1700016K19Rik (RIKEN cDNA 1700016K19 gene) - Rat Genome Database
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Gene: 1700016K19Rik (RIKEN cDNA 1700016K19 gene) Mus musculus
Analyze
Symbol: 1700016K19Rik
Name: RIKEN cDNA 1700016K19 gene
RGD ID: 1623156
MGI Page MGI
Description: Orthologous to human C17orf97 (chromosome 17 open reading frame 97); INTERACTS WITH 17alpha-ethynylestradiol (ortholog); 6-propyl-2-thiouracil (ortholog); bisphenol A (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: hypothetical protein LOC74230; Liat1; RP23-96I9.2; uncharacterized protein C17orf97 homolog
RGD Orthologs
Human
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391175,890,738 - 75,894,395 (+)NCBIGRCm39mm39
GRCm39 Ensembl1175,890,738 - 75,894,395 (+)Ensembl
GRCm381175,999,912 - 76,003,569 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1175,999,912 - 76,003,569 (+)EnsemblGRCm38mm10GRCm38
MGSCv371175,813,414 - 75,817,071 (+)NCBIGRCm37mm9NCBIm37
MGSCv361175,816,168 - 75,819,764 (+)NCBImm8
Celera1183,509,005 - 83,512,662 (+)NCBICelera
Cytogenetic Map11B5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function
protein binding  (IPI,ISO)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073   PMID:21267068   PMID:21873635   PMID:25369936  


Genomics

Comparative Map Data
1700016K19Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391175,890,738 - 75,894,395 (+)NCBIGRCm39mm39
GRCm39 Ensembl1175,890,738 - 75,894,395 (+)Ensembl
GRCm381175,999,912 - 76,003,569 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1175,999,912 - 76,003,569 (+)EnsemblGRCm38mm10GRCm38
MGSCv371175,813,414 - 75,817,071 (+)NCBIGRCm37mm9NCBIm37
MGSCv361175,816,168 - 75,819,764 (+)NCBImm8
Celera1183,509,005 - 83,512,662 (+)NCBICelera
Cytogenetic Map11B5NCBI
C17orf97
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl17410,325 - 431,062 (+)EnsemblGRCh38hg38GRCh38
GRCh3817410,325 - 414,666 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3717260,116 - 264,457 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3617260,434 - 264,713 (+)NCBINCBI36hg18NCBI36
Celera17361,212 - 365,198 (+)NCBI
Cytogenetic Map17p13.3NCBI
HuRef17271,792 - 276,131 (+)NCBIHuRef
CHM1_117269,061 - 273,400 (+)NCBICHM1_1
RGD1565611
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21060,872,529 - 60,876,191 (+)NCBI
Rnor_6.0 Ensembl1064,174,931 - 64,178,591 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01064,174,929 - 64,178,612 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01063,834,284 - 63,837,955 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41063,363,232 - 63,366,892 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1059,888,506 - 59,892,166 (+)NCBICelera
Cytogenetic Map10q24NCBI
LOC102025004
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554812,079,002 - 2,083,141 (+)NCBIChiLan1.0ChiLan1.0
C9H17orf97
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1945,246,971 - 45,250,052 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CUNH17orf97
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365387,250,120 - 7,253,604 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C12H17orf97
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11247,327,086 - 47,330,139 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21249,503,175 - 49,506,237 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH17orf97
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.116244,921 - 250,073 (+)NCBI
ChlSab1.1 Ensembl16245,581 - 252,025 (+)Ensembl
CUNH17orf97
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247863,814,511 - 3,822,100 (-)NCBI


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114236579176365904Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114236579176365904Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114473921176963931Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
4141000Nidd3_mnon-insulin-dependent diabetes mellitus 3 (mouse)Not determined4515120179151308Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115423592683842826Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15861720487804412Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5882844085175703Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116179599488808902Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116226517996265327Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116342858181939647Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116342858194173092Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116493951098939647Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116493951098939647Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116493951098939647Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166842594100842826Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166842594100842826Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66842594100842826Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166842594100842826Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166842594100842826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166842594100842826Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116718736579923086Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168300000102000000Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170800372104800540Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170800372104800540Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170800372104800540Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170800372104800540Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172128823106128908Mouse
1301078Alcp2_malcohol preference locus 2 (mouse)Not determined117231897084840636Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172835299106835463Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172927789106927907Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172927789106927907Mouse
12903994Opfaq3_mopen field activity QTL 3 (mouse)117384671582178599Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:148
Count of miRNA genes:143
Interacting mature miRNAs:144
Transcripts:ENSMUST00000066408
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000066408   ⟹   ENSMUSP00000063358
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1175,999,912 - 76,003,569 (+)Ensembl
RefSeq Acc Id: NM_198637   ⟹   NP_941039
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391175,890,738 - 75,894,395 (+)NCBI
GRCm381175,999,912 - 76,003,569 (+)ENTREZGENE
MGSCv371175,813,414 - 75,817,071 (+)RGD
Celera1183,509,005 - 83,512,662 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006534355   ⟹   XP_006534418
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391175,890,748 - 75,894,395 (+)NCBI
GRCm381175,999,922 - 76,003,569 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_941039 (Get FASTA)   NCBI Sequence Viewer  
  XP_006534418 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH49758 (Get FASTA)   NCBI Sequence Viewer  
  BAE21367 (Get FASTA)   NCBI Sequence Viewer  
  EDL12845 (Get FASTA)   NCBI Sequence Viewer  
  Q810M6 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_941039   ⟸   NM_198637
- UniProtKB: Q810M6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006534418   ⟸   XM_006534355
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000063358   ⟸   ENSMUST00000066408

Promoters
RGD ID:8675578
Promoter ID:EPDNEW_M15820
Type:initiation region
Name:1700016K19Rik_1
Description:Mus musculus RIKEN cDNA 1700016K19 gene , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381175,999,988 - 76,000,048EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1921480 AgrOrtholog
Ensembl Genes ENSMUSG00000053783 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000063358 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000066408 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro LIAT1 UniProtKB/Swiss-Prot
KEGG Report mmu:74230 UniProtKB/Swiss-Prot
MGD MGI:1921480 ENTREZGENE
NCBI Gene 74230 ENTREZGENE
PANTHER PTHR36474 UniProtKB/Swiss-Prot
PhenoGen 1700016K19Rik PhenoGen
UniProt LIAT1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE