Krtap10-10 (keratin associated protein 10-10) - Rat Genome Database

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Gene: Krtap10-10 (keratin associated protein 10-10) Mus musculus
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Symbol: Krtap10-10
Name: keratin associated protein 10-10
RGD ID: 1623545
MGI Page MGI
Description: Predicted to enable identical protein binding activity. Orthologous to several human genes including KRTAP10-11 (keratin associated protein 10-11); KRTAP10-3 (keratin associated protein 10-3); and KRTAP10-5 (keratin associated protein 10-5).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: EG544710
RGD Orthologs
Human
Rat
Bonobo
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391077,671,781 - 77,673,085 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1077,671,781 - 77,673,086 (+)EnsemblGRCm39 Ensembl
GRCm381077,835,947 - 77,837,251 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1077,835,947 - 77,837,252 (+)EnsemblGRCm38mm10GRCm38
MGSCv371077,298,692 - 77,299,996 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361077,239,043 - 77,240,348 (+)NCBIMGSCv36mm8
Celera1078,881,420 - 78,882,724 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:18721477  


Genomics

Comparative Map Data
Krtap10-10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391077,671,781 - 77,673,085 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1077,671,781 - 77,673,086 (+)EnsemblGRCm39 Ensembl
GRCm381077,835,947 - 77,837,251 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1077,835,947 - 77,837,252 (+)EnsemblGRCm38mm10GRCm38
MGSCv371077,298,692 - 77,299,996 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361077,239,043 - 77,240,348 (+)NCBIMGSCv36mm8
Celera1078,881,420 - 78,882,724 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
KRTAP10-10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382144,637,356 - 44,638,455 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2144,637,356 - 44,638,455 (+)EnsemblGRCh38hg38GRCh38
GRCh372146,057,273 - 46,058,372 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362144,881,701 - 44,882,800 (+)NCBINCBI36Build 36hg18NCBI36
Build 342144,881,700 - 44,882,798NCBI
Celera2131,164,909 - 31,166,008 (+)NCBICelera
Cytogenetic Map21q22.3NCBI
HuRef2131,431,441 - 31,432,525 (+)NCBIHuRef
CHM1_12145,617,898 - 45,618,982 (+)NCBICHM1_1
T2T-CHM13v2.02142,997,807 - 42,998,906 (+)NCBIT2T-CHM13v2.0
Krtap10-10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82010,854,561 - 10,863,972 (+)NCBIGRCr8
mRatBN7.22010,854,951 - 10,864,402 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.02011,579,788 - 11,580,868 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02013,745,737 - 13,746,609 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42011,241,648 - 11,242,520 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2012,366,879 - 12,367,959 (+)NCBICelera
Cytogenetic Map20p12NCBI
LOC117977363
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22240,683,499 - 40,684,613 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12135,554,170 - 35,555,279 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02130,932,073 - 30,933,125 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3

