Rex1bd (required for excision 1-B domain containing) - Rat Genome Database
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Gene: Rex1bd (required for excision 1-B domain containing) Mus musculus
Analyze
Symbol: Rex1bd
Name: required for excision 1-B domain containing
RGD ID: 1623220
MGI Page MGI
Description: Orthologous to human REX1BD (required for excision 1-B domain containing); INTERACTS WITH 1,2-dimethylhydrazine; clobetasol; ethanol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 2810428I15Rik; hypothetical protein LOC66462; RIKEN cDNA 2810428I15 gene; uncharacterized protein C19orf60 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39870,956,945 - 70,959,402 (-)NCBIGRCm39mm39
GRCm38870,504,295 - 70,506,752 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl870,504,292 - 70,506,752 (-)EnsemblGRCm38mm10GRCm38
MGSCv37873,028,195 - 73,030,638 (-)NCBIGRCm37mm9NCBIm37
MGSCv36873,433,285 - 73,435,728 (-)NCBImm8
Celera873,060,707 - 73,063,150 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11125038   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:21267068  


Genomics

Comparative Map Data
Rex1bd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39870,956,945 - 70,959,402 (-)NCBIGRCm39mm39
GRCm38870,504,295 - 70,506,752 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl870,504,292 - 70,506,752 (-)EnsemblGRCm38mm10GRCm38
MGSCv37873,028,195 - 73,030,638 (-)NCBIGRCm37mm9NCBIm37
MGSCv36873,433,285 - 73,435,728 (-)NCBImm8
Celera873,060,707 - 73,063,150 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
REX1BD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1918,588,685 - 18,592,336 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl1918,588,685 - 18,592,337 (+)EnsemblGRCh38hg38GRCh38
GRCh381918,588,798 - 18,592,337 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371918,699,495 - 18,703,147 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361918,560,495 - 18,564,147 (+)NCBINCBI36hg18NCBI36
Celera1918,601,706 - 18,605,350 (+)NCBI
Cytogenetic Map19p13.11NCBI
HuRef1918,262,093 - 18,265,737 (+)NCBIHuRef
CHM1_11918,699,745 - 18,703,379 (+)NCBICHM1_1
Rex1bd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01620,671,935 - 20,674,846 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1620,672,374 - 20,674,846 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01620,527,785 - 20,530,325 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41619,428,804 - 19,431,276 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1619,113,430 - 19,115,902 (+)NCBICelera
Cytogenetic Map16p14NCBI
Rex1bd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555243,003,820 - 3,005,677 (-)NCBIChiLan1.0ChiLan1.0
REX1BD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11919,035,766 - 19,039,415 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1919,035,764 - 19,039,415 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01918,065,875 - 18,069,557 (+)NCBIMhudiblu_PPA_v0panPan3
Rex1bd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365962,702,852 - 2,705,884 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
REX1BD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl259,234,320 - 59,237,219 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1259,234,325 - 59,237,071 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2259,065,693 - 59,068,480 (+)NCBISscrofa10.2Sscrofa10.2susScr3
REX1BD
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1617,056,469 - 17,060,379 (+)NCBI
Rex1bd
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249081,749,875 - 1,752,498 (+)NCBI

