Smarca5 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Smarca5 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5) Mus musculus
Analyze
Symbol: Smarca5
Name: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
RGD ID: 1623060
MGI Page MGI
Description: Predicted to enable several functions, including ATP binding activity; ATP hydrolysis activity; and histone octamer slider activity. Predicted to contribute to histone binding activity. Involved in positive regulation of histone modification; rDNA heterochromatin formation; and regulation of nucleobase-containing compound metabolic process. Acts upstream of or within cellular response to leukemia inhibitory factor; chromatin remodeling; and positive regulation of DNA-templated transcription. Located in nucleus and pericentric heterochromatin. Part of NoRC complex and chromatin silencing complex. Is expressed in several structures, including alimentary system; genitourinary system; nervous system; respiratory system; and sensory organ. Orthologous to human SMARCA5 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 4933427E24Rik; D030040M08Rik; D330027N15Rik; MommeD; MommeD4; mSnf2h; Snf; Snf2h; sucrose nonfermenting protein 2 homolog; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm13034   Gm13135   Gm13136   Gm13140   Gm13231   Smarca5-ps  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39881,426,572 - 81,466,088 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl881,425,136 - 81,466,126 (-)EnsemblGRCm39 Ensembl
GRCm38880,699,943 - 80,739,459 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl880,698,507 - 80,739,497 (-)EnsemblGRCm38mm10GRCm38
MGSCv37883,223,842 - 83,263,358 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36883,595,689 - 83,635,205 (-)NCBIMGSCv36mm8
Celera884,973,840 - 85,010,486 (-)NCBICelera
Cytogenetic Map8C2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. ATP-dependent chromatin remodeling: genetics, genomics and mechanisms. Hargreaves DC and Crabtree GR, Cell Res. 2011 Mar;21(3):396-420. doi: 10.1038/cr.2011.32. Epub 2011 Mar 1.
2. Mouse MP Annotation Import Pipeline RGD automated import pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10880450   PMID:10914549   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11359880   PMID:11532953   PMID:11980720   PMID:12198165   PMID:12368916  
PMID:12434153   PMID:12466851   PMID:12477932   PMID:12769854   PMID:14610273   PMID:14617767   PMID:14681479   PMID:14729942   PMID:15120635   PMID:15284901   PMID:15489334   PMID:15618518  
PMID:15778864   PMID:15782199   PMID:15890782   PMID:15920471   PMID:16085498   PMID:16107646   PMID:16141072   PMID:16141073   PMID:16602821   PMID:16675956   PMID:16678107   PMID:16880268  
PMID:17296600   PMID:17450140   PMID:18287559   PMID:18799693   PMID:19092802   PMID:19482671   PMID:19865483   PMID:20168299   PMID:20211142   PMID:20362541   PMID:20362542   PMID:20412781  
PMID:20439489   PMID:20471682   PMID:21267068   PMID:21589869   PMID:21677750   PMID:21873635   PMID:22083510   PMID:22154806   PMID:22711520   PMID:22770845   PMID:22922362   PMID:23555303  
PMID:23892456   PMID:24025402   PMID:24457600   PMID:24946904   PMID:25245017   PMID:25359213   PMID:26044184   PMID:26365490   PMID:26584622   PMID:27246713   PMID:27732860   PMID:28276606  
PMID:28378742   PMID:29959226   PMID:30186101   PMID:30196744   PMID:30457570   PMID:30595499   PMID:30646012   PMID:30996347   PMID:31068388   PMID:31272467   PMID:31680852   PMID:31919188  
PMID:32098917   PMID:32325033   PMID:32756943   PMID:33899080   PMID:35269430   PMID:36200826  


Genomics

Comparative Map Data
Smarca5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39881,426,572 - 81,466,088 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl881,425,136 - 81,466,126 (-)EnsemblGRCm39 Ensembl
GRCm38880,699,943 - 80,739,459 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl880,698,507 - 80,739,497 (-)EnsemblGRCm38mm10GRCm38
MGSCv37883,223,842 - 83,263,358 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36883,595,689 - 83,635,205 (-)NCBIMGSCv36mm8
Celera884,973,840 - 85,010,486 (-)NCBICelera
Cytogenetic Map8C2NCBI
SMARCA5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384143,513,702 - 143,557,486 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl4143,513,702 - 143,557,486 (+)EnsemblGRCh38hg38GRCh38
GRCh374144,434,855 - 144,478,639 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364144,654,066 - 144,694,017 (+)NCBINCBI36Build 36hg18NCBI36
Build 344144,792,220 - 144,832,171NCBI
Celera4141,764,634 - 141,804,574 (+)NCBICelera
Cytogenetic Map4q31.21NCBI
HuRef4140,164,707 - 140,208,721 (+)NCBIHuRef
CHM1_14144,411,831 - 144,455,839 (+)NCBICHM1_1
T2T-CHM13v2.04146,830,915 - 146,874,681 (+)NCBIT2T-CHM13v2.0
Smarca5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21927,271,918 - 27,304,594 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1927,271,148 - 27,304,594 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1934,130,292 - 34,162,927 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01934,784,348 - 34,816,983 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01937,004,248 - 37,036,904 (+)NCBIRnor_WKY
Rnor_6.01930,936,703 - 30,969,454 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1930,936,703 - 30,969,454 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01941,840,174 - 41,873,900 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41929,122,301 - 29,155,293 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11929,126,640 - 29,160,112 (+)NCBI
Celera1926,788,347 - 26,821,018 (+)NCBICelera
Cytogenetic Map19q11NCBI
Smarca5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547112,203,318 - 12,237,333 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495547112,206,462 - 12,240,219 (-)NCBIChiLan1.0ChiLan1.0
SMARCA5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.14147,174,145 - 147,214,809 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4147,174,060 - 147,214,809 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v04135,874,888 - 135,917,096 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
SMARCA5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11542,731,147 - 42,771,577 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1542,731,426 - 42,770,624 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1543,114,109 - 43,154,330 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01543,391,125 - 43,431,354 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1543,391,132 - 43,431,358 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11542,668,391 - 42,708,501 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01542,752,138 - 42,792,336 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01543,023,307 - 43,063,521 (+)NCBIUU_Cfam_GSD_1.0
Smarca5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530147,420,476 - 47,452,913 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365354,856,672 - 4,890,225 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049365354,857,816 - 4,890,266 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SMARCA5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl884,184,576 - 84,224,871 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1884,184,572 - 84,224,943 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2889,339,602 - 89,379,481 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SMARCA5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1790,366,359 - 90,406,707 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl790,370,305 - 90,410,137 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603769,966,455 - 70,007,230 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Smarca5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248483,569,744 - 3,611,104 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Mir99bmmu-miR-99b-5pOncomiRDBexternal_infoNANA21212412
Mir99ammu-miR-99a-5pOncomiRDBexternal_infoNANA21212412
Mir100mmu-miR-100-5pMirecordsexternal_infoNANA20439489
Mir100mmu-miR-100-5pOncomiRDBexternal_infoNANA21212412

Predicted Target Of
Summary Value
Count of predictions:1292
Count of miRNA genes:690
Interacting mature miRNAs:853
Transcripts:ENSMUST00000043359, ENSMUST00000122807, ENSMUST00000140110, ENSMUST00000142470, ENSMUST00000148455, ENSMUST00000150277
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832506572117965439Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined835109930115563747Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83663015493455280Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837867154110326632Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)84016229795416226Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84809006482090180Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84809006482090180Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84819016882190288Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84924559183245673Mouse
14746987Manh64_mmandible shape 64 (mouse)85050595884505958Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85050595884505958Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85233484386334843Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85474046188740637Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85515925889159407Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85629887290298872Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85892810792928107Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85913640493136404Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86151347995513605Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6418673698186736Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86466617698666325Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined866084397100084549Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined866326836100326976Mouse
10766466Char12_mP. chabaudi malaria resistance QTL 12 (mouse)86872247983326976Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined871032003105032123Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined871032003105032123Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7158942790929226Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871740461124622354Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71740461124622354Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871829531105829637Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined872122809106123021Mouse
1300920Pitm3_mprion incubation time 3 (mouse)Not determined873929123107929226Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)874126628126826739Mouse
1558890Lith18_mlithogenic gene 18 (mouse)Not determined876402145110402251Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined876411976110412125Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined876411976110412125Mouse
1301874Hdlq16_mHDL QTL 16 (mouse)Not determined876411976110412125Mouse
1301099Cbm2_mcerebellum weight 2 (mouse)Not determined879245241113245331Mouse
1301581Char2_mP. chabaudi malaria resistance QTL 2 (mouse)Not determined879808806113809031Mouse
12904012Cfq10_mconditioned fear QTL 10 (mouse)88079340489740987Mouse

