Nup54 (nucleoporin 54) - Rat Genome Database

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Gene: Nup54 (nucleoporin 54) Mus musculus
Analyze
Symbol: Nup54
Name: nucleoporin 54
RGD ID: 1623726
MGI Page MGI
Description: Predicted to enable identical protein binding activity. Predicted to be a structural constituent of nuclear pore. Predicted to be involved in several processes, including nuclear pore organization; protein localization to nucleus; and regulation of protein import into nucleus. Predicted to act upstream of or within mRNA transport and protein transport. Predicted to be located in nuclear envelope. Predicted to be part of nuclear pore central transport channel. Is expressed in pancreas epithelium. Human ortholog(s) of this gene implicated in dystonia. Orthologous to human NUP54 (nucleoporin 54).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 3110079L04Rik; 54 kDa nucleoporin; 54kD; 54kDa; nuclear pore complex protein Nup54; nucleoporin 54kDa; nucleoporin Nup54
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm15790   Gm17900   Gm38395  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39592,563,399 - 92,583,117 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl592,563,399 - 92,583,078 (-)EnsemblGRCm39 Ensembl
GRCm38592,415,540 - 92,435,259 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl592,415,540 - 92,435,219 (-)EnsemblGRCm38mm10GRCm38
MGSCv37592,844,566 - 92,864,225 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36593,490,746 - 93,510,323 (-)NCBIMGSCv36mm8
Celera590,564,003 - 90,583,663 (-)NCBICelera
Cytogenetic Map5E2NCBI
cM Map546.75NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Regulation of mRNA trafficking by nuclear pore complexes. Bonnet A and Palancade B, Genes (Basel). 2014 Sep 2;5(3):767-91. doi: 10.3390/genes5030767.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12791264   PMID:12904583   PMID:14610273   PMID:15489334   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:18554416   PMID:21873635   PMID:31146259  


Genomics

Comparative Map Data
Nup54
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39592,563,399 - 92,583,117 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl592,563,399 - 92,583,078 (-)EnsemblGRCm39 Ensembl
GRCm38592,415,540 - 92,435,259 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl592,415,540 - 92,435,219 (-)EnsemblGRCm38mm10GRCm38
MGSCv37592,844,566 - 92,864,225 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36593,490,746 - 93,510,323 (-)NCBIMGSCv36mm8
Celera590,564,003 - 90,583,663 (-)NCBICelera
Cytogenetic Map5E2NCBI
cM Map546.75NCBI
NUP54
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38476,114,664 - 76,148,397 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl476,107,562 - 76,148,485 (-)EnsemblGRCh38hg38GRCh38
GRCh37477,035,817 - 77,069,550 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36477,254,841 - 77,288,679 (-)NCBINCBI36Build 36hg18NCBI36
Build 34477,392,996 - 77,426,834NCBI
Celera474,336,017 - 74,369,792 (-)NCBICelera
Cytogenetic Map4q21.1NCBI
HuRef472,788,244 - 72,821,694 (-)NCBIHuRef
CHM1_1477,012,297 - 77,046,159 (-)NCBICHM1_1
T2T-CHM13v2.0479,455,330 - 79,489,069 (-)NCBIT2T-CHM13v2.0
Nup54
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81415,901,936 - 15,920,335 (+)NCBIGRCr8
mRatBN7.21415,617,630 - 15,636,029 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1415,617,679 - 15,636,028 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1415,625,954 - 15,644,122 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01416,944,808 - 16,962,972 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01415,640,226 - 15,658,388 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01417,123,434 - 17,141,832 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1417,123,360 - 17,141,767 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01417,039,514 - 17,057,924 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41417,178,761 - 17,197,062 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11417,178,760 - 17,197,061 (+)NCBI
Celera1415,012,204 - 15,030,485 (+)NCBICelera
Cytogenetic Map14p22NCBI
Nup54
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955433853,921 - 879,861 (-)NCBIChiLan1.0ChiLan1.0
NUP54