Position Markers
RH125985  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38870,507,405 - 70,507,628UniSTSGRCm38
MGSCv37873,031,304 - 73,031,527UniSTSGRCm37
Celera873,063,816 - 73,064,046UniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map8B3.3UniSTS
cM Map833.5UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558870Eae36_mexperimental allergic encephalomyelitis susceptibility 36 (mouse)Not determined81472316071045600Mouse
1357811Orq3_movulation rate QTL 3 (mouse)Not determined83201654471287993Mouse
4141437W10q14_mweight 10 weeks QTL 14 (mouse)Not determined3201654471287993Mouse
4141172W6q9_mweight 6 weeks QTL 9 (mouse)Not determined3201654471287993Mouse
4140966Egq12_mearly growth QTL 12 (mouse)Not determined3201654471287993Mouse
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
1301544Iba3_minduction of brown adipocytes 3 (mouse)Not determined84429488078295025Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84763703081637146Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84763703081637146Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84773713481737254Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84879293982793021Mouse
14746987Manh64_mmandible shape 64 (mouse)85005330684053306Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85005330684053306Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
10766466Char12_mP. chabaudi malaria resistance QTL 12 (mouse)86826982782600347Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1574
Count of miRNA genes:512
Interacting mature miRNAs:623
Transcripts:ENSMUST00000075175, ENSMUST00000128620, ENSMUST00000132107, ENSMUST00000133683, ENSMUST00000135773, ENSMUST00000136913, ENSMUST00000138196, ENSMUST00000143598
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000075175   ⟹   ENSMUSP00000074670
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,504,295 - 70,506,752 (-)Ensembl
RefSeq Acc Id: ENSMUST00000128620
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,505,851 - 70,506,713 (-)Ensembl
RefSeq Acc Id: ENSMUST00000132107
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,505,245 - 70,506,699 (-)Ensembl
RefSeq Acc Id: ENSMUST00000133683
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,504,295 - 70,506,426 (-)Ensembl
RefSeq Acc Id: ENSMUST00000135773
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,504,292 - 70,506,721 (-)Ensembl
RefSeq Acc Id: ENSMUST00000136913   ⟹   ENSMUSP00000120446
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,504,299 - 70,506,737 (-)Ensembl
RefSeq Acc Id: ENSMUST00000138196
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,504,398 - 70,506,108 (-)Ensembl
RefSeq Acc Id: ENSMUST00000143598
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,504,295 - 70,506,112 (-)Ensembl
RefSeq Acc Id: NM_001357209   ⟹   NP_001344138
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39870,956,945 - 70,959,402 (-)NCBI
GRCm38870,504,295 - 70,506,752 (-)NCBI
Sequence:
RefSeq Acc Id: NM_025577   ⟹   NP_079853
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39870,956,945 - 70,959,402 (-)NCBI
GRCm38870,504,295 - 70,506,752 (-)NCBI
MGSCv37873,028,195 - 73,030,638 (-)RGD
Celera873,060,707 - 73,063,150 (-)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_151646
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39870,956,945 - 70,959,076 (-)NCBI
GRCm38870,504,295 - 70,506,426 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_079853   ⟸   NM_025577
- Peptide Label: isoform 1
- UniProtKB: Q9CYZ6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001344138   ⟸   NM_001357209
- Peptide Label: isoform 2
RefSeq Acc Id: ENSMUSP00000074670   ⟸   ENSMUST00000075175
RefSeq Acc Id: ENSMUSP00000120446   ⟸   ENSMUST00000136913

Promoters
RGD ID:8667315
Promoter ID:EPDNEW_M11688
Type:initiation region
Name:Rex1bd_1
Description:Mus musculus required for excision 1-B domain containing , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38870,506,739 - 70,506,799EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1913712 AgrOrtholog
Ensembl Genes ENSMUSG00000058833 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000074670 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000120446 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000075175 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000133683 ENTREZGENE
  ENSMUST00000136913 UniProtKB/TrEMBL
InterPro REX1-B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:66462 UniProtKB/Swiss-Prot
MGD MGI:1913712 ENTREZGENE
NCBI Gene 66462 ENTREZGENE
PANTHER PTHR28309 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DNA_repr_REX1B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rex1bd PhenoGen
UniGene Mm.28242 ENTREZGENE
UniProt D3YZ60_MOUSE UniProtKB/TrEMBL
  Q9CYZ6 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q3TUY7 UniProtKB/Swiss-Prot
  Q9CRH2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-08-22 Rex1bd  required for excision 1-B domain containing  2810428I15Rik  RIKEN cDNA 2810428I15 gene  Symbol and/or name change 5135510 APPROVED