Srcap (Snf2-related CREBBP activator protein) - Rat Genome Database

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Gene: Srcap (Snf2-related CREBBP activator protein) Mus musculus
Analyze
Symbol: Srcap
Name: Snf2-related CREBBP activator protein
RGD ID: 1623538
MGI Page MGI
Description: Predicted to enable ATP hydrolysis activity and histone binding activity. Predicted to be located in Golgi apparatus; nuclear body; and perinuclear region of cytoplasm. Predicted to be part of Swr1 complex. Is expressed in cerebral cortex ventricular layer; cortical plate; early conceptus; inner cell mass; and oocyte. Human ortholog(s) of this gene implicated in Floating-Harbor syndrome. Orthologous to human SRCAP (Snf2 related CREBBP activator protein).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: B930091H02Rik; D030022P06Rik; F630004O05Rik; helicase SRCAP; Snf2-related CBP activator protein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397127,111,155 - 127,160,391 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7127,111,155 - 127,160,391 (+)EnsemblGRCm39 Ensembl
GRCm387127,511,983 - 127,561,219 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7127,511,983 - 127,561,219 (+)EnsemblGRCm38mm10GRCm38
MGSCv377134,655,497 - 134,710,454 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367134,704,737 - 134,708,785 (+)NCBIMGSCv36mm8
Celera7127,357,021 - 127,410,240 (+)NCBICelera
Cytogenetic Map7F3NCBI
cM Map769.56NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. The INO80 family of chromatin-remodeling enzymes: regulators of histone variant dynamics. Watanabe S and Peterson CL, Cold Spring Harb Symp Quant Biol. 2010;75:35-42. doi: 10.1101/sqb.2010.75.063. Epub 2011 Apr 18.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273  
PMID:14691545   PMID:15618518   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16602821   PMID:16634648   PMID:17967808   PMID:18799693   PMID:20412781   PMID:21267068   PMID:21873635  
PMID:29091030   PMID:32449550   PMID:32968282   PMID:34321999   PMID:37863054  


Genomics

Comparative Map Data
Srcap
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397127,111,155 - 127,160,391 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7127,111,155 - 127,160,391 (+)EnsemblGRCm39 Ensembl
GRCm387127,511,983 - 127,561,219 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7127,511,983 - 127,561,219 (+)EnsemblGRCm38mm10GRCm38
MGSCv377134,655,497 - 134,710,454 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367134,704,737 - 134,708,785 (+)NCBIMGSCv36mm8
Celera7127,357,021 - 127,410,240 (+)NCBICelera
Cytogenetic Map7F3NCBI
cM Map769.56NCBI
SRCAP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381630,699,171 - 30,741,409 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1630,698,209 - 30,741,409 (+)EnsemblGRCh38hg38GRCh38
GRCh371630,710,492 - 30,752,730 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361630,617,963 - 30,658,951 (+)NCBINCBI36Build 36hg18NCBI36
Celera1629,546,060 - 29,587,086 (-)NCBICelera
Cytogenetic Map16p11.2NCBI
HuRef1628,273,194 - 28,314,260 (+)NCBIHuRef
CHM1_11632,027,658 - 32,068,682 (+)NCBICHM1_1
T2T-CHM13v2.01631,086,152 - 31,128,418 (+)NCBIT2T-CHM13v2.0
Srcap
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81191,554,043 - 191,607,096 (+)NCBIGRCr8
mRatBN7.21182,123,562 - 182,172,643 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1182,118,416 - 182,176,610 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01198,957,764 - 199,007,576 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1198,960,542 - 199,007,347 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01205,958,965 - 206,015,458 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41186,800,822 - 186,846,135 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1179,774,575 - 179,824,130 (+)NCBICelera
Cytogenetic Map1q37NCBI
Srcap
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554937,559,723 - 7,602,535 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554937,554,724 - 7,602,560 (+)NCBIChiLan1.0ChiLan1.0