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2353,924,149 - 53,958,784 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1454,113,869 - 54,150,174 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0448,057,553 - 48,091,471 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1453,896,058 - 53,929,596 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl453,896,058 - 53,929,596 (+)Ensemblpanpan1.1panPan2
NUP54
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.132751,568 - 782,342 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl32751,982 - 782,314 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3241,100,154 - 41,131,148 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.032777,963 - 808,974 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl32777,883 - 808,921 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.132776,011 - 807,023 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.032730,301 - 761,292 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03239,408,219 - 39,439,234 (+)NCBIUU_Cfam_GSD_1.0
Nup54
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528511,345,313 - 11,377,591 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936676133,782 - 161,938 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936676130,877 - 161,914 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUP54
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl871,792,155 - 71,833,157 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1871,792,153 - 71,833,180 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2875,992,615 - 76,028,904 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NUP54
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1724,616,645 - 24,649,595 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl724,613,767 - 24,650,359 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660372,964,814 - 2,997,872 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nup54
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475714,800,780 - 14,840,115 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nup54
971 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:650
Count of miRNA genes:368
Interacting mature miRNAs:423
Transcripts:ENSMUST00000038514, ENSMUST00000122893, ENSMUST00000123694, ENSMUST00000130156, ENSMUST00000135112, ENSMUST00000142525, ENSMUST00000146470
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
4140990Lgq6_mlate growth QTL 6 (mouse)Not determined32133234100777931Mouse
4141219W10q16_mweight 10 weeks QTL 16 (mouse)Not determined32133234100777931Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537581488112465722Mouse
11041665Lmr24_mleishmaniasis resistance 24 (mouse)552694462107321041Mouse
11041899Lmr24a_mleishmaniasis resistance 24a (mouse)552694462107321041Mouse
4142064Tmc1m4_mTmc1 modifier 4 (mouse)Not determined554500177127001072Mouse
1301243Bmd2_mbone mineral density 2 (mouse)Not determined555388334100455525Mouse
4142317Rgcs1_mretinal ganglion cell susceptible 1 (mouse)Not determined55388334108762627Mouse
11040591Lmr3c_mleishmaniasis resistance 3c (mouse)55960280193602980Mouse
11040592Lmr3d_mleishmaniasis resistance 3d (mouse)55960280193602980Mouse
11040589Lmr3a_mleishmaniasis resistance 3a (mouse)55960280193602980Mouse
11040590Lmr3b_mleishmaniasis resistance 3b (mouse)55960280193602980Mouse
1301843Listr1_mlisteriosis resistance 1 (mouse)Not determined56024608194246203Mouse
13464247Ahl14_mage related hearing loss, early onset 14 (mouse)56040306294403160Mouse
11252124Modvl6_mmodifier of vacuolated lens 6 (mouse)56265056896650688Mouse
4142428Modvl1_mmodifier of vacuolated lens 1 (mouse)Not determined6265056896650688Mouse
1301010ahl2_mage related hearing loss 2 (mouse)Not determined56265056896650688Mouse
13464250Ahl15_mage related hearing loss, early onset 15 (mouse)56265056896650688Mouse
10045972Tir5_mtrypanosome infection response 5 (mouse)Not determined563705442104387065Mouse
11049560Lmr24d_mleishmaniasis resistance 24d (mouse)56437487798374996Mouse
12904739M2fscn2_mmodifier 2 of FSCN2 (mouse)566529661100529661Mouse
12904740M1fscn2_mmodifier 1 of Fscn2 (mouse)566529661100529661Mouse
26884395Humsd2_mhumerus midshaft diameter 2, 10 week (mouse)570057343132528839Mouse
10043993Hbnr10_mHeligmosomoides bakeri nematode resistance 10 (mouse)Not determined572418876106419011Mouse
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572857343139985755Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
13506928Recrq8_mrecombination rate in male meiosis QTL 8 (mouse)574460661132528839Mouse
4141124Dshv2_mdorsal hippocampal volume 2 (mouse)Not determined57531534898019803Mouse
1357431Cia27_mcollagen induced arthritis 27 (mouse)Not determined575315348120018629Mouse
4141438Skmw13_mskeletal muscle weight 13 (mouse)Not determined576190263110190479Mouse
4141505Chlq14_mcirculating hormone level QTL 14 (mouse)Not determined576280786110280917Mouse
1300986Hdlq2_mHDL QTL 2 (mouse)Not determined576280786110280917Mouse
1301691Cdcs10_mcytokine deficiency colitis susceptibility 10 (mouse)Not determined576280786110280917Mouse
1301829Thyls2_mthymic lymphoma susceptibility 2 (mouse)Not determined576445064110445225Mouse
1301713Dbsty2_mdiabesity 2 (mouse)Not determined576445064110445225Mouse
13464249Ahl16_mage related hearing loss, early onset 16 (mouse)576445064110445225Mouse
1300931Cocrb6_mcocaine related behavior 6 (mouse)Not determined576445064110445225Mouse
12910784Pwgrq15_mpost-weaning growth rate QTL 15 (mouse)57717582397658215Mouse
12910816Ogrq2_moverall growth rate QTL 2 (mouse)57717582397658215Mouse
10401246Bglu13_mblood glucose level 13 (mouse)Not determined579539640113539786Mouse
10755524Mono1_mmonocyte differential 1 (mouse)580849259114849259Mouse
1301419Cypr3_mcytokine production 3 (mouse)Not determined581019649115019803Mouse
10401245Bglu18_mblood glucose level 18 (mouse)Not determined582838468116838597Mouse
13464242Ahl17_mage related hearing loss, early onset 17 (mouse)582838468116838597Mouse
10043958Chldq12_mcholesterol and HDL QTL 12 (mouse)Not determined587386871121387065Mouse
1301126Bwem1_mbody weight day 30 males 1 (mouse)Not determined587386871121387065Mouse
13464241Ahl18_mage related hearing loss, early onset 18 (mouse)587386871121387065Mouse
1300801Drb2_mdopamine receptor binding 2 (mouse)Not determined587386871121387065Mouse
1301399Cpfd3_mcerebellum pattern fissures (mouse)Not determined587386871121387065Mouse
1357725Eae39_mexperimental allergic encephalomyelitis 39 (mouse)Not determined589418876118864028Mouse
1300968Skts4_mskin tumor susceptibility 4 (mouse)Not determined589418876124238239Mouse
1301362Prnr1_mprion resistance 1 (mouse)Not determined589418876146787935Mouse
11049562Lmr24f_mleishmaniasis resistance 24f (mouse)590320962124321041Mouse
1301457Cfsw2_mcystic fibrosis survival to weaning 2 (mouse)Not determined590561006124561151Mouse
1300993Hycdc_mhypercapnic duty cycle (mouse)Not determined590561006124561151Mouse

Markers in Region
AI060908  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381129,796,921 - 129,797,029UniSTSGRCm38
MGSCv371131,693,498 - 131,693,606UniSTSGRCm37
Celera1132,424,066 - 132,424,174UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map5E3UniSTS
Whitehead/MRC_RH11683.84UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001359995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_183392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC122365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK014260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK133841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC044303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC068114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ032638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ049542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000038514   ⟹   ENSMUSP00000046540
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl592,563,399 - 92,583,078 (-)Ensembl
GRCm38.p6 Ensembl592,415,540 - 92,435,219 (-)Ensembl
RefSeq Acc Id: ENSMUST00000122893
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl592,575,880 - 92,582,950 (-)Ensembl
GRCm38.p6 Ensembl592,428,021 - 92,435,091 (-)Ensembl
RefSeq Acc Id: ENSMUST00000123694
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl592,564,068 - 92,565,831 (-)Ensembl
GRCm38.p6 Ensembl592,416,209 - 92,417,972 (-)Ensembl
RefSeq Acc Id: ENSMUST00000130156   ⟹   ENSMUSP00000120937
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl592,578,767 - 92,582,616 (-)Ensembl
GRCm38.p6 Ensembl592,430,908 - 92,434,757 (-)Ensembl
RefSeq Acc Id: ENSMUST00000135112   ⟹   ENSMUSP00000117237
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl592,578,759 - 92,582,982 (-)Ensembl
GRCm38.p6 Ensembl592,430,900 - 92,435,123 (-)Ensembl
RefSeq Acc Id: ENSMUST00000142525
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl592,573,609 - 92,582,405 (-)Ensembl
GRCm38.p6 Ensembl592,425,750 - 92,434,546 (-)Ensembl
RefSeq Acc Id: ENSMUST00000146470   ⟹   ENSMUSP00000121171
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl592,576,151 - 92,582,973 (-)Ensembl
GRCm38.p6 Ensembl592,428,292 - 92,435,114 (-)Ensembl
RefSeq Acc Id: ENSMUST00000201228
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl592,570,836 - 92,572,790 (-)Ensembl
GRCm38.p6 Ensembl592,422,977 - 92,424,931 (-)Ensembl
RefSeq Acc Id: NM_001359995   ⟹   NP_001346924
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39592,563,399 - 92,583,058 (-)NCBI
GRCm38592,415,540 - 92,435,199 (-)NCBI
Sequence:
RefSeq Acc Id: NM_183392   ⟹   NP_899248
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39592,563,399 - 92,583,058 (-)NCBI
GRCm38592,415,540 - 92,435,199 (-)NCBI
MGSCv37592,844,566 - 92,864,225 (-)RGD
Celera590,564,003 - 90,583,663 (-)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006534958   ⟹   XP_006535021
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39592,563,404 - 92,582,792 (-)NCBI
GRCm38592,415,545 - 92,434,934 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006534959   ⟹   XP_006535022
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39592,563,404 - 92,583,109 (-)NCBI
GRCm38592,415,545 - 92,435,255 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017320895   ⟹   XP_017176384
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39592,563,404 - 92,583,109 (-)NCBI
GRCm38592,415,545 - 92,435,255 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254531   ⟹   XP_030110391
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39592,563,404 - 92,582,528 (-)NCBI
GRCm38592,415,545 - 92,434,665 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004942520
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39592,563,404 - 92,583,117 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_899248   ⟸   NM_183392
- Peptide Label: isoform 2
- UniProtKB: Q3TSI2 (UniProtKB/Swiss-Prot),   Q8BU42 (UniProtKB/Swiss-Prot),   Q8BTS4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006535022   ⟸   XM_006534959
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006535021   ⟸   XM_006534958
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017176384   ⟸   XM_017320895
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: NP_001346924   ⟸   NM_001359995
- Peptide Label: isoform 1
RefSeq Acc Id: XP_030110391   ⟸   XM_030254531
- Peptide Label: isoform X1
RefSeq Acc Id: ENSMUSP00000120937   ⟸   ENSMUST00000130156
RefSeq Acc Id: ENSMUSP00000121171   ⟸   ENSMUST00000146470
RefSeq Acc Id: ENSMUSP00000117237   ⟸   ENSMUST00000135112
RefSeq Acc Id: ENSMUSP00000046540   ⟸   ENSMUST00000038514

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BTS4-F1-model_v2 AlphaFold Q8BTS4 1-510 view protein structure

Promoters
RGD ID:6887182
Promoter ID:EPDNEW_M7042
Type:initiation region
Name:Nup54_1
Description:Mus musculus nucleoporin 54 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38592,435,123 - 92,435,183EPDNEW
RGD ID:6837971
Promoter ID:MM_KWN:42902
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000071193,   OTTMUST00000071221,   OTTMUST00000071222,   OTTMUST00000071223,   OTTMUST00000071224,   UC008YDL.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36592,864,106 - 92,864,952 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1920460 AgrOrtholog
Ensembl Genes ENSMUSG00000034826 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000038514 ENTREZGENE
  ENSMUST00000038514.15 UniProtKB/Swiss-Prot
  ENSMUST00000130156.2 UniProtKB/TrEMBL
  ENSMUST00000135112.8 UniProtKB/TrEMBL
  ENSMUST00000146470.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.170 UniProtKB/Swiss-Prot
  Single helix bin UniProtKB/Swiss-Prot
InterPro Nup54/Nup57/Nup44 UniProtKB/Swiss-Prot
  Nup54_alpha-helical_dom UniProtKB/Swiss-Prot
  Nup54_C UniProtKB/Swiss-Prot
KEGG Report mmu:269113 UniProtKB/Swiss-Prot
MGD MGI:1920460 ENTREZGENE
NCBI Gene 269113 ENTREZGENE
PANTHER NUCLEOPORIN P54 UniProtKB/Swiss-Prot
  PTHR13000 UniProtKB/Swiss-Prot
Pfam Nup54 UniProtKB/Swiss-Prot
  Nup54_C UniProtKB/Swiss-Prot
PhenoGen Nup54 PhenoGen
UniProt D3Z5F5_MOUSE UniProtKB/TrEMBL
  D6RFN7_MOUSE UniProtKB/TrEMBL
  F6UKR5_MOUSE UniProtKB/TrEMBL
  NUP54_MOUSE UniProtKB/Swiss-Prot
  Q3TSI2 ENTREZGENE
  Q8BTS4 ENTREZGENE
  Q8BU42 ENTREZGENE
UniProt Secondary Q3TSI2 UniProtKB/Swiss-Prot
  Q8BU42 UniProtKB/Swiss-Prot