Or2y1b (olfactory receptor family 2 subfamily Y member 1B) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Or2y1b (olfactory receptor family 2 subfamily Y member 1B) Mus musculus
Analyze
No known orthologs.
Symbol: Or2y1b
Name: olfactory receptor family 2 subfamily Y member 1B
RGD ID: 1623302
MGI Page MGI
Description: Predicted to enable olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and sensory perception of smell. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in olfactory epithelium. Orthologous to human OR2Y1 (olfactory receptor family 2 subfamily Y member 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: GA_x6K02T2QP88-6117098-6116163; L4; L45; MOR256-; MOR256-55; odorant receptor L45; olfactory receptor 10; olfactory receptor 2Y1B; Olfr10; RP23-10M12.7
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391149,208,375 - 49,209,310 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1149,195,568 - 49,210,848 (+)EnsemblGRCm39 Ensembl
GRCm381149,317,548 - 49,318,483 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1149,304,741 - 49,320,021 (+)EnsemblGRCm38mm10GRCm38
MGSCv371149,131,050 - 49,131,985 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361149,160,971 - 49,161,906 (+)NCBIMGSCv36mm8
Celera1153,880,090 - 53,881,025 (+)NCBICelera
Cytogenetic Map11B1.2NCBI
cM Map1129.36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7528109   PMID:8570653   PMID:10087302   PMID:10609087   PMID:12477932   PMID:14611657   PMID:15081110   PMID:15456728   PMID:17715346   PMID:21873635   PMID:22906231   PMID:26446231  
PMID:32295537  


Genomics

Variants

.
Variants in Or2y1b
25 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:78
Count of miRNA genes:73
Interacting mature miRNAs:75
Transcripts:ENSMUST00000074358
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111857861652578716Mouse
12801460Intim2_mintima modifier 2 (mouse)111857861652578716Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111857861652578716Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111857861652578716Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111928257753282715Mouse
14746971Manh70_mmandible shape 70 (mouse)111990589053905890Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse
12910801Pwbwq14_mpost-weaning body weight QTL 14 (mouse)112719805750636094Mouse
12910804Pwbwq16_mpost-weaning body weight QTL 16 (mouse)112719805750636094Mouse
12910806Pwbwq15_mpost-weaning body weight QTL 15 (mouse)112719805750636094Mouse
12910817Pwgrq20_mpost-weaning growth rate QTL 20 (mouse)112719805750636094Mouse
12910818Ogrq5_moverall growth rate QTL 5 (mouse)112719805750636094Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
4142475Ity2a_mimmunity to S. typhimurium 2a (mouse)Not determined113776858060402716Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
10053675Eae44b_mexperimental allergic encephalomyelitis susceptibility 44b (mouse)Not determined113995072854094448Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
1300713Vmbic10_mventral midbrain iron content 10 (mouse)Not determined114277262654081064Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
13452402Hipmt3_mhippocampal morphometry trait 3 (mouse)114797732550277325Mouse

Markers in Region
UniSTS:489570  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381149,317,548 - 49,318,483UniSTSGRCm38
MGSCv371149,131,050 - 49,131,985UniSTSGRCm37
Celera1153,880,090 - 53,881,025UniSTS
Cytogenetic Map11B1.2UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000187570   ⟹   ENSMUSP00000139744
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1149,208,375 - 49,209,316 (+)Ensembl
GRCm38.p6 Ensembl1149,317,548 - 49,318,489 (+)Ensembl
RefSeq Acc Id: ENSMUST00000217290   ⟹   ENSMUSP00000149724
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1149,195,568 - 49,210,848 (+)Ensembl
GRCm38.p6 Ensembl1149,304,741 - 49,320,021 (+)Ensembl
RefSeq Acc Id: NM_206822   ⟹   NP_996558
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391149,208,375 - 49,209,310 (+)NCBI
GRCm381149,317,548 - 49,318,483 (+)ENTREZGENE
MGSCv371149,131,050 - 49,131,985 (+)RGD
Celera1153,880,090 - 53,881,025 (+)RGD
cM Map11 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_996558 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC52395 (Get FASTA)   NCBI Sequence Viewer  
  AAI48304 (Get FASTA)   NCBI Sequence Viewer  
  AAP71773 (Get FASTA)   NCBI Sequence Viewer  
  EDL33758 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000139744
  ENSMUSP00000139744.2
  ENSMUSP00000149724.2
GenBank Protein Q60883 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_996558   ⟸   NM_206822
- UniProtKB: A7E1Z7 (UniProtKB/Swiss-Prot),   Q7TQS9 (UniProtKB/Swiss-Prot),   Q60883 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000149724   ⟸   ENSMUST00000217290
RefSeq Acc Id: ENSMUSP00000139744   ⟸   ENSMUST00000187570

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q60883-F1-model_v2 AlphaFold Q60883 1-311 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:107598 AgrOrtholog
Ensembl Genes ENSMUSG00000100923 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000187570 ENTREZGENE
  ENSMUST00000187570.3 UniProtKB/Swiss-Prot
  ENSMUST00000217290.2 UniProtKB/Swiss-Prot
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot
InterPro GPCR_Rhodpsn UniProtKB/Swiss-Prot
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot
  Olfact_rcpt UniProtKB/Swiss-Prot
KEGG Report mmu:18307 UniProtKB/Swiss-Prot
MGD MGI:107598 ENTREZGENE
NCBI Gene 18307 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/Swiss-Prot
  OLFACTORY RECEPTOR-RELATED UniProtKB/Swiss-Prot
Pfam 7tm_4 UniProtKB/Swiss-Prot
PhenoGen Or2y1b PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/Swiss-Prot
  OLFACTORYR UniProtKB/Swiss-Prot
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/Swiss-Prot
  G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot
UniProt A7E1Z7 ENTREZGENE
  OLF10_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q7TQS9 ENTREZGENE
UniProt Secondary A7E1Z7 UniProtKB/Swiss-Prot
  Q7TQS9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-05-24 Or2y1b  olfactory receptor family 2 subfamily Y member 1B  Olfr10  olfactory receptor 10  Symbol and/or name change 5135510 APPROVED