Tex37 (testis expressed 37) - Rat Genome Database
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Gene: Tex37 (testis expressed 37) Mus musculus
Analyze
Symbol: Tex37
Name: testis expressed 37
RGD ID: 1623159
MGI Page MGI
Description: Predicted to localize to cytoplasm. Orthologous to human TEX37 (testis expressed 37); INTERACTS WITH sodium fluoride; benzo[a]pyrene (ortholog); bisphenol A (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 1700011F03Rik; MGC58753; testis-expressed sequence 37 protein; testis-specific conserved protein of 21 kDa; Tsc21
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39670,890,073 - 70,928,078 (-)NCBIGRCm39mm39
GRCm38670,913,089 - 70,951,095 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl670,913,087 - 70,918,927 (-)EnsemblGRCm38mm10GRCm38
MGSCv37670,863,083 - 70,868,916 (-)NCBIGRCm37mm9NCBIm37
MGSCv36670,842,666 - 70,848,501 (-)NCBImm8
Celera672,991,439 - 72,997,340 (-)NCBICelera
Cytogenetic Map6C1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,ISO)
cytosol  (ISO)
nucleus  (IEA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
hypoactivity  (IEA)
References

Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11125038   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073   PMID:17091336   PMID:21677750  
PMID:21873635   PMID:26839965   PMID:27626380   PMID:29563520  


Genomics

Comparative Map Data
Tex37
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39670,890,073 - 70,928,078 (-)NCBIGRCm39mm39
GRCm38670,913,089 - 70,951,095 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl670,913,087 - 70,918,927 (-)EnsemblGRCm38mm10GRCm38
MGSCv37670,863,083 - 70,868,916 (-)NCBIGRCm37mm9NCBIm37
MGSCv36670,842,666 - 70,848,501 (-)NCBImm8
Celera672,991,439 - 72,997,340 (-)NCBICelera
Cytogenetic Map6C1NCBI
TEX37
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl288,524,649 - 88,529,585 (+)EnsemblGRCh38hg38GRCh38
GRCh38288,524,619 - 88,529,585 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37288,824,167 - 88,829,103 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh37288,824,115 - 88,829,196 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36288,605,284 - 88,610,217 (+)NCBINCBI36hg18NCBI36
Celera287,957,216 - 87,962,150 (-)NCBI
Cytogenetic Map2p11.2NCBI
HuRef287,745,992 - 87,750,926 (+)NCBIHuRef
CHM1_1288,753,726 - 88,758,660 (+)NCBICHM1_1
Tex37
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24102,885,695 - 102,892,934 (-)NCBI
Rnor_6.0 Ensembl498,728,109 - 98,735,346 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0498,728,109 - 98,735,346 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04163,507,328 - 163,514,565 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44104,097,039 - 104,104,276 (-)NCBIRGSC3.4rn4RGSC3.4
Celera492,061,745 - 92,068,982 (-)NCBICelera
Cytogenetic Map4q31NCBI
Tex37
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955424295,268 - 304,328 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955424296,514 - 305,141 (-)NCBIChiLan1.0ChiLan1.0
TEX37
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A89,565,279 - 89,570,221 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A89,565,279 - 89,570,221 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A87,656,199 - 87,661,913 (+)NCBIMhudiblu_PPA_v0panPan3
TEX37
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1737,970,292 - 37,975,212 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11737,970,295 - 37,974,841 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Tex37
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936712470,472 - 473,320 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TEX37
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl357,523,905 - 57,529,768 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1357,524,640 - 57,528,508 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2360,132,822 - 60,138,093 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TEX37
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11418,235,550 - 18,240,912 (-)NCBI
ChlSab1.1 Ensembl1418,235,667 - 18,239,527 (-)Ensembl
Tex37
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474915,968,820 - 15,973,067 (-)NCBI


