Anapc13 (anaphase promoting complex subunit 13) - Rat Genome Database
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Gene: Anapc13 (anaphase promoting complex subunit 13) Mus musculus
Analyze
Symbol: Anapc13
Name: anaphase promoting complex subunit 13
RGD ID: 1623197
MGI Page MGI
Description: Predicted to be involved in protein K11-linked ubiquitination. Predicted to localize to anaphase-promoting complex. Is expressed in lower urinary tract; ovary; oviduct; and uterus. Orthologous to human ANAPC13 (anaphase promoting complex subunit 13); PARTICIPATES IN cell cycle pathway, mitotic; ubiquitin/proteasome degradation pathway; INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 1810004D07Rik; anaphase-promoting complex subunit 13; APC13; cyclosome subunit 13; cylosome subunit 13; SWM1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm14843   Gm6954  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399102,503,495 - 102,511,443 (+)NCBIGRCm39mm39
GRCm389102,626,296 - 102,634,244 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9102,626,296 - 102,634,425 (+)EnsemblGRCm38mm10GRCm38
MGSCv379102,528,626 - 102,536,574 (+)NCBIGRCm37mm9NCBIm37
MGSCv369102,482,133 - 102,490,054 (+)NCBImm8
Celera9102,167,283 - 102,175,247 (+)NCBICelera
Cytogenetic Map9F1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:17967808  
PMID:18799693   PMID:20360068   PMID:21677750   PMID:21873635   PMID:24194600   PMID:26158450   PMID:26496610   PMID:30157441   PMID:31609468  


Genomics

Comparative Map Data
Anapc13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399102,503,495 - 102,511,443 (+)NCBIGRCm39mm39
GRCm389102,626,296 - 102,634,244 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9102,626,296 - 102,634,425 (+)EnsemblGRCm38mm10GRCm38
MGSCv379102,528,626 - 102,536,574 (+)NCBIGRCm37mm9NCBIm37
MGSCv369102,482,133 - 102,490,054 (+)NCBImm8
Celera9102,167,283 - 102,175,247 (+)NCBICelera
Cytogenetic Map9F1NCBI
ANAPC13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl3134,477,706 - 134,486,716 (-)EnsemblGRCh38hg38GRCh38
GRCh383134,477,704 - 134,486,023 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh373134,196,546 - 134,204,865 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363135,679,240 - 135,687,519 (-)NCBINCBI36hg18NCBI36
Build 343135,679,247 - 135,687,527NCBI
Celera3132,622,829 - 132,631,147 (-)NCBI
Cytogenetic Map3q22.2NCBI
HuRef3131,574,190 - 131,582,508 (-)NCBIHuRef
CHM1_13134,160,900 - 134,169,219 (-)NCBICHM1_1
Anapc13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.08111,107,358 - 111,115,774 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8111,107,358 - 111,115,774 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08110,505,168 - 110,513,584 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48107,591,570 - 107,599,914 (+)NCBIRGSC3.4rn4RGSC3.4
Celera8102,586,991 - 102,595,407 (+)NCBICelera
Cytogenetic Map8q32NCBI
Anapc13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555014,096,026 - 4,103,212 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555014,096,026 - 4,103,212 (+)NCBIChiLan1.0ChiLan1.0
ANAPC13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13138,995,860 - 139,004,190 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3138,995,860 - 139,004,179 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03131,524,227 - 131,532,624 (-)NCBIMhudiblu_PPA_v0panPan3
ANAPC13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2331,241,716 - 31,249,210 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12331,241,715 - 31,249,677 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Anapc13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365297,569,362 - 7,577,537 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANAPC13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1375,599,800 - 75,605,140 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11375,599,797 - 75,605,667 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21383,127,052 - 83,131,952 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ANAPC13
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl1555,895,970 - 55,900,256 (+)Ensembl
ChlSab1.11555,892,385 - 55,901,168 (+)NCBI
Anapc13
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473010,805,200 - 10,811,341 (-)NCBI


