Rbpj-ps1 (recombination signal binding protein for immunoglobulin kappa J region, pseudogene 1) - Rat Genome Database

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Gene: Rbpj-ps1 (recombination signal binding protein for immunoglobulin kappa J region, pseudogene 1) Mus musculus
Analyze
Symbol: Rbpj-ps1
Name: recombination signal binding protein for immunoglobulin kappa J region, pseudogene 1
RGD ID: 1623287
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: Igkrs; Igkrsbp-ps1; Rbpsu; Rbpsuh-ps1; recombining binding protein suppressor of hairless (Drosophila), pseudogene 1
Related Functional Gene: Rbpj  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39449,350,517 - 49,374,689 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl449,350,522 - 49,351,527 (+)EnsemblGRCm39 Ensembl
GRCm38449,350,517 - 49,374,689 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl449,350,522 - 49,351,527 (+)EnsemblGRCm38mm10GRCm38
MGSCv37449,363,393 - 49,364,221 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36449,371,621 - 49,372,449 (+)NCBIMGSCv36mm8
Celera449,380,154 - 49,380,982 (+)NCBICelera
Cytogenetic Map4B1NCBI
cM Map426.33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:1740450   PMID:14610273  


Genomics

Variants

.
Variants in Rbpj-ps1
806 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:70
Count of miRNA genes:69
Interacting mature miRNAs:70
Transcripts:ENSMUST00000119456
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
4142318Lyr2_mlymphoma resistance 2 (mouse)Not determined1401045763283678Mouse
4142047Mvwf3_mmodifier of von Willebrand factor 3 (mouse)Not determined14010457117072206Mouse
1301203Alcp8_malcohol preference locus 8 (mouse)Not determined41739516051395290Mouse
1301237Alcp7_malcohol preference locus 7 (mouse)Not determined41739516051395290Mouse
4141555Nbwa2_mNZB and NZW autoimmunity 2 (mouse)Not determined41789251551892635Mouse
4141911W6q15_mweight 6 weeks QTL 15 (mouse)Not determined1789261688982216Mouse
39128211Lwq22_mliver weight QTL 22 (mouse)41789261688982216Mouse
1357453Kidq4_mkidney weight QTL 4 (mouse)Not determined41789261688982216Mouse
1302058Hrtfm3_mheart failure modifier 3 (mouse)Not determined42211194456112145Mouse
1300769Pcyts2_mplasmacytoma susceptibility 2 (mouse)Not determined42211194456112145Mouse
1301437Scon1_msucrose consumption 1 (mouse)Not determined42237344856373612Mouse
1302075Bdln6_mbody length 6 (mouse)Not determined42237344856373612Mouse
1301697Sluc18_msusceptibility to lung cancer 18 (mouse)Not determined42237344856373612Mouse
1300574Im2_mimmunoregulatory 2 (mouse)Not determined42807768262077816Mouse
1301586Stheal3_msoft tissue heal 3 (mouse)Not determined42865844262658566Mouse
1357877Synch1_msynechia 1 (mouse)Not determined42870992562710107Mouse
1301990Arvm1_mautoimmune renal vasculitis 1 (mouse)Not determined42933264663332776Mouse
1301792Hdlq10_mHDL QTL 10 (mouse)Not determined43585970769859853Mouse
1300977Mopkd1_mmodifier of polycystic kidney disease progression 1 (mouse)Not determined43655083970550967Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000128993793Mouse
1302116Bbaa1_mB.burgdorferi-associated arthritis 1 (mouse)Not determined43825093072251078Mouse
10412178Habiir2_mhyperoxic acute lung injury imprinted region 2 (mouse)Not determined43945212663283678Mouse
1301786Bpq3_mblood pressure QTL 3 (mouse)Not determined44240224076402381Mouse
27226724Tibw2_mtibia width 2, proximal, 10 week (mouse)443000000108357197Mouse
1301941Mmtg1_mmodifier of mammary tumor growth 1 (mouse)Not determined44565844283099157Mouse
1558948Ath8_matherosclerosis 8 (mouse)Not determined445658442105156995Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138342753Mouse
12879977Bod2_mbone length and organs 2 (mouse)44628353180283678Mouse
10043880Adip23_madiposity 23 (mouse)Not determined44628353180283678Mouse
1558794Agnm1_mautoimmune glomerulonephritis in MRL 1 (mouse)Not determined44633264655755867Mouse
1300966Pabr2_mplasma apolipoprotein B (human) regulator 2 (mouse)Not determined446332646105801860Mouse
10449022Aanq1_maristolochic acid nephrotoxicity QTL 1 (mouse)44660382680603826Mouse
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123127211Mouse
13432179Acq1_mactivity chamber QTL 1 (mouse)44708712850187128Mouse
13432176Actres1_mactivity response to ethanol/saline 1 (mouse)44758712850387128Mouse
11532688Mh_mmodifier of hemostasis (mouse)44830477582304775Mouse
25314308Mlh1fc1_mMLH1 foci count 1 (mouse)44850000076918237Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000119456
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl449,350,522 - 49,351,527 (+)Ensembl
GRCm38.p6 Ensembl449,350,522 - 49,351,527 (+)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000081770 Ensembl
MGD MGI:96523 ENTREZGENE
NCBI Gene 19665 ENTREZGENE
PhenoGen Rbpj-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-10-31 Rbpj-ps1  recombination signal binding protein for immunoglobulin kappa J region, pseudogene 1  Rbpsuh-ps1  recombining binding protein suppressor of hairless (Drosophila), pseudogene 1  Symbol and/or name change 5135510 APPROVED