1700086L19Rik (RIKEN cDNA 1700086L19 gene)

Gene: 1700086L19Rik (RIKEN cDNA 1700086L19 gene) Mus musculus

Analyze

Symbol:

1700086L19Rik

Name:

RIKEN cDNA 1700086L19 gene

RGD ID:

1623146

MGI Page

MGI

Description:

Is expressed in several structures, including alimentary system; cardiovascular system; genitourinary system; nervous system; and sensory organ. Orthologous to human SERTAD4BP (SERTA domain containing 4B, pseudogene).

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Previously known as:

1700006L05Rik; AU016007

RGD Orthologs

Human

Alliance Genes

More Info

more info ...

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	74,331,050 - 74,342,724 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	74,331,022 - 74,343,168 (+)	Ensembl		GRCm39 Ensembl
GRCm39 Ensembl	12	74,331,016 - 74,342,701 (+)	Ensembl		GRCm39 Ensembl
GRCm38	12	74,284,276 - 74,295,950 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	74,284,242 - 74,295,945 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	75,385,263 - 75,396,937 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	75,202,779 - 75,214,788 (+)	NCBI		MGSCv36	mm8
Celera	12	75,397,424 - 75,409,108 (+)	NCBI		Celera
Cytogenetic Map	12	C3	NCBI
cM Map	12	32.45	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

aflatoxin B1 (ISO)

benzo[a]pyrene (ISO)

bisphenol A (ISO)

bisphenol F (ISO)

fulvestrant (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Cellular Component

cellular_component (ND)

Molecular Function

molecular_function (ND)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

hyperactivity (IEA)

References

Additional References at PubMed

PMID:8889548	PMID:10349636	PMID:10725249	PMID:10922068	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:14681479	PMID:16141072	PMID:16141073	PMID:18554416
PMID:21677750	PMID:24194600	PMID:24316575

Genomics

Comparative Map Data

1700086L19Rik
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	74,331,050 - 74,342,724 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	74,331,022 - 74,343,168 (+)	Ensembl		GRCm39 Ensembl
GRCm39 Ensembl	12	74,331,016 - 74,342,701 (+)	Ensembl		GRCm39 Ensembl
GRCm38	12	74,284,276 - 74,295,950 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	74,284,242 - 74,295,945 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	75,385,263 - 75,396,937 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	75,202,779 - 75,214,788 (+)	NCBI		MGSCv36	mm8
Celera	12	75,397,424 - 75,409,108 (+)	NCBI		Celera
Cytogenetic Map	12	C3	NCBI
cM Map	12	32.45	NCBI

SERTAD4BP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	62,117,357 - 62,134,186 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	62,117,346 - 62,128,397 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	62,584,075 - 62,600,904 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	61,664,500 - 61,670,659 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	14	42,634,535 - 42,645,592 (+)	NCBI		Celera
Cytogenetic Map	14	q23.2	NCBI
HuRef	14	42,747,789 - 42,764,618 (+)	NCBI		HuRef
CHM1_1	14	62,523,488 - 62,540,321 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	56,324,579 - 56,341,409 (+)	NCBI		T2T-CHM13v2.0

