Cenpf (centromere protein F) - Rat Genome Database

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Gene: Cenpf (centromere protein F) Mus musculus
Analyze
Symbol: Cenpf
Name: centromere protein F
RGD ID: 1623040
MGI Page MGI
Description: Predicted to enable several functions, including dynein complex binding activity; protein C-terminus binding activity; and protein homodimerization activity. Acts upstream of or within regulation of striated muscle tissue development. Located in cytoskeleton and pronucleus. Part of ciliary transition fiber. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; integumental system; and limb. Used to study dilated cardiomyopathy. Human ortholog(s) of this gene implicated in Stromme syndrome. Orthologous to human CENPF (centromere protein F); INTERACTS WITH 1,1-dichloroethene; 17beta-estradiol; 2,2',4,4',5,5'-hexachlorobiphenyl.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 6530404A22Rik; AI325968; CENF; centromere autoantigen F; Lek; Lek1; leucine, glutamic acid, lysine family 1 protein; mi; mitosin; PRO1779
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391189,372,803 - 189,420,302 (-)NCBIGRCm39mm39
GRCm39 Ensembl1189,372,803 - 189,420,283 (-)Ensembl
GRCm381189,640,606 - 189,688,107 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1189,640,606 - 189,688,086 (-)EnsemblGRCm38mm10GRCm38
MGSCv371191,464,485 - 191,511,965 (-)NCBIGRCm37mm9NCBIm37
MGSCv361191,341,394 - 191,388,874 (-)NCBImm8
Celera1196,559,635 - 196,607,121 (-)NCBICelera
Cytogenetic Map1H6NCBI
cM Map195.03NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
(R)-mevalonic acid  (ISO)
1,1-dichloroethene  (EXP)
1-naphthyl isothiocyanate  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-amino-2-deoxy-D-glucopyranose  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-methylcholanthrene  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (EXP)
5-aza-2'-deoxycytidine  (ISO)
5-azacytidine  (ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
aflatoxin M1  (ISO)
aldehydo-D-glucosamine  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (ISO)
antimycin A  (ISO)
aristolochic acid  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-D-glucosamine  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (ISO)
buta-1,3-diene  (EXP)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
calcitriol  (ISO)
carbamazepine  (ISO)
choline  (EXP)
cisplatin  (ISO)
clobetasol  (EXP)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cryptolepine  (ISO)
Cuprizon  (ISO)
cyclosporin A  (ISO)
Deguelin  (ISO)
dexamethasone  (ISO)
diazinon  (ISO)
dieldrin  (ISO)
dioxygen  (EXP)
disodium selenite  (ISO)
dorsomorphin  (ISO)
doxorubicin  (EXP,ISO)
endosulfan  (ISO)
Enterolactone  (ISO)
etoposide  (ISO)
fenvalerate  (ISO)
folic acid  (EXP,ISO)
folpet  (EXP)
furan  (ISO)
genistein  (ISO)
geraniol  (ISO)
glycidol  (ISO)
hydrogen peroxide  (ISO)
indole-3-methanol  (ISO)
indometacin  (ISO)
irinotecan  (ISO)
isobutanol  (ISO)
L-methionine  (EXP)
leflunomide  (ISO)
lithium chloride  (ISO)
lovastatin  (ISO)
lucanthone  (ISO)
malathion  (ISO)
menadione  (ISO)
methotrexate  (ISO)
methylmercury chloride  (ISO)
methylparaben  (ISO)
methylseleninic acid  (ISO)
miconazole  (EXP)
mitomycin C  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
N-Nitrosopyrrolidine  (ISO)
nickel dichloride  (ISO)
oxaliplatin  (ISO)
ozone  (EXP,ISO)
paclitaxel  (ISO)
palbociclib  (ISO)
paracetamol  (ISO)
PCB138  (EXP,ISO)
phenethyl isothiocyanate  (ISO)
phenformin  (ISO)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
PhIP  (ISO)
pinosylvin  (ISO)
pirinixic acid  (EXP)
progesterone  (ISO)
propanal  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (EXP,ISO)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenite  (EXP,ISO)
sodium dichromate  (EXP)
SP2509  (ISO)
sunitinib  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
thalidomide  (ISO)
thapsigargin  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
trans-pinosylvin  (ISO)
tremolite asbestos  (EXP)
triazines  (EXP)
triclosan  (ISO)
troglitazone  (ISO)
tungsten  (EXP)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vincristine  (ISO)
vorinostat  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:7542657   PMID:7642639   PMID:7651420   PMID:9858811   PMID:10349636   PMID:10373470   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11084331   PMID:11163258   PMID:11217851  
PMID:12154071   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12522145   PMID:12904583   PMID:12974617   PMID:14555653   PMID:14610273   PMID:14681479   PMID:15494374   PMID:15677469  
PMID:15861132   PMID:15870278   PMID:15939891   PMID:16047383   PMID:16107646   PMID:16141072   PMID:16141073   PMID:16672379   PMID:17295207   PMID:17498689   PMID:17785442   PMID:18425850  
PMID:18768859   PMID:18827011   PMID:19793914   PMID:20053638   PMID:21267068   PMID:21873635   PMID:22563055   PMID:23969417   PMID:24823640   PMID:25564561   PMID:26387954   PMID:26496610  
PMID:27146114   PMID:28671696   PMID:29765066   PMID:30104731   PMID:30408335   PMID:30856164   PMID:31478449   PMID:32469866  


Genomics

Comparative Map Data
Cenpf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391189,372,803 - 189,420,302 (-)NCBIGRCm39mm39
GRCm39 Ensembl1189,372,803 - 189,420,283 (-)Ensembl
GRCm381189,640,606 - 189,688,107 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1189,640,606 - 189,688,086 (-)EnsemblGRCm38mm10GRCm38
MGSCv371191,464,485 - 191,511,965 (-)NCBIGRCm37mm9NCBIm37
MGSCv361191,341,394 - 191,388,874 (-)NCBImm8
Celera1196,559,635 - 196,607,121 (-)NCBICelera
Cytogenetic Map1H6NCBI
cM Map195.03NCBI
CENPF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1214,603,195 - 214,664,571 (+)EnsemblGRCh38hg38GRCh38
GRCh381214,603,195 - 214,664,571 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371214,776,538 - 214,837,914 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361212,843,155 - 212,904,537 (+)NCBINCBI36hg18NCBI36
Build 341211,164,926 - 211,226,307NCBI
Celera1187,999,934 - 188,061,298 (+)NCBI
Cytogenetic Map1q41NCBI
HuRef1185,450,388 - 185,511,761 (+)NCBIHuRef
CHM1_11216,048,789 - 216,110,152 (+)NCBICHM1_1
Cenpf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.213101,184,127 - 101,229,714 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl13101,184,127 - 101,229,669 (-)Ensembl
Rnor_6.013108,132,499 - 108,178,609 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13108,132,499 - 108,178,609 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013112,758,855 - 112,804,965 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.413105,920,242 - 105,965,655 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.113106,125,141 - 106,126,183 (-)NCBI
Celera13100,670,298 - 100,715,841 (-)NCBICelera
Cytogenetic Map13q26NCBI
Cenpf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554063,223,993 - 3,273,714 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554063,225,788 - 3,273,037 (-)NCBIChiLan1.0ChiLan1.0
CENPF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11195,025,577 - 195,086,518 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1195,024,877 - 195,086,518 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01190,170,414 - 190,231,478 (+)NCBIMhudiblu_PPA_v0panPan3
CENPF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1712,558,455 - 12,618,637 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl712,555,143 - 12,617,996 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha712,129,485 - 12,194,142 (+)NCBI
ROS_Cfam_1.0712,265,629 - 12,330,197 (+)NCBI
UMICH_Zoey_3.1712,188,652 - 12,253,247 (+)NCBI
UNSW_CanFamBas_1.0712,293,025 - 12,357,544 (+)NCBI
UU_Cfam_GSD_1.0712,421,098 - 12,482,469 (+)NCBI
Cenpf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934461,632,209 - 61,686,939 (-)NCBI
SpeTri2.0NW_0049366283,642,281 - 3,695,262 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CENPF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9128,948,497 - 129,012,218 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19128,948,386 - 129,012,241 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29141,675,880 - 141,740,104 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CENPF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12514,914,805 - 14,972,811 (-)NCBI
ChlSab1.1 Ensembl2514,914,809 - 14,972,796 (-)Ensembl
Vero_WHO_p1.0NW_02366605515,379,185 - 15,438,265 (-)NCBI
Cenpf
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477119,657,489 - 19,702,506 (+)NCBI

Position Markers
D9Mit34.1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map2C1.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11B4UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map1E3UniSTS
Cytogenetic Map5E1UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map16B3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map19D3UniSTS
Cytogenetic Map1H5UniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map9DUniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map17DUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map13A1UniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map12A3UniSTS
Cytogenetic Map1H2.1UniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map7B1UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map5C3.1UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map2C2UniSTS
Cytogenetic Map19CUniSTS
Cytogenetic Map17E1.3UniSTS
Cytogenetic Map5A1UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map13A5UniSTS
Cytogenetic MapXA1.1UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map3A3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map8CUniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map1H1UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map1A2UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map5G1.3UniSTS
Cytogenetic Map7D1-E2UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map1H2.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map15F2UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map1H4-H6UniSTS
Cytogenetic Map12D2UniSTS
Cytogenetic Map1G3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map1H3UniSTS
Cytogenetic Map19BUniSTS
cM Map950.0UniSTS
Whitehead Genetic943.7UniSTS
AI325968  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381189,642,143 - 189,642,232UniSTSGRCm38
MGSCv371191,466,022 - 191,466,111UniSTSGRCm37
Celera1196,561,172 - 196,561,261UniSTS
Cytogenetic Map1H6UniSTS
cM Map1106.3UniSTS
Whitehead/MRC_RH12421.94UniSTS
Cenpf  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381189,640,678 - 189,641,639UniSTSGRCm38
MGSCv371191,464,557 - 191,465,518UniSTSGRCm37
Celera1196,559,707 - 196,560,668UniSTS
Cytogenetic Map1H6UniSTS
cM Map1106.3UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301652Cpfd2_mcerebellum pattern fissures (mouse)Not determined1172571254195471971Mouse
1300948Fglu2_mfasting glucose 2 (mouse)Not determined1157628733191628870Mouse
1301866Cplaq3_mcircadian period of locomotor activity 3 (mouse)Not determined1155893961189895041Mouse
1301565Mnotch_mmodifier of Notch (mouse)Not determined1157628733191628870Mouse
1301596Elnt_mescape latencies during navigation task (mouse)Not determined1162317638194429220Mouse
1301602Bslm4_mbasal locomotor activity 4 (mouse)Not determined1157628733191628870Mouse
1559024Zit1_mzinc induced tolerance 1 (mouse)Not determined1167730317195471971Mouse
1302158Fembrs5_mfemur breaking strength 5 (mouse)Not determined1167730317195471971Mouse
1558802Skmw6_mskeletal muscle weight 6 (mouse)Not determined1168222387195471971Mouse
1302023Orch4_mautoimmune orchitis resistance 4 (mouse)Not determined1175529010195471971Mouse
1301431Pcho1_mplasma cholesterol 1 (mouse)Not determined1159435007193435127Mouse
1300842Sle9_msystematic lupus erythematosus susceptibility 9 (mouse)Not determined1158641251192641372Mouse
1300888Berr1_mberghei resistance locus 1 (mouse)Not determined1164315658190802075Mouse
1301932Ssta2_msusceptibility to Salmonella typhimurium antigens 2 (mouse)Not determined1155888654189888802Mouse
1357620Aaj1_manxiety in A/J 1 (mouse)Not determined1181004752192168463Mouse
1357692Axtq1_manxiety QTL 1 (mouse)Not determined1181004752192168463Mouse
4141483Femwf7_mfemur work to failure 7 (mouse)Not determined167730317195471971Mouse
1302132Pbw1_mpentobarbital withdrawal QTL 1 (mouse)Not determined1156004198190004325Mouse
1300727Mptp1_mMPTP sensitivity 1 (mouse)Not determined1171804480192998742Mouse
1300732Melm2_mmelanoma modifier 2 (mouse)Not determined1157628733191628870Mouse
1300745Gvhd1_mgraft-versus-host disease 1 (mouse)Not determined1157628733191628870Mouse
1357732Tbbmd1_mtotal body bone mineral density 1 (mouse)Not determined1172250913195471971Mouse
4141244Bmd5c_mbone mineral density 5c (mouse)Not determined155699229189699330Mouse
4141245Cq2_mcholesterol QTL 2 (mouse)Not determined1157628733191628870Mouse
1301339Hdlq15_mHDL QTL 15 (mouse)Not determined1166092111195471971Mouse
1301202Yaa4_mY-linked autoimmune acceleration 4 (mouse)Not determined1158641251192641372Mouse
1301216Cbm1_mcerebellum weight 1 (mouse)Not determined1157628733191628870Mouse
1301251Scc3_mcolon tumor susceptibility 3 (mouse)Not determined1168481626195471971Mouse
1301122Cd8mts1_mCD8 T memory cell subset 1 (mouse)Not determined1156004198190004325Mouse
1301132Mors1_mmodifier of obesity related sterility 1 (mouse)Not determined1170647303195471971Mouse
4141165Bglu3_mblood glucose level 3 (mouse)Not determined156004198190004325Mouse
1300823Ath9_matherosclerosis 9 (mouse)Not determined1160285202194285317Mouse
1301619Cafq1_mcaffeine metabolism QTL 1 (mouse)Not determined1155888654189888802Mouse
1301632Bw8q1_mbody weight at 8 weeks QTL 1 (mouse)Not determined1161373696195373830Mouse
10043863Swrl5_mSWR lupus locus 5 (mouse)Not determined1172571254195471971Mouse
10402498Lmr20_mleishmaniasis resistance 20 (mouse)Not determined1158641251192641372Mouse
10054271Nba9_mNew Zealand Black autoimmunity 9 (mouse)Not determined1155698056189699966Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1104005680191493284Mouse
12792983Liq1_mlimb inflammation QTL 1 (mouse)1167758517191493284Mouse
11049575Lmr8b_mleishmaniasis resistance 8b (mouse)1172571254195471971Mouse
11059558Lmr20c_mleishmaniasis resistance 20c (mouse)1158641251192641372Mouse
11059557Lmr20a_mleishmaniasis resistance 20a (mouse)1158641251192641372Mouse
11081167Tir8_mtrypanosome infection response 8 (mouse)1155888654189888802Mouse
12880426V25Dq2_mvitamin D inactive form serum level QTL 2 (mouse)1172800000195471971Mouse
11532690Sluc37_msusceptibility to lung cancer 37 (mouse)1175641251194429220Mouse
12880429V25Dq1_mvitamin D inactive form serum level QTL 1 (mouse)1172900000195471971Mouse
12790987Tgl5_mtriglyceride 5 (mouse)1160269591194269591Mouse
11059556Lmr20b_mleishmaniasis resistance 20b (mouse)1158641251192641372Mouse
12790988Phdlc5_mplasma HDL cholesterol 5 (mouse)9160269591194269591Mouse
10766456Sle21_msystematic lupus erythematosus susceptibility 21 (mouse)1156004198190004325Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1149
Count of miRNA genes:662
Interacting mature miRNAs:824
Transcripts:ENSMUST00000165663, ENSMUST00000165798, ENSMUST00000165962, ENSMUST00000171929
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000165663   ⟹   ENSMUSP00000130308
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1189,416,023 - 189,420,232 (-)Ensembl
