Tex13c3 (TEX13 family member C3) - Rat Genome Database

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Gene: Tex13c3 (TEX13 family member C3) Mus musculus
Analyze
No known orthologs.
Symbol: Tex13c3
Name: TEX13 family member C3
RGD ID: 1623716
MGI Page MGI
Description: Orthologous to human TEX13C (TEX13 family member C) and TEX13D (TEX13 family member D); INTERACTS WITH genistein.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: BC049702; cDNA sequence BC049702; Gm720; hypothetical protein LOC278255; MGC58623; uncharacterized protein LOC278255
RGD Orthologs
Alliance Genes
More Info homologs ...
Related Pseudogenes: Gm40  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X19,345,659 - 19,347,558 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX19,345,659 - 19,347,558 (-)EnsemblGRCm39 Ensembl
GRCm38X19,479,420 - 19,481,319 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX19,479,420 - 19,481,319 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X19,056,550 - 19,058,445 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X18,636,383 - 18,638,278 (-)NCBIMGSCv36mm8
CeleraX17,055,878 - 17,057,773 (-)NCBICelera
Cytogenetic MapXA1.3NCBI
cM MapX14.88NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
genistein  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:12477932   PMID:21267068   PMID:21873635  


Genomics

Variants

.
Variants in Tex13c3
50 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:99
Count of miRNA genes:99
Interacting mature miRNAs:99
Transcripts:ENSMUST00000089246
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302195Pbwg10_mpostnatal body weight growth 10 (mouse)Not determinedX126202173Mouse
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
1301551Spha1_msperm head anomaly 1 (mouse)Not determinedX1026622539921652Mouse
13208553Wght11_mweight 11 (mouse)X1186623959045360Mouse
13208557Lgth13_mbody length 13 (mouse)X1186623959045360Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000089246   ⟹   ENSMUSP00000086657
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX19,345,659 - 19,347,558 (-)Ensembl
GRCm38.p6 EnsemblX19,479,420 - 19,481,319 (-)Ensembl
RefSeq Acc Id: NM_207524   ⟹   NP_997407
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X19,345,659 - 19,347,558 (-)NCBI
GRCm38X19,479,420 - 19,481,319 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_997407 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH49702 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000086657
  ENSMUSP00000086657.6
Reference Protein Sequences
RefSeq Acc Id: NP_997407   ⟸   NM_207524
- UniProtKB: Q810P0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000086657   ⟸   ENSMUST00000089246

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q810P0-F1-model_v2 AlphaFold Q810P0 1-219 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3037654 AgrOrtholog
Ensembl Genes ENSMUSG00000068149 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000089246 ENTREZGENE
  ENSMUST00000089246.6 UniProtKB/TrEMBL
InterPro TEX13 UniProtKB/TrEMBL
MGD MGI:3037654 ENTREZGENE
NCBI Gene 278255 ENTREZGENE
PANTHER TEX13 FAMILY MEMBER C3 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
Pfam TEX13 UniProtKB/TrEMBL
PhenoGen Tex13c3 PhenoGen
UniProt Q810P0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-11-15 Tex13c3  TEX13 family member C3  BC049702  cDNA sequence BC049702  Symbol and/or name change 5135510 APPROVED