SRCAP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21833,903,356 - 33,945,048 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11638,704,950 - 38,746,507 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01624,229,869 - 24,271,427 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11631,066,370 - 31,106,312 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1631,065,964 - 31,106,312 (+)Ensemblpanpan1.1panPan2
SRCAP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1617,437,097 - 17,470,724 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha619,011,978 - 19,045,619 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0617,568,787 - 17,602,436 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl617,569,183 - 17,599,773 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1617,369,046 - 17,402,684 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0617,286,733 - 17,320,570 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0617,599,551 - 17,633,197 (-)NCBIUU_Cfam_GSD_1.0
Srcap
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344124,998,711 - 125,033,323 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650113,096,840 - 13,131,183 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650113,095,690 - 13,131,183 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SRCAP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl317,664,349 - 17,700,219 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1317,662,374 - 17,702,862 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2318,110,414 - 18,159,216 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SRCAP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1527,386,923 - 27,428,360 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl527,389,572 - 27,427,953 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660682,044,445 - 2,092,084 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Srcap
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478213,817,999 - 13,862,046 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478213,818,019 - 13,862,379 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Srcap
1748 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1036
Count of miRNA genes:628
Interacting mature miRNAs:760
Transcripts:ENSMUST00000066582, ENSMUST00000084563, ENSMUST00000098025
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)778649748136901729Mouse
1300528Ssial3_msusceptibility to sialadenitis 3 (mouse)Not determined793391848127392041Mouse
1301478Eae26_msusceptibility to experimental allergic encephalomyelitis 26 (mouse)Not determined798164922132165010Mouse
13524850Asrq7_macoustic startle response 7 (mouse)798394974132394974Mouse
10412104Tons2_mtongue size 2 (mouse)Not determined799837716133837716Mouse
11039524Tbbr3_mTrypanosoma brucei brucei response 3 (mouse)7100750722134750843Mouse
1301447Fembm3_mfemoral bone morphometry 3 (mouse)Not determined7100993261134993342Mouse
1357460Vtbt4_mvertebral trabecular bone trait 4 (mouse)Not determined7101693381135693530Mouse
1301105Cfld4_mcystic fibrosis lung disease 4 (mouse)Not determined7101693381135693530Mouse
1300721Cfbw3_mcystic fibrosis body weight 3 (mouse)Not determined7101693381135693530Mouse
4142312Nilac4_mnicotine induced locomotor activity 4 (mouse)Not determined7102485219136485380Mouse
5491192Mobq1_mmultigenic obesity QTL 1 (mouse)Not determined7105250663139250811Mouse
13524852Asrq7a_macoustic startle response 7a (mouse)7105350008139350008Mouse
14700684Civq1_mcerebral infarct volume QTL 1 (mouse)7109707335143707335Mouse
14700687Civq5_mcerebral infarct volume QTL 5 (mouse)7109707335143707335Mouse
14700688Civq6_mcerebral infarct volume QTL 6 (mouse)7109707335143707335Mouse
11059562Lmr21b_mleishmaniasis resistance 21b (mouse)7110967235144967336Mouse
10402499Lmr21_mleishmaniasis resistance 21 (mouse)Not determined7110967235144967336Mouse
1302032Alcp12_malcohol preference locus 12 (mouse)Not determined7111166122144995196Mouse
1301898Alcp14_malcohol preference locus 14 (mouse)Not determined7111166122144995196Mouse
1300670Sluc19_msusceptibility to lung cancer 19 (mouse)Not determined7111166122144995196Mouse
4142444Femwf5_mfemur work to failure 5 (mouse)Not determined112552248144995196Mouse
1300747Skts2_mskin tumor susceptibility 2 (mouse)Not determined7112922733144995196Mouse
38501072Stsl7_mSalmonella typhimurium susceptibility locus 7 (mouse)7115699235128501724Mouse
1300677Bmd9_mbone mineral density 9 (mouse)Not determined7116634089144995196Mouse
15092059Wogrme1_mweek one growth rate, maternal effect 1 (mouse)7117199227134101729Mouse
11059561Lmr21a_mleishmaniasis resistance 21a (mouse)7117750722127967336Mouse
1357711Adbg1_madult body growth 1 (mouse)Not determined7118693381144398314Mouse
1301773Stheal7_msoft tissue heal 7 (mouse)Not determined7119132573144995196Mouse
1357613Bsbob2_mBSB obesity 2 (mouse)Not determined7122250663128819324Mouse
1301903Tlsm1_mthymic lymphoma susceptible 1 (mouse)Not determined7122250663135170901Mouse
4141945Il4ppq_mIL-4 producing potential QTL (mouse)Not determined7124513662128819324Mouse

Markers in Region
UniSTS:235785  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387127,551,704 - 127,552,003UniSTSGRCm38
MGSCv377134,695,218 - 134,695,517UniSTSGRCm37
Celera7127,396,788 - 127,397,087UniSTS
Cytogenetic Map7F3UniSTS
AW048743  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387127,511,352 - 127,511,478UniSTSGRCm38
MGSCv377134,654,866 - 134,654,992UniSTSGRCm37
Celera7127,356,390 - 127,356,516UniSTS
Cytogenetic Map7F3UniSTS
Whitehead/MRC_RH71296.06UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001304266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC122417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC136146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI549885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI563699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK050824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK081131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK086186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK142089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC085144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG083565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG088793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ770450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU055896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF161846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ206221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN537242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN664718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000066582   ⟹   ENSMUSP00000063817
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7127,112,164 - 127,135,548 (+)Ensembl
GRCm38.p6 Ensembl7127,512,992 - 127,536,376 (+)Ensembl
RefSeq Acc Id: ENSMUST00000098025   ⟹   ENSMUSP00000095635
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7127,111,199 - 127,124,495 (+)Ensembl
GRCm38.p6 Ensembl7127,512,027 - 127,525,323 (+)Ensembl
RefSeq Acc Id: ENSMUST00000185401
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7127,111,155 - 127,126,212 (+)Ensembl
GRCm38.p6 Ensembl7127,511,983 - 127,527,040 (+)Ensembl
RefSeq Acc Id: ENSMUST00000186672   ⟹   ENSMUSP00000140395
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7127,111,637 - 127,138,408 (+)Ensembl
GRCm38.p6 Ensembl7127,512,465 - 127,539,236 (+)Ensembl
RefSeq Acc Id: ENSMUST00000186759
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7127,115,165 - 127,119,141 (+)Ensembl
GRCm38.p6 Ensembl7127,515,993 - 127,519,969 (+)Ensembl
RefSeq Acc Id: ENSMUST00000186954   ⟹   ENSMUSP00000139536
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7127,115,320 - 127,159,941 (+)Ensembl
GRCm38.p6 Ensembl7127,516,148 - 127,560,769 (+)Ensembl
RefSeq Acc Id: ENSMUST00000187040   ⟹   ENSMUSP00000140036
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7127,112,190 - 127,160,391 (+)Ensembl
GRCm38.p6 Ensembl7127,513,018 - 127,561,219 (+)Ensembl
RefSeq Acc Id: ENSMUST00000187164
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7127,112,164 - 127,135,548 (+)Ensembl
GRCm38.p6 Ensembl7127,512,992 - 127,536,376 (+)Ensembl
RefSeq Acc Id: ENSMUST00000187442
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7127,111,284 - 127,114,585 (+)Ensembl
GRCm38.p6 Ensembl7127,512,112 - 127,515,413 (+)Ensembl
RefSeq Acc Id: ENSMUST00000188124   ⟹   ENSMUSP00000140882
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7127,111,155 - 127,128,494 (+)Ensembl
GRCm38.p6 Ensembl7127,511,983 - 127,529,322 (+)Ensembl
RefSeq Acc Id: ENSMUST00000189136   ⟹   ENSMUSP00000141098
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7127,111,174 - 127,122,009 (+)Ensembl
GRCm38.p6 Ensembl7127,512,002 - 127,522,837 (+)Ensembl
RefSeq Acc Id: ENSMUST00000189449
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7127,111,473 - 127,115,168 (+)Ensembl
GRCm38.p6 Ensembl7127,512,301 - 127,515,996 (+)Ensembl
RefSeq Acc Id: ENSMUST00000189812
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7127,132,932 - 127,134,964 (+)Ensembl
GRCm38.p6 Ensembl7127,533,760 - 127,535,792 (+)Ensembl
RefSeq Acc Id: ENSMUST00000190390   ⟹   ENSMUSP00000139399
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7127,115,320 - 127,159,941 (+)Ensembl
GRCm38.p6 Ensembl7127,516,148 - 127,560,769 (+)Ensembl
RefSeq Acc Id: NM_001304266   ⟹   NP_001291195
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397127,111,155 - 127,160,391 (+)NCBI
GRCm387127,511,983 - 127,561,219 (+)NCBI
Celera7127,357,021 - 127,406,188 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001291195   ⟸   NM_001304266
- UniProtKB: A0A087WQ44 (UniProtKB/TrEMBL),   A0A087WNL7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000063817   ⟸   ENSMUST00000066582
RefSeq Acc Id: ENSMUSP00000140395   ⟸   ENSMUST00000186672
RefSeq Acc Id: ENSMUSP00000139536   ⟸   ENSMUST00000186954
RefSeq Acc Id: ENSMUSP00000139399   ⟸   ENSMUST00000190390
RefSeq Acc Id: ENSMUSP00000140882   ⟸   ENSMUST00000188124
RefSeq Acc Id: ENSMUSP00000140036   ⟸   ENSMUST00000187040
RefSeq Acc Id: ENSMUSP00000095635   ⟸   ENSMUST00000098025
RefSeq Acc Id: ENSMUSP00000141098   ⟸   ENSMUST00000189136
Protein Domains
Helicase ATP-binding   Helicase C-terminal   HSA

Promoters
RGD ID:8665685
Promoter ID:EPDNEW_M10873
Type:initiation region
Name:Srcap_1
Description:Mus musculus Snf2-related CREBBP activator protein , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387127,512,030 - 127,512,090EPDNEW
RGD ID:6841454
Promoter ID:MM_KWN:52792
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung
Transcripts:LINCRNA_960,   UC009JVZ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367134,703,796 - 134,705,207 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2444036 AgrOrtholog
Ensembl Genes ENSMUSG00000053877 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000066582.12 UniProtKB/TrEMBL
  ENSMUST00000098025.11 UniProtKB/TrEMBL
  ENSMUST00000186672.7 UniProtKB/TrEMBL
  ENSMUST00000186954.5 UniProtKB/TrEMBL
  ENSMUST00000187040 ENTREZGENE
  ENSMUST00000187040.7 UniProtKB/TrEMBL
  ENSMUST00000188124.7 UniProtKB/TrEMBL
  ENSMUST00000189136.7 UniProtKB/TrEMBL
  ENSMUST00000190390.7 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.10810 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
  SWI2/SNF2 ATPases, N-terminal domain UniProtKB/TrEMBL
InterPro AT_hook_DNA-bd_motif UniProtKB/TrEMBL
  Helicase/SANT-assoc_DNA-bd UniProtKB/TrEMBL
  Helicase_ATP-bd UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  SNF2-like_sf UniProtKB/TrEMBL
  SNF2/RAD54-like_C UniProtKB/TrEMBL
  SNF2_N UniProtKB/TrEMBL
KEGG Report mmu:100043597 UniProtKB/TrEMBL
MGD MGI:2444036 ENTREZGENE
NCBI Gene 100043597 ENTREZGENE
PANTHER HELICASE SRCAP UniProtKB/TrEMBL
  HELICASE SRCAP-RELATED UniProtKB/TrEMBL
Pfam Helicase_C UniProtKB/TrEMBL
  HSA UniProtKB/TrEMBL
  SNF2_N UniProtKB/TrEMBL
PhenoGen Srcap PhenoGen
PRINTS ATHOOK UniProtKB/TrEMBL
PROSITE HELICASE_ATP_BIND_1 UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/TrEMBL
  HSA UniProtKB/TrEMBL
SMART AT_hook UniProtKB/TrEMBL
  DEXDc UniProtKB/TrEMBL
  HELICc UniProtKB/TrEMBL
  HSA UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A087WNL7 ENTREZGENE, UniProtKB/TrEMBL
  A0A087WNX7_MOUSE UniProtKB/TrEMBL
  A0A087WQ44 ENTREZGENE, UniProtKB/TrEMBL
  A0A087WQY5_MOUSE UniProtKB/TrEMBL
  A0A087WS36_MOUSE UniProtKB/TrEMBL
  A0A087WSL6_MOUSE UniProtKB/TrEMBL
  E9Q9V7_MOUSE UniProtKB/TrEMBL
  Q3U4M6_MOUSE UniProtKB/TrEMBL
  Q8BKT0_MOUSE UniProtKB/TrEMBL
  Q8BQA6_MOUSE UniProtKB/TrEMBL
  Q8BUY7_MOUSE UniProtKB/TrEMBL
  Q8BV54_MOUSE UniProtKB/TrEMBL