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959990000109260000Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
1357610Vtbt8_mvertebral trabecular bone trait 8 (mouse)Not determined968897510102897652Mouse
1301924Bmd10_mbone mineral density 10 (mouse)Not determined968897510102897652Mouse
1301302Pas4_mpulmonary adenoma susceptibility 4 (mouse)Not determined969239845103239920Mouse
1301621Hpic1_mhaloperidol-induced catalepsy 1 (mouse)Not determined969546513103546645Mouse
1301573Etohcta8_methanol conditioned taste aversion 8 (mouse)Not determined972977005106977152Mouse
10054068El8_mepilepsy 8 (mouse)Not determined972977005106977152Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974368177108368325Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975775364114474379Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975775364114474379Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976535936110536130Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978640645112640755Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979397810113397888Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981798268115798392Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982910333116910428Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982910333116910428Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982910333116910428Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984528818118528921Mouse
10412180Msam3_mmuscle, skeletal, activity measure 3 (mouse)Not determined985897510108641186Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986230401120230530Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986239845120289624Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986748483120748483Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989977005118938021Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
11081166Psl5_mpromotion susceptibility QTL 5 (mouse)994981301112872929Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9101060861124595110Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9102000187124595110Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9102000187124595110Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:116
Count of miRNA genes:114
Interacting mature miRNAs:116
Transcripts:ENSMUST00000038673
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000038673   ⟹   ENSMUSP00000039761
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9102,626,663 - 102,634,242 (+)Ensembl
RefSeq Acc Id: ENSMUST00000186693   ⟹   ENSMUSP00000139762
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9102,626,679 - 102,634,242 (+)Ensembl
RefSeq Acc Id: ENSMUST00000188398   ⟹   ENSMUSP00000140325
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9102,626,324 - 102,634,250 (+)Ensembl
RefSeq Acc Id: ENSMUST00000190279   ⟹   ENSMUSP00000140967
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9102,626,296 - 102,634,425 (+)Ensembl
RefSeq Acc Id: ENSMUST00000190354
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9102,628,512 - 102,629,727 (+)Ensembl
RefSeq Acc Id: NM_181394   ⟹   NP_852059
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399102,503,495 - 102,511,443 (+)NCBI
GRCm389102,626,296 - 102,634,244 (+)ENTREZGENE
MGSCv379102,528,626 - 102,536,574 (+)RGD
Celera9102,167,283 - 102,175,247 (+)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006511806   ⟹   XP_006511869
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399102,503,799 - 102,511,443 (+)NCBI
GRCm389102,626,600 - 102,634,242 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006511807   ⟹   XP_006511870
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399102,503,781 - 102,511,443 (+)NCBI
GRCm389102,626,727 - 102,634,244 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036155234   ⟹   XP_036011127
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399102,505,716 - 102,511,443 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_852059   ⟸   NM_181394
- UniProtKB: Q8R034 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006511869   ⟸   XM_006511806
- Peptide Label: isoform X1
- UniProtKB: Q8R034 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006511870   ⟸   XM_006511807
- Peptide Label: isoform X1
- UniProtKB: Q8R034 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000139762   ⟸   ENSMUST00000186693
RefSeq Acc Id: ENSMUSP00000140967   ⟸   ENSMUST00000190279
RefSeq Acc Id: ENSMUSP00000140325   ⟸   ENSMUST00000188398
RefSeq Acc Id: ENSMUSP00000039761   ⟸   ENSMUST00000038673
RefSeq Acc Id: XP_036011127   ⟸   XM_036155234
- Peptide Label: isoform X1

Promoters
RGD ID:6844157
Promoter ID:MM_KWN:58558
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000016523,   NM_001081122,   NM_181394
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369102,527,926 - 102,529,042 (+)MPROMDB
RGD ID:8670612
Promoter ID:EPDNEW_M13337
Type:multiple initiation site
Name:Anapc13_1
Description:Mus musculus anaphase promoting complex subunit 13 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389102,626,303 - 102,626,363EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1916260 AgrOrtholog
Ensembl Genes ENSMUSG00000035048 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000039761 UniProtKB/Swiss-Prot
  ENSMUSP00000139762 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000140325 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000140967 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000038673 UniProtKB/Swiss-Prot
  ENSMUST00000186693 UniProtKB/Swiss-Prot
  ENSMUST00000188398 UniProtKB/Swiss-Prot
  ENSMUST00000190279 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro Apc13p UniProtKB/Swiss-Prot
KEGG Report mmu:69010 UniProtKB/Swiss-Prot
MGD MGI:1916260 ENTREZGENE
NCBI Gene 69010 ENTREZGENE
PANTHER PTHR28672 UniProtKB/Swiss-Prot
Pfam Apc13p UniProtKB/Swiss-Prot
PhenoGen Anapc13 PhenoGen
UniGene Mm.2000 ENTREZGENE
UniProt APC13_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE