Gene: Smarca5 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5) Mus musculus
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Symbol:
Smarca5
Name:
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
RGD ID:
1623060
MGI Page
MGI
Description:
Predicted to contribute to histone binding activity. Involved in cellular response to leukemia inhibitory factor; embryo development; and regulation of transcription, DNA-templated. Localizes to ISWI-type complex and chromatin silencing complex. Predicted to colocalize with nuclear replication fork. Is expressed in several structures, including alimentary system; genitourinary system; nervous system; respiratory system; and sensory organ. Orthologous to human SMARCA5 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5); PARTICIPATES IN ISWI family mediated chromatin remodeling pathway; INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 2,2',4,4',5,5'-hexachlorobiphenyl.
Type:
protein-coding
RefSeq Status:
PROVISIONAL
Also known as:
4933427E24Rik; D030040M08Rik; D330027N15Rik; MommeD; MommeD4; mSnf2h; Snf; Snf2h; sucrose nonfermenting protein 2 homolog; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
RGD Orthologs
Alliance Genes
More Info
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More Info
Species
Gene symbol and name
Data Source
Assertion derived from
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Orthologs 1
Homo sapiens (human):
SMARCA5 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5)
HGNC
EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):
Smarca5 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5)
HGNC
Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):
Smarca5 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):
SMARCA5 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Canis lupus familiaris (dog):
SMARCA5 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):
Smarca5 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Sus scrofa (pig):
SMARCA5 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):
SMARCA5 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):
Smarca5 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Other homologs 2
Homo sapiens (human):
SMARCA1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1)
HGNC
OrthoMCL
Alliance orthologs 3
Rattus norvegicus (Norway rat):
Smarca5 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|TreeFam)
Homo sapiens (human):
SMARCA5 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5)
Alliance
DIOPT (Ensembl Compara|HGNC|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|Roundup|TreeFam)
Danio rerio (zebrafish):
smarca5 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5)
Alliance
DIOPT (Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|Roundup|TreeFam|ZFIN)
Saccharomyces cerevisiae (baker's yeast):
ISW1
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|Roundup|TreeFam)
Drosophila melanogaster (fruit fly):
Iswi
Alliance
DIOPT (Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PhylomeDB|Roundup|TreeFam)
Caenorhabditis elegans (roundworm):
isw-1
Alliance
DIOPT (Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PhylomeDB|Roundup|TreeFam)
Saccharomyces cerevisiae (baker's yeast):
ISW2
Alliance
DIOPT (Ensembl Compara|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|Roundup|TreeFam)
Related Pseudogenes:
Gm13034
Gm13135
Gm13136
Gm13140
Gm13231
Smarca5-ps
Latest Assembly:
GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 8 81,426,572 - 81,466,088 (-) NCBI GRCm39 mm39 GRCm38 8 80,699,943 - 80,739,459 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 8 80,698,507 - 80,739,497 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 8 83,223,842 - 83,263,358 (-) NCBI GRCm37 mm9 NCBIm37 MGSCv36 8 83,595,689 - 83,635,205 (-) NCBI mm8 Celera 8 84,973,840 - 85,010,486 (-) NCBI Celera Cytogenetic Map 8 C2 NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Imported Disease Annotations - ClinVar
1,2-dimethylhydrazine multiple interactions EXP 6480464 [1, 2-Dimethylhydrazine co-treated with Folic Acid] results in increased expression of SMARCA5 mRNA CTD PMID:22206623 1,2-dimethylhydrazine affects expression EXP 6480464 1, 2-Dimethylhydrazine affects the expression of SMARCA5 mRNA CTD PMID:22206623 17alpha-ethynylestradiol increases expression EXP 6480464 Ethinyl Estradiol results in increased expression of SMARCA5 mRNA CTD PMID:17942748 17alpha-ethynylestradiol multiple interactions EXP 6480464 [Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of SMARCA5 mRNA CTD PMID:17942748 2,2',4,4',5,5'-hexachlorobiphenyl multiple interactions EXP 6480464 2 more ... CTD PMID:32352317 2,3,7,8-tetrachlorodibenzodioxine multiple interactions EXP 6480464 [Tetrachlorodibenzodioxin co-treated with decitabine] results in increased expression of SMARCA5 mRNA, [Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of SMARCA5 mRNA CTD PMID:15251184 , PMID:17942748 2,3,7,8-tetrachlorodibenzodioxine affects expression EXP 6480464 Tetrachlorodibenzodioxin affects the expression of SMARCA5 mRNA CTD PMID:24680724 2,6-dinitrotoluene affects expression ISO RGD:1308832 6480464 2, 6-dinitrotoluene affects the expression of SMARCA5 mRNA CTD PMID:21346803 2-methylcholine affects expression ISO RGD:1318831 6480464 beta-methylcholine affects the expression of SMARCA5 mRNA CTD PMID:21179406 5-aza-2'-deoxycytidine increases expression EXP 6480464 Decitabine results in increased expression of SMARCA5 mRNA CTD PMID:15251184 5-aza-2'-deoxycytidine multiple interactions EXP 6480464 [Tetrachlorodibenzodioxin co-treated with Decitabine] results in increased expression of SMARCA5 mRNA CTD PMID:15251184 all-trans-retinoic acid decreases expression ISO RGD:1318831 6480464 Tretinoin results in decreased expression of SMARCA5 mRNA CTD PMID:17045167 bisphenol A increases expression EXP 6480464 bisphenol A results in increased expression of SMARCA5 mRNA CTD PMID:26063408 bisphenol A increases expression ISO RGD:1308832 6480464 bisphenol A results in increased expression of SMARCA5 mRNA CTD PMID:25181051 cisplatin multiple interactions ISO RGD:1318831 6480464 [Cisplatin co-treated with jinfukang] results in decreased expression of SMARCA5 mRNA CTD PMID:27392435 cocaine increases expression EXP 6480464 Cocaine results in increased expression of SMARCA5 mRNA CTD PMID:27053203 cocaine multiple interactions EXP 6480464 [SMARCA5 protein co-treated with BAZ1B protein] results in increased susceptibility to Cocaine CTD PMID:27053203 cyclosporin A increases expression ISO RGD:1318831 6480464 Cyclosporine results in increased expression of SMARCA5 mRNA CTD PMID:20106945 dibutyl phthalate decreases expression EXP 6480464 Dibutyl Phthalate results in decreased expression of SMARCA5 mRNA CTD PMID:21266533 dibutyl phthalate increases expression ISO RGD:1308832 6480464 Dibutyl Phthalate results in increased expression of SMARCA5 mRNA CTD PMID:21266533 diclofenac increases expression EXP 6480464 Diclofenac results in increased expression of SMARCA5 mRNA CTD PMID:26934552 doxorubicin decreases expression ISO RGD:1318831 6480464 Doxorubicin results in decreased expression of SMARCA5 mRNA CTD PMID:29803840 elemental selenium decreases expression ISO RGD:1318831 6480464 Selenium results in decreased expression of SMARCA5 mRNA CTD PMID:19244175 folic acid multiple interactions EXP 6480464 [1, 2-Dimethylhydrazine co-treated with Folic Acid] results in increased expression of SMARCA5 mRNA CTD PMID:22206623 formaldehyde decreases expression ISO RGD:1318831 6480464 Formaldehyde results in decreased expression of SMARCA5 mRNA CTD PMID:23649840 genistein increases expression EXP 6480464 Genistein results in increased expression of SMARCA5 mRNA CTD PMID:16169203 gentamycin increases expression ISO RGD:1308832 6480464 Gentamicins results in increased expression of SMARCA5 mRNA CTD PMID:22061828 hydrogen peroxide decreases expression ISO RGD:1318831 6480464 Hydrogen Peroxide results in decreased expression of SMARCA5 mRNA CTD PMID:18951874 hydrogen peroxide affects expression ISO RGD:1318831 6480464 Hydrogen Peroxide affects the expression of SMARCA5 mRNA CTD PMID:21179406 hypochlorous acid increases expression EXP 6480464 Hypochlorous Acid results in increased expression of SMARCA5 mRNA CTD PMID:19376150 lead(0) affects expression ISO RGD:1318831 6480464 Lead affects the expression of SMARCA5 mRNA CTD PMID:28903495 lead(2+) affects expression ISO RGD:1318831 6480464 Lead affects the expression of SMARCA5 mRNA CTD PMID:28903495 miconazole decreases expression EXP 6480464 Miconazole results in decreased expression of SMARCA5 mRNA CTD PMID:27462272 motexafin gadolinium decreases expression ISO RGD:1318831 6480464 motexafin gadolinium results in decreased expression of SMARCA5 mRNA CTD PMID:16357179 motexafin gadolinium multiple interactions ISO RGD:1318831 6480464 [Zinc Acetate co-treated with motexafin gadolinium] results in decreased expression of SMARCA5 mRNA CTD PMID:16357179 N-methyl-4-phenylpyridinium increases expression EXP 6480464 1-Methyl-4-phenylpyridinium results in increased expression of SMARCA5 protein CTD PMID:26558463 N-nitrosodiethylamine increases expression ISO RGD:1308832 6480464 Diethylnitrosamine results in increased expression of SMARCA5 mRNA CTD PMID:19041683 N-nitrosomorpholine increases expression ISO RGD:1308832 6480464 N-nitrosomorpholine results in increased expression of SMARCA5 protein CTD PMID:19716841 oxaliplatin decreases expression ISO RGD:1308832 6480464 oxaliplatin results in decreased expression of SMARCA5 mRNA CTD PMID:25729387 paracetamol decreases expression ISO RGD:1318831 6480464 Acetaminophen results in decreased expression of SMARCA5 mRNA CTD PMID:21420995 phenobarbital decreases expression EXP 6480464 Phenobarbital results in decreased expression of SMARCA5 mRNA CTD PMID:23091169 phenytoin increases expression ISO RGD:1308832 6480464 Phenytoin results in increased expression of SMARCA5 mRNA CTD PMID:20345932 piroxicam decreases expression ISO RGD:1318831 6480464 Piroxicam results in decreased expression of SMARCA5 mRNA CTD PMID:21858171 resveratrol decreases expression EXP 6480464 resveratrol results in decreased expression of SMARCA5 protein CTD PMID:25505154 selenium atom decreases expression ISO RGD:1318831 6480464 Selenium results in decreased expression of SMARCA5 mRNA CTD PMID:19244175 sodium arsenite affects methylation ISO RGD:1318831 6480464 sodium arsenite affects the methylation of SMARCA5 gene CTD PMID:28589171 Soman increases expression ISO RGD:1308832 6480464 Soman results in increased expression of SMARCA5 mRNA CTD PMID:19281266 tetrachloromethane increases expression EXP 6480464 Carbon Tetrachloride results in increased expression of SMARCA5 mRNA CTD PMID:27339419 , PMID:31919559 tetrahydropalmatine decreases expression ISO RGD:1318831 6480464 tetrahydropalmatine results in decreased expression of SMARCA5 protein CTD PMID:20109541 trimellitic anhydride increases expression EXP 6480464 trimellitic anhydride results in increased expression of SMARCA5 mRNA CTD PMID:19042947 tungsten decreases expression EXP 6480464 Tungsten results in decreased expression of SMARCA5 mRNA CTD PMID:30912803 valproic acid decreases expression ISO RGD:1318831 6480464 Valproic Acid results in decreased expression of SMARCA5 mRNA CTD PMID:23179753 vinclozolin decreases expression ISO RGD:1308832 6480464 vinclozolin results in decreased expression of SMARCA5 mRNA CTD PMID:18042343 vinclozolin increases expression ISO RGD:1308832 6480464 vinclozolin results in increased expression of SMARCA5 mRNA CTD PMID:23034163 vitamin E decreases expression ISO RGD:1318831 6480464 Vitamin E results in decreased expression of SMARCA5 mRNA CTD PMID:19244175 zinc acetate multiple interactions ISO RGD:1318831 6480464 [Zinc Acetate co-treated with motexafin gadolinium] results in decreased expression of SMARCA5 mRNA CTD PMID:16357179 zinc acetate decreases expression ISO RGD:1318831 6480464 Zinc Acetate results in decreased expression of SMARCA5 mRNA CTD PMID:16357179