Reg3d (regenerating islet-derived 3 delta) - Rat Genome Database
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Gene: Reg3d (regenerating islet-derived 3 delta) Mus musculus
Analyze
No known orthologs.
Symbol: Reg3d
Name: regenerating islet-derived 3 delta
RGD ID: 1623258
MGI Page MGI
Description: Orthologous to human REG3A (regenerating family member 3 alpha) and REG3G (regenerating family member 3 gamma); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4,6-trinitrobenzenesulfonic acid; 4,4'-diaminodiphenylmethane.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: I; INGAP; Ingaprp; islet neogenesis associated protein-related protein; MGC130575; Reg III delta
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39678,352,857 - 78,355,848 (-)NCBIGRCm39mm39
GRCm39 Ensembl678,352,857 - 78,355,848 (-)Ensembl
GRCm38678,375,874 - 78,378,865 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl678,375,874 - 78,378,865 (-)EnsemblGRCm38mm10GRCm38
MGSCv37678,325,868 - 78,328,859 (-)NCBIGRCm37mm9NCBIm37
MGSCv36678,305,383 - 78,308,372 (-)NCBImm8
Celera680,399,064 - 80,402,055 (-)NCBICelera
Cytogenetic Map6C3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10564727   PMID:10767532   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:17998566   PMID:18192873  
PMID:21187123   PMID:21677750   PMID:21873635   PMID:26398943   PMID:27626380  


Genomics


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487426034Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080600000Mouse
13208564Bmiq7_mbody mass index QTL 7 (mouse)62500000080000000Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
1300618Pgia19_mproteoglycan induced arthritis 19 (mouse)Not determined64531405987426034Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1301254Skts11_mskin tumor susceptibility 11 (mouse)Not determined65117915085179300Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5437342788379171Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
4141990Etax6_methanol induced ataxia 6 (mouse)Not determined7132262186275719Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
1301571Arrd1_mage-related retinal degeneration 1 (mouse)Not determined67554435692607450Mouse
1300674Nidd3n_mnon-insulin-dependent diabetes mellitus 3 in NSY (mouse)Not determined67554435694225955Mouse
10412195Efw_mepididymal fat weight (mouse)Not determined67554435694225955Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
14697704Stsl4_mSalmonella typhimurium susceptibility locus 4 (mouse)67710000090000000Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67800000097000000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:186
Count of miRNA genes:108
Interacting mature miRNAs:108
Transcripts:ENSMUST00000089667, ENSMUST00000167492
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000089667   ⟹   ENSMUSP00000087096
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl678,375,874 - 78,378,865 (-)Ensembl
RefSeq Acc Id: ENSMUST00000167492   ⟹   ENSMUSP00000132220
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl678,375,874 - 78,378,865 (-)Ensembl
RefSeq Acc Id: ENSMUST00000205240   ⟹   ENSMUSP00000144715
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl678,375,924 - 78,378,513 (-)Ensembl
RefSeq Acc Id: NM_001161741   ⟹   NP_001155213
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39678,352,857 - 78,355,848 (-)NCBI
GRCm38678,375,874 - 78,378,865 (-)ENTREZGENE
MGSCv37678,325,868 - 78,328,859 (-)RGD
Celera680,399,064 - 80,402,055 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_013893   ⟹   NP_038921
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39678,352,857 - 78,355,848 (-)NCBI
GRCm38678,375,874 - 78,378,865 (-)ENTREZGENE
MGSCv37678,325,868 - 78,328,859 (-)RGD
Celera680,399,064 - 80,402,055 (-)RGD
cM Map6 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_038921   ⟸   NM_013893
- Peptide Label: isoform 1 precursor
- UniProtKB: Q9QUS9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001155213   ⟸   NM_001161741
- Peptide Label: isoform 2 precursor
- UniProtKB: G3UWG6 (UniProtKB/TrEMBL),   Q9QUS9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000144715   ⟸   ENSMUST00000205240
RefSeq Acc Id: ENSMUSP00000087096   ⟸   ENSMUST00000089667
RefSeq Acc Id: ENSMUSP00000132220   ⟸   ENSMUST00000167492
Protein Domains
C-type lectin

Promoters
RGD ID:6890062
Promoter ID:EPDNEW_M8482
Type:initiation region
Name:Reg3d_1
Description:Mus musculus regenerating islet-derived 3 delta , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38678,378,944 - 78,379,004EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1353426 AgrOrtholog
Ensembl Genes ENSMUSG00000068341 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000087096 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000132220 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000144715 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000089667 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000167492 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000205240 UniProtKB/TrEMBL
Gene3D-CATH 3.10.100.10 UniProtKB/TrEMBL
InterPro C-type_lectin UniProtKB/TrEMBL
  C-type_lectin-like UniProtKB/TrEMBL
  C-type_lectin_CS UniProtKB/TrEMBL
  C-type_lectin_fold UniProtKB/TrEMBL
KEGG Report mmu:30053 UniProtKB/TrEMBL
MGD MGI:1353426 ENTREZGENE
NCBI Gene 30053 ENTREZGENE
Pfam Lectin_C UniProtKB/TrEMBL
PhenoGen Reg3d PhenoGen
PROSITE C_TYPE_LECTIN_1 UniProtKB/TrEMBL
  C_TYPE_LECTIN_2 UniProtKB/TrEMBL
SMART CLECT UniProtKB/TrEMBL
Superfamily-SCOP C-type_lectin_fold UniProtKB/TrEMBL
UniProt G3UWG6 ENTREZGENE, UniProtKB/TrEMBL
  Q9JMH1_MOUSE UniProtKB/TrEMBL
  Q9QUS9 ENTREZGENE, UniProtKB/TrEMBL
  Q9QYF8_MOUSE UniProtKB/TrEMBL