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487426034Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080600000Mouse
1357442Dbts1_mdiabetes 1 (mouse)Not determined61823414873387692Mouse
10412213Sxbq2_mSGC/Knj cross B6 QTL 2 (mouse)Not determined61991268671322775Mouse
13208564Bmiq7_mbody mass index QTL 7 (mouse)62500000080000000Mouse
4141782Mrdq5_mmodifier of retinal degeneration QTL 5 (mouse)Not determined3285065078238974Mouse
14746995Manh60_mmandible shape 60 (mouse)63722567771225677Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
1301326Trbv4c2_mT cell receptor beta variable 4 (mouse)Not determined64089129671379171Mouse
12880424V25Dq4_mvitamin D inactive form serum level QTL 4 (mouse)64160000075600000Mouse
1301266Lmr4_mleishmaniasis resistance 4 (mouse)Not determined64211637376116515Mouse
11040600Lmr4c_mleishmaniasis resistance 4c (mouse)64211637376116515Mouse
11040601Lmr4a_mleishmaniasis resistance 4a (mouse)64211637376116515Mouse
11533915Mts4_mmammary tumor susceptibility 4 (mouse)64211637376116515Mouse
12910785Pwgrq16_mpost-weaning growth rate QTL 16 (mouse)64382681377811523Mouse
12910798Pwgrq5_mpre-weaning growth rate QTL 5 (mouse)64382681377811523Mouse
12910802Pwbwq12_mpost-weaning body weight QTL 12 (mouse)64382681377811523Mouse
12910807Pwbwq11_mpost-weaning body weight QTL 11 (mouse)64382681377811523Mouse
12910809Pwbwq10_mpost-weaning body weight QTL 10 (mouse)64382681377811523Mouse
12910820Ogrq3_moverall growth rate QTL 3 (mouse)64382681377811523Mouse
10043885Cia6c_mcollagen induced arthritis QTL 6c (mouse)Not determined64446587171119467Mouse
1300618Pgia19_mproteoglycan induced arthritis 19 (mouse)Not determined64531405987426034Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
4140983Srilp_msleep response to influenza, light phase (mouse)Not determined4872655675447710Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1301254Skts11_mskin tumor susceptibility 11 (mouse)Not determined65117915085179300Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5437342788379171Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:98
Count of miRNA genes:88
Interacting mature miRNAs:96
Transcripts:ENSMUST00000063456
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000063456   ⟹   ENSMUSP00000066786
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl670,913,087 - 70,918,927 (-)Ensembl
RefSeq Acc Id: NM_001355766   ⟹   NP_001342695
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39670,890,073 - 70,895,906 (-)NCBI
GRCm38670,913,089 - 70,918,922 (-)NCBI
Sequence:
RefSeq Acc Id: NM_028825   ⟹   NP_083101
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39670,890,073 - 70,895,906 (-)NCBI
GRCm38670,913,089 - 70,918,922 (-)NCBI
MGSCv37670,863,083 - 70,868,916 (-)RGD
Celera672,991,439 - 72,997,340 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030255636   ⟹   XP_030111496
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39670,890,151 - 70,925,363 (-)NCBI
GRCm38670,913,167 - 70,948,379 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030255637   ⟹   XP_030111497
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39670,890,151 - 70,928,078 (-)NCBI
GRCm38670,913,167 - 70,951,095 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_083101   ⟸   NM_028825
- Peptide Label: isoform 1
- UniProtKB: Q9DAG4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001342695   ⟸   NM_001355766
- Peptide Label: isoform 2
RefSeq Acc Id: XP_030111497   ⟸   XM_030255637
- Peptide Label: isoform X2
RefSeq Acc Id: XP_030111496   ⟸   XM_030255636
- Peptide Label: isoform X1
RefSeq Acc Id: ENSMUSP00000066786   ⟸   ENSMUST00000063456

Promoters
RGD ID:6889944
Promoter ID:EPDNEW_M8423
Type:multiple initiation site
Name:Tex37_1
Description:Mus musculus testis expressed 37 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38670,918,922 - 70,918,982EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1921471 AgrOrtholog
Ensembl Genes ENSMUSG00000051896 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000066786 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000063456 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro TEX37 UniProtKB/Swiss-Prot
KEGG Report mmu:74221 UniProtKB/Swiss-Prot
MGD MGI:1921471 ENTREZGENE
NCBI Gene 74221 ENTREZGENE
PANTHER PTHR36882 UniProtKB/Swiss-Prot
Pfam TSC21 UniProtKB/Swiss-Prot
PhenoGen Tex37 PhenoGen
UniProt Q9DAG4 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q810N1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-11-27 Tex37  testis expressed 37  1700011F03Rik  RIKEN cDNA 1700011F03 gene  Symbol and/or name change 5135510 APPROVED