Zfp493 (zinc finger protein 493) - Rat Genome Database

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Gene: Zfp493 (zinc finger protein 493) Mus musculus
Analyze
No known orthologs.
Symbol: Zfp493
Name: zinc finger protein 493
RGD ID: 1623167
MGI Page MGI
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2900054J07Rik; regulator of sex-limitation candidate 12; Rslcan12
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391367,927,812 - 67,937,201 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1367,927,812 - 67,940,631 (+)EnsemblGRCm39 Ensembl
GRCm381367,779,693 - 67,789,082 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1367,779,693 - 67,792,512 (+)EnsemblGRCm38mm10GRCm38
MGSCv371367,880,630 - 67,890,019 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361368,278,806 - 68,291,623 (+)NCBIMGSCv36mm8
MGSCv361365,269,381 - 65,282,323 (+)NCBIMGSCv36mm8
Celera1369,504,509 - 69,513,890 (-)NCBICelera
Cytogenetic Map13B3NCBI
cM Map1334.77NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA)

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14563677   PMID:14610273   PMID:16141072   PMID:16141073   PMID:18799693   PMID:21873635   PMID:29997285  


Genomics

Variants

.
Variants in Zfp493
406 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:601
Count of miRNA genes:415
Interacting mature miRNAs:461
Transcripts:ENSMUST00000164936, ENSMUST00000180507, ENSMUST00000181319
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884393Humsd7_mhumerus midshaft diameter 7, 16 week (mouse)13395000076048119Mouse
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
4142009Pregq3_mpregnancy QTL 3 (mouse)Not determined132061551272385189Mouse
1301299Sluc23_msusceptibility to lung cancer 23 (mouse)Not determined133492194368922081Mouse
10412235Scgq5_mspontaneous crescentic glomerulonephritis QTL 5 (mouse)Not determined133606090896239162Mouse
1357587Pfat3_mpredicted fat percentage 3 (mouse)Not determined133610153070101640Mouse
1301734Acsns2_mAngiostrongylus costaricensis nematode susceptibility 2 (mouse)Not determined133610153070101640Mouse
1300561Heal7_mwound healing/regeneration 7 (mouse)Not determined133614482070144904Mouse
1300862Cfbw5_mcystic fibrosis body weight 5 (mouse)Not determined133872035872720517Mouse
1300985Bmd13_mbone mineral density 13 (mouse)Not determined133962924973629397Mouse
1302157Bwem2_mbody weight day 30 males 2 (mouse)Not determined133962924973629397Mouse
1301801Cpfd5_mcerebellum pattern fissures (mouse)Not determined133962924973629397Mouse
15039353Nmrs35_mNAFLD-associated magnetic resonance shift 35 (mouse)134058825374588253Mouse
1300668Pas10_mpulmonary adenoma susceptibility 10 (mouse)Not determined134148904275489158Mouse
4142331Bxs6_mBXSB/MpJ autoimmune nephritis 6 (mouse)Not determined4521044283744746Mouse
10412109Bxs7_mBXSB/MpJ autoimmune nephritis 7 (mouse)Not determined134521044283744746Mouse
26884396Humsd4_mhumerus midshaft diameter 4, 10 week (mouse)134785347673148119Mouse
4142372Moo2_mmodifier of Odc2 (mouse)Not determinedX5031841184318559Mouse
1301666Eae13_msusceptibility to experimental allergic encephalomyelitis 13 (mouse)Not determined135031841184318559Mouse
1300573Elsgp2_melevated serum gp70 2 (mouse)Not determined135061682884617027Mouse
14746975Manh74_mmandible shape 74 (mouse)135247726986477269Mouse
1302073Pgct1_mprimordial germ cell tumor locus 1 (mouse)Not determined135382078387820897Mouse
1357563Bmch6_mbone mechanical trait 6 (mouse)Not determined135538498089385140Mouse
4142314Tailaq3_mtail length adjusted QTL 3 (mouse)Not determined55720354112431103Mouse
4140959W10q17_mweight 10 weeks QTL 17 (mouse)Not determined55720354112431103Mouse
4141992W6q16_mweight 6 weeks QTL 16 (mouse)Not determined55720354112431103Mouse
4142241Tailq3_mtail length QTL 3 (mouse)Not determined55720354112431103Mouse
1558850Sgp3_mserum gp70 production 3 (mouse)Not determined135647045676971314Mouse
10402414Sgp5_mserum gp70 production 5 (mouse)Not determined1356470456105422186Mouse
1357553Cia28_mcollagen induced arthritis 28 (mouse)Not determined135662924996239162Mouse
10412163Wra1_mwheel running activity 1 (mouse)Not determined135913260093132738Mouse
1300941Skl6_mskeletal size (tail length) 6 (mouse)Not determined136425082198250945Mouse
1301949Skull20_mskull morphology 20 (mouse)Not determined136425082198250945Mouse
1301445Listr2_mlisteriosis resistance 2 (mouse)Not determined1366744601100744746Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000164936   ⟹   ENSMUSP00000132282
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1367,927,824 - 67,937,197 (+)Ensembl
GRCm38.p6 Ensembl1367,779,705 - 67,789,078 (+)Ensembl
RefSeq Acc Id: ENSMUST00000180507
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1367,934,076 - 67,938,038 (+)Ensembl
GRCm38.p6 Ensembl1367,785,957 - 67,789,919 (+)Ensembl
RefSeq Acc Id: ENSMUST00000181319   ⟹   ENSMUSP00000137936
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1367,927,873 - 67,940,631 (+)Ensembl
GRCm38.p6 Ensembl1367,779,754 - 67,792,512 (+)Ensembl
RefSeq Acc Id: ENSMUST00000220570   ⟹   ENSMUSP00000152847
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1367,927,812 - 67,934,399 (+)Ensembl
GRCm38.p6 Ensembl1367,779,693 - 67,786,280 (+)Ensembl
RefSeq Acc Id: ENSMUST00000223540
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1367,927,835 - 67,934,373 (+)Ensembl
GRCm38.p6 Ensembl1367,779,716 - 67,786,254 (+)Ensembl
RefSeq Acc Id: NM_028402   ⟹   NP_082678
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391367,927,812 - 67,937,201 (+)NCBI
GRCm381367,779,693 - 67,789,082 (+)ENTREZGENE
MGSCv371367,880,630 - 67,890,019 (+)RGD
Celera1369,504,509 - 69,513,890 (-)RGD
cM Map13 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_082678 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein DAA01863 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000132282
  ENSMUSP00000132282.2
  ENSMUSP00000137936.2
  ENSMUSP00000152847.2
RefSeq Acc Id: NP_082678   ⟸   NM_028402
- UniProtKB: E9Q1L8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000132282   ⟸   ENSMUST00000164936
RefSeq Acc Id: ENSMUSP00000137936   ⟸   ENSMUST00000181319
RefSeq Acc Id: ENSMUSP00000152847   ⟸   ENSMUST00000220570
Protein Domains
C2H2-type   KRAB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9Q1L8-F1-model_v2 AlphaFold E9Q1L8 1-384 view protein structure

