Sgo2b (shugoshin 2B) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Sgo2b (shugoshin 2B) Mus musculus
Analyze
No known orthologs.
Symbol: Sgo2b
Name: shugoshin 2B
RGD ID: 1623748
MGI Page MGI
Description: Predicted to be involved in homologous chromosome segregation; meiotic sister chromatid cohesion; and mitotic sister chromatid segregation. Predicted to be located in chromosome, centromeric region and nuclear body. Predicted to be active in kinetochore. Orthologous to human SGO2 (shugoshin 2).
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: EG244495; Gm4975; predicted gene 4975; Sgo; Sgol2b; shugoshin like 2b; shugoshin like 2b (S. pombe)
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39864,377,728 - 64,405,204 (-)NCBIGRCm39mm39
GRCm39 Ensembl864,377,728 - 64,405,282 (-)Ensembl
GRCm38863,924,694 - 63,952,170 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl863,924,694 - 63,952,248 (-)EnsemblGRCm38mm10GRCm38
MGSCv37866,403,509 - 66,422,017 (-)NCBIGRCm37mm9NCBIm37
MGSCv36866,816,886 - 66,844,362 (-)NCBImm8
Celera866,491,656 - 66,510,160 (-)NCBICelera
Cytogenetic Map8B3.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:14610273   PMID:21873635  


Genomics


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558870Eae36_mexperimental allergic encephalomyelitis susceptibility 36 (mouse)Not determined81472316071045600Mouse
1357811Orq3_movulation rate QTL 3 (mouse)Not determined83201654471287993Mouse
4141437W10q14_mweight 10 weeks QTL 14 (mouse)Not determined3201654471287993Mouse
4141172W6q9_mweight 6 weeks QTL 9 (mouse)Not determined3201654471287993Mouse
4140966Egq12_mearly growth QTL 12 (mouse)Not determined3201654471287993Mouse
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1301936Trigq2_mtriglyceride QTL 2 (mouse)Not determined83383736267837502Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
1301544Iba3_minduction of brown adipocytes 3 (mouse)Not determined84429488078295025Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84763703081637146Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84763703081637146Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84773713481737254Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84879293982793021Mouse
14746987Manh64_mmandible shape 64 (mouse)85005330684053306Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85005330684053306Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:91
Count of miRNA genes:91
Interacting mature miRNAs:91
Transcripts:ENSMUST00000179944
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000179944   ⟹   ENSMUSP00000136323
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl864,377,728 - 64,405,204 (-)Ensembl
GRCm38.p6 Ensembl863,924,694 - 63,952,170 (-)Ensembl
RefSeq Acc Id: ENSMUST00000210915
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl864,377,728 - 64,405,282 (-)Ensembl
GRCm38.p6 Ensembl863,924,694 - 63,952,248 (-)Ensembl
RefSeq Acc Id: NM_001195687   ⟹   NP_001182616
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39864,377,728 - 64,405,204 (-)NCBI
GRCm38863,924,694 - 63,952,170 (-)NCBI
Celera866,491,638 - 66,518,080 (-)ENTREZGENE
cM Map8 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001182616 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ADN20836 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001182616   ⟸   NM_001195687
- UniProtKB: J3QMK1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000136323   ⟸   ENSMUST00000179944


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3644562 AgrOrtholog
Ensembl Genes ENSMUSG00000094443 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000136323 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000179944 ENTREZGENE, UniProtKB/TrEMBL
InterPro SGOL2 UniProtKB/TrEMBL
  Shugoshin UniProtKB/TrEMBL
KEGG Report mmu:244495 UniProtKB/TrEMBL
MGD MGI:3644562 ENTREZGENE
NCBI Gene 244495 ENTREZGENE
PANTHER PTHR21577 UniProtKB/TrEMBL
  PTHR21577:SF5 UniProtKB/TrEMBL
PhenoGen Sgo2b PhenoGen
UniProt E2IUN6_MOUSE UniProtKB/TrEMBL
  J3QMK1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-05-16 Sgo2b  shugoshin 2B  Sgol2b  shugoshin like 2b (S. pombe)  Symbol and/or name change 5135510 APPROVED
2015-02-03 Sgol2b  shugoshin like 2b (S. pombe)  Gm4975  predicted gene 4975  Symbol and/or name change 5135510 APPROVED