700591117153Mouse
1357407Pfat4_mpredicted fat percentage 4 (mouse)8.6Body fat amountpredicted fat percentage155711700591117153Mouse
12880420V25Dq8_mvitamin D inactive form serum level QTL 8 (mouse)156158420095584200Mouse
1301601Faq9_mfluctuating asymmetry QTL 9 (mouse)Not determined156316390397163995Mouse
1558786Msq1_mMAV-1 susceptibility QTL 1 (mouse)Not determined156338964681086436Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564306334103425899Mouse
4141135Cia35_mcollagen induced arthritis 35 (mouse)Not determined156481182698811946Mouse
1301119Drb7_mdopamine receptor binding 7 (mouse)Not determined156533657899341028Mouse
1301171Brm2_mbrachyury modifier 2 (mouse)Not determined156552537699525499Mouse
4141921Pstc3_mperiosteal circumference 3 (mouse)Not determined1567270698101270847Mouse
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570345653104073951Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570349271104073951Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570349271104073951Mouse
1302002Cocia2_mcocaine induced activation 2 (mouse)Not determined157237245979899178Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572382669104073951Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573430144104073951Mouse
15092079Igly6_mIgG glycosylation 6, GP6 (mouse)157410054082674156Mouse
13442492Mecth2_mmechanosensation threshold 2 (mouse)157466284979387201Mouse
1301472Pain1_mpain 1 (mouse)Not determined157532084690813185Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000081776   ⟹   ENSMUSP00000080468
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1577,287,989 - 77,295,335 (-)Ensembl
GRCm38.p6 Ensembl1577,403,789 - 77,411,135 (-)Ensembl
RefSeq Acc Id: ENSMUST00000089452   ⟹   ENSMUSP00000086875
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1577,287,989 - 77,295,234 (-)Ensembl
GRCm38.p6 Ensembl1577,403,789 - 77,411,034 (-)Ensembl
RefSeq Acc Id: ENSMUST00000229175
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1577,290,982 - 77,295,227 (-)Ensembl
GRCm38.p6 Ensembl1577,406,782 - 77,411,027 (-)Ensembl
RefSeq Acc Id: ENSMUST00000231161   ⟹   ENSMUSP00000155376
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1577,289,147 - 77,290,765 (-)Ensembl
GRCm38.p6 Ensembl1577,404,947 - 77,406,565 (-)Ensembl
RefSeq Acc Id: NM_001162883   ⟹   NP_001156355
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391577,287,989 - 77,295,280 (-)NCBI
GRCm381577,403,789 - 77,411,080 (-)ENTREZGENE
MGSCv371577,234,219 - 77,241,510 (-)RGD
Celera1578,892,749 - 78,894,701 (-)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001416010   ⟹   NP_001402939
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391577,287,989 - 77,295,280 (-)NCBI
RefSeq Acc Id: NM_001416011   ⟹   NP_001402940
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391577,287,989 - 77,295,280 (-)NCBI
RefSeq Acc Id: NM_001416012   ⟹   NP_001402941
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391577,287,989 - 77,295,214 (-)NCBI
RefSeq Acc Id: NM_001416013   ⟹   NP_001402942
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391577,287,989 - 77,295,214 (-)NCBI
RefSeq Acc Id: NM_173786   ⟹   NP_776147
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391577,287,989 - 77,295,214 (-)NCBI
GRCm381577,403,789 - 77,411,034 (-)NCBI
MGSCv371577,234,219 - 77,241,510 (-)RGD
Celera1578,892,749 - 78,894,701 (-)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_001156355   ⟸   NM_001162883
- UniProtKB: Q8VDU3 (UniProtKB/TrEMBL),   Q6PF90 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_776147   ⟸   NM_173786
- UniProtKB: Q8VDU3 (UniProtKB/TrEMBL),   Q6PF90 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000155376   ⟸   ENSMUST00000231161
RefSeq Acc Id: ENSMUSP00000080468   ⟸   ENSMUST00000081776
RefSeq Acc Id: ENSMUSP00000086875   ⟸   ENSMUST00000089452
RefSeq Acc Id: NP_001402939   ⟸   NM_001416010
- UniProtKB: Q8VDU3 (UniProtKB/TrEMBL),   Q6PF90 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001402940   ⟸   NM_001416011
- UniProtKB: Q8VDU3 (UniProtKB/TrEMBL),   Q6PF90 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001402942   ⟸   NM_001416013
- UniProtKB: Q8VDU3 (UniProtKB/TrEMBL),   Q6PF90 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001402941   ⟸   NM_001416012
- UniProtKB: Q8VDU3 (UniProtKB/TrEMBL),   Q6PF90 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8VDU3-F1-model_v2 AlphaFold Q8VDU3 1-310 view protein structure

Promoters
RGD ID:8684196
Promoter ID:EPDNEW_M20129
Type:multiple initiation site
Name:Apol9a_1
Description:Mus musculus apolipoprotein L 9a , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381577,411,080 - 77,411,140EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3606001 AgrOrtholog
Ensembl Genes ENSMUSG00000057346 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000081776 ENTREZGENE
  ENSMUST00000081776.11 UniProtKB/TrEMBL
  ENSMUST00000089452 ENTREZGENE
  ENSMUST00000089452.6 UniProtKB/TrEMBL
  ENSMUST00000231161.2 UniProtKB/TrEMBL
InterPro ApoL UniProtKB/TrEMBL
KEGG Report mmu:223672 UniProtKB/TrEMBL
MGD MGI:3606001 ENTREZGENE
NCBI Gene 223672 ENTREZGENE
PANTHER ApoL UniProtKB/TrEMBL
  APOL9A PROTEIN-RELATED UniProtKB/TrEMBL
Pfam ApoL UniProtKB/TrEMBL
PhenoGen Apol9a PhenoGen
UniProt A0A2R8W6T2_MOUSE UniProtKB/TrEMBL
  Q6PF90 ENTREZGENE, UniProtKB/TrEMBL
  Q8VDU3 ENTREZGENE, UniProtKB/TrEMBL