Variants

Variants in 1700086L19Rik
380 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	46
Count of miRNA genes:	46
Interacting mature miRNAs:	46
Transcripts:	ENSMUST00000095617
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4142234	Tmc1m3_m	Tmc1 modifier 3 (mouse)			Not determined		12	5418440	77031203	Mouse
27226753	Femd7_m	femur midshaft diameter 7, 10 week (mouse)					12	9550000	84146774	Mouse
13207568	Tcq14_m	total cholesterol QTL 14 (mouse)					12	11660001	97176774	Mouse
1558978	Cplaq10_m	circadian period of locomotor activity 10 (mouse)			Not determined		12	15341026	79040364	Mouse
1301574	Lmblgq5_m	limb length QTL 5 (mouse)			Not determined		12	17596447	80956883	Mouse
4142002	Tbqt3_m	tibia bone quality traits 3 (mouse)			Not determined		12	35285496	109936243	Mouse
1357479	Splwt1_m	spleen weight 1 (mouse)			Not determined		12	41693175	90887526	Mouse
1357757	Lnopy2_m	lens opacity 2 (mouse)			Not determined		12	52846626	86846796	Mouse
1357749	Vtbt13_m	vertebral trabecular bone trait 13 (mouse)			Not determined		12	53132002	87132145	Mouse
12832727	Ahrq1_m	airway hyperresponsiveness QTL 1 (mouse)					12	54695910	82665939	Mouse
13504832	Bacszq2_m	baculum size QTL 2 (mouse)					12	56945798	75345787	Mouse
27226728	Tibl20_m	tibia length 20, 16 week (mouse)					12	59146786	93866774	Mouse
27226776	Tibl6_m	tibia length 6, 5 week (mouse)					12	60646786	92666774	Mouse
10043948	Pbft6_m	percent body fat 6 (mouse)			Not determined		12	61205427	95205427	Mouse
1301476	Pbwg12_m	postnatal body weight growth 12 (mouse)			Not determined		12	62040164	96040364	Mouse
27226797	Scvln19_m	sacral vertebrae length 2, 16 week (mouse)					12	62146786	99466259	Mouse
10043895	Bw20_m	body weight QTL 20 (mouse)			Not determined		12	62308252	96308252	Mouse
1301046	Par3_m	pulmonary adenoma resistance 3 (mouse)			Not determined		12	63956708	97956883	Mouse
1301337	Cdcs8_m	cytokine deficiency colitis susceptibility 8 (mouse)			Not determined		12	64689083	98689229	Mouse
1300633	Cdcs7_m	cytokine deficiency colitis susceptibility 7 (mouse)			Not determined		12	64689083	98689229	Mouse
14746976	Manh73_m	mandible shape 73 (mouse)					12	65857131	99857131	Mouse
27226771	Tibl14_m	tibia length 14, 10 week (mouse)					12	68346774	98766259	Mouse
27226793	Feml10_m	femur length 10, 5 week (mouse)					12	68346774	113363620	Mouse
4141738	Tgq23_m	triglyceride QTL 23 (mouse)			Not determined			72112877	106112877	Mouse
1301926	Adip6_m	adiposity 6 (mouse)			Not determined		12	73887422	107887526	Mouse
1301689	Skull18_m	skull morphology 18 (mouse)			Not determined		12	73887422	107887526	Mouse

Markers in Region

AU016007

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	12	74,295,751 - 74,295,836	UniSTS	GRCm38
MGSCv37	12	75,396,738 - 75,396,823	UniSTS	GRCm37
Celera	12	75,408,909 - 75,408,994	UniSTS
Cytogenetic Map	12	C3	UniSTS
Whitehead/MRC_RH	12	685.26	UniSTS

1700086L19Rik

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	12	C3	UniSTS
cM Map	12		UniSTS

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_030733	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_030734	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_030735	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC158365	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK005679	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK007020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BG083361	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BQ175117	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000095617

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	74,331,016 - 74,342,701 (+)	Ensembl
GRCm38.p6 Ensembl	12	74,284,242 - 74,295,927 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000185822

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	74,331,055 - 74,342,793 (+)	Ensembl
GRCm38.p6 Ensembl	12	74,284,289 - 74,295,945 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000186463

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	74,331,022 - 74,343,168 (+)	Ensembl
GRCm38.p6 Ensembl	12	74,284,281 - 74,295,931 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000241154

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	74,331,055 - 74,342,724 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000242913

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	74,331,055 - 74,342,721 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000243121

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	74,331,055 - 74,342,717 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000244064

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	74,331,077 - 74,342,726 (+)	Ensembl

RefSeq Acc Id:

NR_030733

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	12	74,331,050 - 74,342,724 (+)	NCBI
GRCm38	12	74,284,276 - 74,295,950 (+)	ENTREZGENE
MGSCv37	12	75,385,263 - 75,396,937 (+)	RGD
Celera	12	75,397,424 - 75,409,108 (+)	RGD
cM Map	12		ENTREZGENE

Sequence:

show sequence

GTTCTGAGCCGGAGCGAGAGGCGCTTCAGAGAAGGAGGGACCGACCTGCAGGAGCCGGCCGCCC
CGCCGAGCTGCAGTCGCTGCCGCCGCCGCTGTCGCTGTCGCTGTCAGAACCCGTCCGAAGAGTG
ACACCTTCGCGAAAAAACAGGAGCTGTGAAACATTTGCACACGCAGTCTTCGGATCCCAGGTCC
CCATTCATGAGCCCGAGGCTGTGAGACATGCTCCATGTGCCAAGGGGAGTTCTCACCACATCTT
CCGAGGCTGTCCTAGACATACACTCTTCGGTCTGAGTCAGCATTACCAGAGCAGACAGTGCTGC
TGCTACCTCGAGAAATCGCTGGCCATCAGTGTCCCTGGAAGTCCCTAAGAAAGCCTTGCAGAAT
CTGCAGCTTGTTGGGAATCTGAAACTGCCAATAAAATCAATATTGTGCCTGGAGTAGATGATAA
ATCTGAAGAAAAAGATTACTCCATTGATTCAGAGCTAAACACCGACACTGAACTCTGCTGTTAT
AGAGCATATCATACAGAAAGCTTATCCAAGAGAAGTCCTATCATATTCATCAACAACGTCGAAA
GTAGCCTACTTTAAGAGAAAATATGCAGAAGAAGAAGATCTACATCAAGATTCCCATGGGTATT
TTCCAAAACACCTGATATTACCGGAAGACAGGACTTGTATCCTCAAACTTTCCCTAGAGAAGCT
CAGGTTTCTTGAAGACCCAGAAACCTACCTAAGAAGGTCTGTGTTAATTAACAATTTGCTGAGG
AAGATACACCTAGAGACGGAGAAAGAGAGCTATGAATACTTCAAGGAAGCTCCCTGCTATAAGA
CTGCTTATTCTGATACGAGAAAACGGCTGAAGTTTATGGTACAGGAGTGCTGTTCCCAGTCTCT
CTACTATGAAGAGCTGCACTCCTACCACATTGTGCCTTACACTTCGGAGAGTACCATCTATGGG
ATGGGCTACACTGGTGACCACTTGGAGCAAAATTCTCAGTTGCTCATTTATAAAATGAATTAAA
AAGTAACTGTTAAGTTCATTGAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NR_030734

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	12	74,331,050 - 74,342,724 (+)	NCBI
GRCm38	12	74,284,276 - 74,295,950 (+)	ENTREZGENE
MGSCv37	12	75,385,263 - 75,396,937 (+)	RGD
Celera	12	75,397,424 - 75,409,108 (+)	RGD
cM Map	12		ENTREZGENE

Sequence:

show sequence

GTTCTGAGCCGGAGCGAGAGGCGCTTCAGAGAAGGAGGGACCGACCTGCAGGAGCCGGCCGCCC
CGCCGAGCTGCAGTCGCTGCCGCCGCCGCTGTCGCTGTCGCTGTCAGAACCCGTCCGAAGAGTG
ACACCTTCGCGAAAAAACAGGAGCTGTGAAACATTTGCACACGCAGTCTTCGGATCCCAGGTCC
CCATTCATGAGCCCGAGGCTGTGAGACATGCTCCATGTGCCAAGGGGAGTTCTCACCACATCTT
CCGAGGCTGTCCTAGACATACACTCTTCGGTCTGAGTCAGCATTACCAGACAGTGCTGCTGCTA
CCTCGAGAAATCGCTGGCCATCAGTGTCCCTGGAAGTCCCTAAGAAAGCCTTGCAGAATCTGCA
GCTTGTTGGGAATCTGAAACTGCCAATAAAATCAATATTGTGCCTGGAGTAGATGATAAATCTG
AAGAAAAAGATTACTCCATTGATTCAGAGCTAAACACCGACACTGAACTCTGCTGTTATAGAGC
ATATCATACAGAAAGCTTATCCAAGAGAAGTCCTATCATATTCATCAACAACGTCGAAAGTAGC
CTACTTTAAGAGAAAATATGCAGAAGAAGAAGATCTACATCAAGATTCCCATGGGTATTTTCCA
AAACACCTGATATTACCGGAAGACAGGACTTGTATCCTCAAACTTTCCCTAGAGAAGCTCAGGT
TTCTTGAAGACCCAGAAACCTACCTAAGAAGGTCTGTGTTAATTAACAATTTGCTGAGGAAGAT
ACACCTAGAGACGGAGAAAGAGAGCTATGAATACTTCAAGGAAGCTCCCTGCTATAAGACTGCT
TATTCTGATACGAGAAAACGGCTGAAGTTTATGGTACAGGAGTGCTGTTCCCAGTCTCTCTACT
ATGAAGAGCTGCACTCCTACCACATTGTGCCTTACACTTCGGAGAGTACCATCTATGGGATGGG
CTACACTGGTGACCACTTGGAGCAAAATTCTCAGTTGCTCATTTATAAAATGAATTAAAAAGTA
ACTGTTAAGTTCATTGAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NR_030735

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	12	74,331,050 - 74,342,724 (+)	NCBI
GRCm38	12	74,284,276 - 74,295,950 (+)	ENTREZGENE
MGSCv37	12	75,385,263 - 75,396,937 (+)	RGD
Celera	12	75,397,424 - 75,409,108 (+)	RGD
cM Map	12		ENTREZGENE

Sequence:

show sequence

GTTCTGAGCCGGAGCGAGAGGCGCTTCAGAGAAGGAGGGACCGACCTGCAGGAGCCGGCCGCCC
CGCCGAGCTGCAGTCGCTGCCGCCGCCGCTGTCGCTGTCGCTGTCAGAACCCGTCCGAAGAGTG
ACACCTTCGCGAAAAAACAGGAGCTGTGAAACATTTGCACACGCAGTCTTCGGATCCCAGGTCC
CCATTCATGAGCCCGAGGCTGTGAGACATGCTCCATGTGCCAAGGGGAGTTCTCACCACATCTT
CCGAGGCTGTCCTAGACATACACTCTTCGGTCTGAGTCAGCATTACCAGCTTATCCAAGAGAAG
TCCTATCATATTCATCAACAACGTCGAAAGTAGCCTACTTTAAGAGAAAATATGCAGAAGAAGA
AGATCTACATCAAGATTCCCATGGGTATTTTCCAAAACACCTGATATTACCGGAAGACAGGACT
TGTATCCTCAAACTTTCCCTAGAGAAGCTCAGGTTTCTTGAAGACCCAGAAACCTACCTAAGAA
GGTCTGTGTTAATTAACAATTTGCTGAGGAAGATACACCTAGAGACGGAGAAAGAGAGCTATGA
ATACTTCAAGGAAGCTCCCTGCTATAAGACTGCTTATTCTGATACGAGAAAACGGCTGAAGTTT
ATGGTACAGGAGTGCTGTTCCCAGTCTCTCTACTATGAAGAGCTGCACTCCTACCACATTGTGC
CTTACACTTCGGAGAGTACCATCTATGGGATGGGCTACACTGGTGACCACTTGGAGCAAAATTC
TCAGTTGCTCATTTATAAAATGAATTAAAAAGTAACTGTTAAGTTCATTGAAAAAAAAAAAAAA
AAAA

hide sequence

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P0C1Z5-F1-model_v2	AlphaFold	P0C1Z5	1-52	view protein structure

Promoters

RGD ID:

8678536

Promoter ID:

EPDNEW_M17299

Type:

initiation region

Name:

1700086L19Rik_1

Description:

Mus musculus RIKEN cDNA 1700086L19 gene , transcript variant3, long non-coding RNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	12	74,284,281 - 74,284,341	EPDNEW

RGD ID:

6822538

Promoter ID:

MM_KWN:11937

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Brain

Transcripts:

NR_030733, NR_030734, NR_030735

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	12	75,385,181 - 75,385,681 (+)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1921534	AgrOrtholog
Ensembl Genes	ENSMUSG00000071265	Ensembl
	ENSMUSG00000121877	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000185822	ENTREZGENE
	ENSMUST00000241154	ENTREZGENE
MGD	MGI:1921534	ENTREZGENE
NCBI Gene	74284	ENTREZGENE
PhenoGen	1700086L19Rik	PhenoGen
RNAcentral	URS000075A020	RNACentral
	URS000075A291	RNACentral
	URS000075B602	RNACentral

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Mammalian Phenotype