Mdfic2 (MyoD family inhibitor domain containing 2) - Rat Genome Database
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Gene: Mdfic2 (MyoD family inhibitor domain containing 2) Mus musculus
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Symbol: Mdfic2
Name: MyoD family inhibitor domain containing 2
RGD ID: 1622832
MGI Page MGI
Description: Orthologous to human MDFIC2 (MyoD family inhibitor domain containing 2).
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: Gm765; hypothetical protein LOC330390; myoD family inhibitor domain-containing protein 2; uncharacterized protein LOC330390
RGD Orthologs
Human
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39698,212,665 - 98,319,715 (-)NCBIGRCm39mm39
GRCm38698,238,014 - 98,342,754 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl698,235,708 - 98,342,754 (-)EnsemblGRCm38mm10GRCm38
MGSCv37698,188,008 - 98,292,748 (-)NCBIGRCm37mm9NCBIm37
MGSCv36698,203,540 - 98,308,135 (-)NCBImm8
Celera6100,098,354 - 100,203,386 (-)NCBICelera
Cytogenetic Map6D3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Mdfic2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39698,212,665 - 98,319,715 (-)NCBIGRCm39mm39
GRCm38698,238,014 - 98,342,754 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl698,235,708 - 98,342,754 (-)EnsemblGRCm38mm10GRCm38
MGSCv37698,188,008 - 98,292,748 (-)NCBIGRCm37mm9NCBIm37
MGSCv36698,203,540 - 98,308,135 (-)NCBImm8
Celera6100,098,354 - 100,203,386 (-)NCBICelera
Cytogenetic Map6D3NCBI
MDFIC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl370,194,479 - 70,312,638 (-)EnsemblGRCh38hg38GRCh38
GRCh38370,194,479 - 70,312,638 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37370,243,630 - 70,361,789 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map3p13NCBI
CHM1_1370,194,911 - 70,313,069 (-)NCBICHM1_1
Mdfic2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24130,845,260 - 130,948,054 (-)NCBI
Rnor_6.04130,649,564 - 130,751,397 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04195,031,931 - 195,246,182 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44132,858,542 - 133,083,891 (-)NCBIRGSC3.4rn4RGSC3.4
Celera4119,718,570 - 119,821,412 (-)NCBICelera
Cytogenetic Map4q34NCBI
MDFIC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1371,497,457 - 71,612,601 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl371,497,457 - 71,611,948 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0370,133,229 - 70,251,520 (-)NCBIMhudiblu_PPA_v0panPan3
MDFIC2
(Canis lupus familiaris - dog)
No map positions available.
Mdfic2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366032,042,355 - 2,052,291 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MDFIC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1351,629,377 - 51,741,546 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11351,631,445 - 51,742,570 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21356,832,814 - 56,913,242 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MDFIC2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12231,193,837 - 31,304,898 (-)NCBI
Mdfic2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247734,780,884 - 4,790,397 (-)NCBI

Position Markers
D6Mit165  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38698,258,792 - 98,258,933UniSTSGRCm38
MGSCv37698,208,786 - 98,208,927UniSTSGRCm37
Celera6100,119,231 - 100,119,372UniSTS
Cytogenetic Map6D3UniSTS
cM Map642.0UniSTS
Whitehead Genetic633.9UniSTS
Whitehead_YAC6 UniSTS
D6Mit66  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38698,270,318 - 98,270,528UniSTSGRCm38
MGSCv37698,220,312 - 98,220,522UniSTSGRCm37
Cytogenetic Map6D3UniSTS
cM Map641.0UniSTS
Whitehead Genetic633.9UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681500000102200000Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684122513118122513Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686806805113544602Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687503360121503555Mouse
1301262Gasa3_mgastritis type A susceptibility locus 3 (mouse)Not determined689005405123005603Mouse
1301244Ichs_mimmediate cutaneous hypersensitivity QTL (mouse)Not determined690795610124795846Mouse
11532719Sluc45_msusceptibility to lung cancer 45 (mouse)69260730698258933Mouse
4141578Obrq1_mobesity resistance QTL 1 (mouse)Not determined92607306112004738Mouse
11353842Bmiq4_mbody mass index QTL 4 (mouse)692607306146429238Mouse
1301292Cfbw2_mcystic fibrosis body weight 2 (mouse)Not determined695004651129004738Mouse
1300704Cia3_mcollagen induced arthritis QTL 3 (mouse)Not determined696347325130347522Mouse
11040599Lmr4b_mleishmaniasis resistance 4b (mouse)696347325130347522Mouse
4141940W6q5_mweight 6 weeks QTL 5 (mouse)Not determined96655951146633626Mouse
4142416Egq11_mearly growth QTL 11 (mouse)Not determined96655951146633626Mouse
1357555Tesq2_mtestis weight QTL 2 (mouse)Not determined696655951146633626Mouse
10043923Bhr7_mbronchial hyperresponsiveness 7 (mouse)Not determined698242853132242977Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:129
Count of miRNA genes:127
Interacting mature miRNAs:129
Transcripts:ENSMUST00000164491
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000164491   ⟹   ENSMUSP00000127120
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl698,235,708 - 98,342,754 (-)Ensembl
RefSeq Acc Id: ENSMUST00000204914
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl698,341,463 - 98,342,659 (-)Ensembl
RefSeq Acc Id: NM_001128092   ⟹   NP_001121564
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39698,214,975 - 98,319,715 (-)NCBI
GRCm38698,238,014 - 98,342,754 (-)ENTREZGENE
MGSCv37698,188,008 - 98,292,748 (-)RGD
Celera6100,098,354 - 100,203,386 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036166250   ⟹   XP_036022143
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39698,212,665 - 98,228,032 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001121564 (Get FASTA)   NCBI Sequence Viewer  
  XP_036022143 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI47267 (Get FASTA)   NCBI Sequence Viewer  
  AAI47268 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001121564   ⟸   NM_001128092
- UniProtKB: B2RVL9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000127120   ⟸   ENSMUST00000164491
RefSeq Acc Id: XP_036022143   ⟸   XM_036166250
- Peptide Label: isoform X1

Promoters
RGD ID:6890628
Promoter ID:EPDNEW_M8716
Type:initiation region
Name:Gm765_1
Description:Mus musculus predicted gene 765 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38698,342,671 - 98,342,731EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2685611 AgrOrtholog
Ensembl Genes ENSMUSG00000090667 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000127120 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000164491 ENTREZGENE, UniProtKB/TrEMBL
InterPro MDFI/MDFIC UniProtKB/TrEMBL
KEGG Report mmu:330390 UniProtKB/TrEMBL
MGD MGI:2685611 ENTREZGENE
NCBI Gene 330390 ENTREZGENE
PANTHER PTHR15304 UniProtKB/TrEMBL
Pfam MDFI UniProtKB/TrEMBL
PhenoGen Mdfic2 PhenoGen
UniProt B2RVL9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-10-19 Mdfic2  MyoD family inhibitor domain containing 2  Gm765  predicted gene 765  Symbol and/or name updated 27372883 PROVISIONAL