Markers in Region
Smarca5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map8C2UniSTS
cM Map838.41UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_053124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC132606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF325921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF375046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK016949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK039811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK050936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK141757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK141758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC009130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC021922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC053069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU024911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000043359   ⟹   ENSMUSP00000044361
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl881,425,136 - 81,466,126 (-)Ensembl
GRCm38.p6 Ensembl880,698,507 - 80,739,497 (-)Ensembl
RefSeq Acc Id: ENSMUST00000122807
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl881,432,114 - 81,466,054 (-)Ensembl
GRCm38.p6 Ensembl880,705,485 - 80,739,425 (-)Ensembl
RefSeq Acc Id: ENSMUST00000140110
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl881,442,588 - 81,444,208 (-)Ensembl
GRCm38.p6 Ensembl880,715,959 - 80,717,579 (-)Ensembl
RefSeq Acc Id: ENSMUST00000142470
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl881,436,055 - 81,438,327 (-)Ensembl
GRCm38.p6 Ensembl880,709,426 - 80,711,698 (-)Ensembl
RefSeq Acc Id: ENSMUST00000148455
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl881,452,211 - 81,453,021 (-)Ensembl
GRCm38.p6 Ensembl880,725,582 - 80,726,392 (-)Ensembl
RefSeq Acc Id: ENSMUST00000150277
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl881,436,367 - 81,437,490 (-)Ensembl
GRCm38.p6 Ensembl880,709,738 - 80,710,861 (-)Ensembl
RefSeq Acc Id: NM_053124   ⟹   NP_444354
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39881,426,572 - 81,466,088 (-)NCBI
GRCm38880,699,943 - 80,739,459 (-)ENTREZGENE
MGSCv37883,223,842 - 83,263,358 (-)RGD
Celera884,973,840 - 85,010,486 (-)RGD
cM Map8 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_444354   ⟸   NM_053124
- UniProtKB: Q925M9 (UniProtKB/Swiss-Prot),   Q91ZW3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000044361   ⟸   ENSMUST00000043359
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q91ZW3-F1-model_v2 AlphaFold Q91ZW3 1-1051 view protein structure

Promoters
RGD ID:8667563
Promoter ID:EPDNEW_M11813
Type:initiation region
Name:Smarca5_2
Description:Mus musculus SWI/SNF related, matrix associated, actin dependentregulator of chromatin, subfamily a, member 5 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M11814  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38880,739,332 - 80,739,392EPDNEW
RGD ID:8667565
Promoter ID:EPDNEW_M11814
Type:initiation region
Name:Smarca5_1
Description:Mus musculus SWI/SNF related, matrix associated, actin dependentregulator of chromatin, subfamily a, member 5 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M11813  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38880,739,480 - 80,739,540EPDNEW
RGD ID:6843745
Promoter ID:MM_KWN:54960
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   ES_Cell
Transcripts:OTTMUST00000058358
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36883,235,126 - 83,235,742 (-)MPROMDB
RGD ID:6843744
Promoter ID:MM_KWN:54962
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:OTTMUST00000058356
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36883,241,541 - 83,242,041 (-)MPROMDB
RGD ID:6843743
Promoter ID:MM_KWN:54963
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:OTTMUST00000058355
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36883,250,091 - 83,250,591 (-)MPROMDB
RGD ID:6843742
Promoter ID:MM_KWN:54964
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000058353,   OTTMUST00000058354
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36883,262,906 - 83,263,742 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1935129 AgrOrtholog
Ensembl Genes ENSMUSG00000031715 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000044361 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000043359 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.1040.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.10810 UniProtKB/Swiss-Prot
  3.40.50.300 UniProtKB/Swiss-Prot
InterPro Helicase_ATP-bd UniProtKB/Swiss-Prot
  Helicase_C UniProtKB/Swiss-Prot
  Homeobox-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ISWI_HAND-dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ISWI_HAND-dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot
  SANT/Myb UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SANT_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SLIDE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SNF2-like_sf UniProtKB/Swiss-Prot
  SNF2_N UniProtKB/Swiss-Prot
KEGG Report mmu:93762 UniProtKB/Swiss-Prot
MGD MGI:1935129 ENTREZGENE
NCBI Gene 93762 ENTREZGENE
Pfam HAND UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Helicase_C UniProtKB/Swiss-Prot
  SLIDE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SNF2_N UniProtKB/Swiss-Prot
PhenoGen Smarca5 PhenoGen
PROSITE HELICASE_ATP_BIND_1 UniProtKB/Swiss-Prot
  HELICASE_CTER UniProtKB/Swiss-Prot
  SANT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART DEXDc UniProtKB/Swiss-Prot
  HELICc UniProtKB/Swiss-Prot
  SANT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF101224 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF46689 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52540 UniProtKB/Swiss-Prot
UniProt Q3U0F8_MOUSE UniProtKB/TrEMBL
  Q91ZW3 ENTREZGENE
  Q925M9 ENTREZGENE
  SMCA5_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q8C791 UniProtKB/Swiss-Prot
  Q8CA22 UniProtKB/Swiss-Prot
  Q8VDG1 UniProtKB/Swiss-Prot
  Q925M9 UniProtKB/Swiss-Prot