GRCm38.p6 Ensembl1189,683,826 - 189,688,035 (-)Ensembl
RefSeq Acc Id: ENSMUST00000165798   ⟹   ENSMUSP00000132430
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1189,374,893 - 189,381,053 (-)Ensembl
GRCm38.p6 Ensembl1189,642,696 - 189,648,856 (-)Ensembl
RefSeq Acc Id: ENSMUST00000165962   ⟹   ENSMUSP00000132759
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1189,390,922 - 189,420,283 (-)Ensembl
GRCm38.p6 Ensembl1189,658,725 - 189,688,086 (-)Ensembl
RefSeq Acc Id: ENSMUST00000171929   ⟹   ENSMUSP00000129738
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1189,372,803 - 189,420,283 (-)Ensembl
GRCm38.p6 Ensembl1189,640,606 - 189,688,086 (-)Ensembl
RefSeq Acc Id: ENSMUST00000194165
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1189,419,257 - 189,420,283 (-)Ensembl
GRCm38.p6 Ensembl1189,687,060 - 189,688,086 (-)Ensembl
RefSeq Acc Id: ENSMUST00000194624
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1189,399,951 - 189,403,339 (-)Ensembl
GRCm38.p6 Ensembl1189,667,754 - 189,671,142 (-)Ensembl
RefSeq Acc Id: NM_001081363   ⟹   NP_001074832
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391189,372,803 - 189,420,283 (-)NCBI
GRCm381189,640,606 - 189,688,086 (-)NCBI
MGSCv371191,464,485 - 191,511,965 (-)RGD
Celera1196,559,635 - 196,607,121 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006497119   ⟹   XP_006497182
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391189,373,800 - 189,420,302 (-)NCBI
GRCm381189,641,603 - 189,688,107 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001074832   ⟸   NM_001081363
- UniProtKB: E9Q3P4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006497182   ⟸   XM_006497119
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000129738   ⟸   ENSMUST00000171929
RefSeq Acc Id: ENSMUSP00000130308   ⟸   ENSMUST00000165663
RefSeq Acc Id: ENSMUSP00000132430   ⟸   ENSMUST00000165798
RefSeq Acc Id: ENSMUSP00000132759   ⟸   ENSMUST00000165962
Protein Domains
CENP-F_C_Rb_bdg   CENP-F_leu_zip   CENP-F_N

Promoters
RGD ID:6876066
Promoter ID:EPDNEW_M1484
Type:initiation region
Name:Cenpf_1
Description:Mus musculus centromere protein F , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381189,688,081 - 189,688,141EPDNEW
RGD ID:6817498
Promoter ID:MM_KWN:3268
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Lung,   MEF_B4
Transcripts:NM_001081363,   UC007EAP.1,   UC007EAQ.1,   UC007EAR.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361191,511,686 - 191,512,186 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1313302 AgrOrtholog
Ensembl Genes ENSMUSG00000026605 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000129738 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000130308 UniProtKB/TrEMBL
  ENSMUSP00000132430 UniProtKB/TrEMBL
  ENSMUSP00000132759 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000165663 UniProtKB/TrEMBL
  ENSMUST00000165798 UniProtKB/TrEMBL
  ENSMUST00000165962 UniProtKB/TrEMBL
  ENSMUST00000171929 ENTREZGENE, UniProtKB/TrEMBL
InterPro Cenp-F UniProtKB/TrEMBL
  Centromere_CenpF_leu-rich_rpt UniProtKB/TrEMBL
  Centromere_CenpF_N UniProtKB/TrEMBL
  Centromere_CenpF_Rb-prot-bd UniProtKB/TrEMBL
KEGG Report mmu:108000 UniProtKB/TrEMBL
MGD MGI:1313302 ENTREZGENE
NCBI Gene 108000 ENTREZGENE
PANTHER PTHR18874 UniProtKB/TrEMBL
Pfam Cenp-F_leu_zip UniProtKB/TrEMBL
  Cenp-F_N UniProtKB/TrEMBL
  Rb-bdg_C_Cenp-F UniProtKB/TrEMBL
PhenoGen Cenpf PhenoGen
UniProt E9PY14_MOUSE UniProtKB/TrEMBL
  E9Q3P4 ENTREZGENE, UniProtKB/TrEMBL
  E9Q776_MOUSE UniProtKB/TrEMBL
  F6V6F0_MOUSE UniProtKB/TrEMBL
  Q155P7_MOUSE UniProtKB/TrEMBL
  Q3TNJ4_MOUSE UniProtKB/TrEMBL
  Q3TZQ0_MOUSE UniProtKB/TrEMBL
  Q8BV30_MOUSE UniProtKB/TrEMBL
  Q8BVF5_MOUSE UniProtKB/TrEMBL
  Q8C0X4_MOUSE UniProtKB/TrEMBL
  Q9CUL0_MOUSE UniProtKB/TrEMBL
  Q9QZ84_MOUSE UniProtKB/TrEMBL