Variants

.
Variants in Krtap10-10
45 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300882Ath17_matherosclerosis 17 (mouse)Not determined105109149085091639Mouse
1300597Skull14_mskull morphology 14 (mouse)Not determined104984818783848412Mouse
1300533Aem3_manti-erythrocyte autoantibody modifier 3 (mouse)Not determined106549093899491121Mouse
1301380Cia8_mcollagen induced arthritis QTL 8 (mouse)Not determined105149340082491121Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101010826587401095Mouse
1300975Fembrs3_mfemur breaking strength 3 (mouse)Not determined1075338568109338767Mouse
1301737Insq9_minsulin QTL 9 (mouse)Not determined106549093899491121Mouse
1301502Eae17_msusceptibility to experimental allergic encephalomyelitis 17 (mouse)Not determined105109149085091639Mouse
1301966Lifespan2_mlife span 2 (mouse)Not determined104984822283848397Mouse
1302150Bbaa18_mB.burgdorferi-associated arthritis 18 (mouse)Not determined104933801283338157Mouse
1302035Lmb4_mlupus in MRL and B6 F2 cross (mouse)Not determined106684818792258673Mouse
1302060El3_mepilepsy 3 (mouse)Not determined106549093899491121Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018259333125575232Mouse
1301787Bsc1_mbrain size control 1 (mouse)Not determined105851696992517096Mouse
1357632Vtbt9_mvertebral trabecular bone trait 9 (mouse)Not determined1075338568109338767Mouse
1357656Hrtq3_mheart weight QTL 3 (mouse)Not determined101270405184079784Mouse
1357737Hpcr2_mhepatocarcinogen resistance 2 (mouse)Not determined104984822283848397Mouse
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
1357825Kidpq2_mkidney weight percentage QTL 2 (mouse)Not determined101270405184079784Mouse
1357864Scfpq1_msubcutaneous fat pad percentage QTL 1 (mouse)Not determined101270405184079784Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021408154114217230Mouse
4141943W6q6_mweight 6 weeks QTL 6 (mouse)Not determined1270405184079784Mouse
4141956Egq7_mearly growth QTL 7 (mouse)Not determined1270405184079784Mouse
4142107Obrq12_mobesity resistance QTL 12 (mouse)Not determined7398721682491121Mouse
4142137Femwf3_mfemur work to failure 3 (mouse)Not determined75338568109338767Mouse
4142169Pbwg16_mpostnatal body weight growth 16 (mouse)Not determined104984818783848412Mouse
4142272W10q5_mweight 10 weeks QTL 5 (mouse)Not determined1270405184079784Mouse
4142313Angvq1_mangiogenesis by VEGF QTL 1 (mouse)Not determined4672040382491121Mouse
4142380W3q11_mweight 3 weeks QTL 11 (mouse)Not determined1270405184079784Mouse
11353832Pcholq4_mplasma cholesterol QTL 4 (mouse)1073987216125515907Mouse
11353843Gluq1_mblood glucose QTL 1 (mouse)1073987216125515907Mouse
11039497Ltpr5a_mLeishmania tropica response 5a (mouse)1073506901107507047Mouse
10045641Jckm3_mjuvenile cystic kidney modifier 3 (mouse)Not determined104984818783848412Mouse
13208560Wght9_mweight 9 (mouse)1059835822120835905Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
14746991Manh68_mmandible shape 68 (mouse)105228049786280497Mouse
39128215Lwq17_mliver weight QTL 17 (mouse)101270405184079784Mouse
26884403Cvht8_mcranial vault height 8, 16 week (mouse)102287589991035862Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069735830130430862Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045476096120635905Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1044876096115935905Mouse
26884424Zlq9_mzygomatic length QTL 9, 16 week (mouse)1063935779115935905Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024675898121035905Mouse
26884430Zlq5_mzygomatic length QTL 5, 10 week (mouse)1067835830124835905Mouse
26884447Sklq9_mskull length QTL 9, 10 week (mouse)1067335830111735905Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059335822122335905Mouse

Markers in Region
AA589524  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371077,316,328 - 77,316,416UniSTSGRCm37
Celera1078,899,304 - 78,899,392UniSTS
Cytogenetic Map10C1UniSTS
cM Map10 UniSTS
Whitehead/MRC_RH10878.6UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000218843   ⟹   ENSMUSP00000151758
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1077,671,781 - 77,673,086 (+)Ensembl
GRCm38.p6 Ensembl1077,835,947 - 77,837,252 (+)Ensembl
RefSeq Acc Id: NM_001024709   ⟹   NP_001019880
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391077,671,781 - 77,673,085 (+)NCBI
GRCm381077,835,947 - 77,837,251 (+)ENTREZGENE
MGSCv371077,298,692 - 77,299,996 (+)RGD
Celera1078,881,420 - 78,882,724 (+)RGD
cM Map10 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001019880 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAC37648 (Get FASTA)   NCBI Sequence Viewer  
  EDL31776 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000151758
  ENSMUSP00000151758.2
RefSeq Acc Id: NP_001019880   ⟸   NM_001024709
- UniProtKB: A0A1W2P7T6 (UniProtKB/TrEMBL),   Q8BV88 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000151758   ⟸   ENSMUST00000218843

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A1W2P7T6-F1-model_v2 AlphaFold A0A1W2P7T6 1-217 view protein structure

Promoters
RGD ID:6819501
Promoter ID:MM_KWN:4687
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:ENSMUST00000092369,   NM_001135991
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361077,289,741 - 77,290,241 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3645300 AgrOrtholog
Ensembl Genes ENSMUSG00000112223 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000218843 ENTREZGENE
  ENSMUST00000218843.2 UniProtKB/TrEMBL
InterPro Keratin_B2 UniProtKB/TrEMBL
KEGG Report mmu:544710 UniProtKB/TrEMBL
MGD MGI:3645300 ENTREZGENE
NCBI Gene 544710 ENTREZGENE
PANTHER KERATIN-ASSOCIATED PROTEIN 10-6 UniProtKB/TrEMBL
  Keratin_B2 UniProtKB/TrEMBL
Pfam Keratin_B2_2 UniProtKB/TrEMBL
PhenoGen Krtap10-10 PhenoGen
UniProt A0A1W2P7T6 ENTREZGENE, UniProtKB/TrEMBL
  Q8BV88 ENTREZGENE, UniProtKB/TrEMBL