Promoters
RGD ID:8680738
Promoter ID:EPDNEW_M18399
Type:initiation region
Name:Zfp493_1
Description:Mus musculus zinc finger protein 493 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381367,779,723 - 67,779,783EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1920208 AgrOrtholog
Ensembl Genes ENSMUSG00000090659 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000164936 ENTREZGENE
  ENSMUST00000164936.10 UniProtKB/TrEMBL
  ENSMUST00000181319.2 UniProtKB/TrEMBL
  ENSMUST00000220570.2 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB_dom_sf UniProtKB/TrEMBL
  Krueppel-associated_box UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
KEGG Report mmu:72958 UniProtKB/TrEMBL
MGD MGI:1920208 ENTREZGENE
NCBI Gene 72958 ENTREZGENE
PANTHER KRAB DOMAIN C2H2 ZINC FINGER UniProtKB/TrEMBL
  KRAB DOMAIN-CONTAINING PROTEIN ZNF747-RELATED UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 383-RELATED UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 485 UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
  zf-H2C2_2 UniProtKB/TrEMBL
PhenoGen Zfp493 PhenoGen
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP Krueppel-associated_box UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A1Y7VP64_MOUSE UniProtKB/TrEMBL
  E9Q1L8 ENTREZGENE, UniProtKB/TrEMBL
  M0QWP5_MOUSE UniProtKB/TrEMBL
  Q7M6W9_MOUSE UniProtKB/TrEMBL