Gm10033 (predicted gene 10033) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Gm10033 (predicted gene 10033) Mus musculus
Analyze
Symbol: Gm10033
Name: predicted gene 10033
RGD ID: 1622818
MGI Page MGI
Description:
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 9330175B10Rik; E230024E03Rik; ENSMUSG00000057924; ENSMUSG00000071083; Gm10311; hypothetical protein LOC319933; hypothetical protein LOC378466; RIKEN cDNA E230024E03 gene; uncharacterized protein LOC319933
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39869,821,180 - 69,848,196 (-)NCBIGRCm39mm39
GRCm38869,368,528 - 69,395,544 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl869,366,510 - 69,395,539 (-)EnsemblGRCm38mm10GRCm38
MGSCv37871,892,759 - 71,902,661 (-)NCBIGRCm37mm9NCBIm37
Celera871,922,551 - 71,932,452 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073  


Genomics

Position Markers
D8Mit130  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38869,379,377 - 69,379,526UniSTSGRCm38
MGSCv37871,903,276 - 71,903,425UniSTSGRCm37
Cytogenetic Map8B3.3UniSTS
cM Map833.0UniSTS
Whitehead Genetic835.0UniSTS
Whitehead/MRC_RH8730.8UniSTS
Whitehead_YAC8 UniSTS
BF392548  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38869,370,002 - 69,370,228UniSTSGRCm38
MGSCv37871,893,901 - 71,894,127UniSTSGRCm37
Celera871,923,693 - 71,923,919UniSTS
Cytogenetic Map8B3.3UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558870Eae36_mexperimental allergic encephalomyelitis susceptibility 36 (mouse)Not determined81472316071045600Mouse
1357811Orq3_movulation rate QTL 3 (mouse)Not determined83201654471287993Mouse
4141437W10q14_mweight 10 weeks QTL 14 (mouse)Not determined3201654471287993Mouse
4141172W6q9_mweight 6 weeks QTL 9 (mouse)Not determined3201654471287993Mouse
4140966Egq12_mearly growth QTL 12 (mouse)Not determined3201654471287993Mouse
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
1301544Iba3_minduction of brown adipocytes 3 (mouse)Not determined84429488078295025Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84763703081637146Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84763703081637146Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84773713481737254Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84879293982793021Mouse
14746987Manh64_mmandible shape 64 (mouse)85005330684053306Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85005330684053306Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
10766466Char12_mP. chabaudi malaria resistance QTL 12 (mouse)86826982782600347Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:58
Count of miRNA genes:55
Interacting mature miRNAs:55
Transcripts:ENSMUST00000072427
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000072427   ⟹   ENSMUSP00000159375
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl869,366,510 - 69,395,522 (-)Ensembl
RefSeq Acc Id: ENSMUST00000211874
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl869,394,612 - 69,395,539 (-)Ensembl
RefSeq Acc Id: ENSMUST00000211954
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl869,380,340 - 69,395,528 (-)Ensembl
RefSeq Acc Id: ENSMUST00000213012   ⟹   ENSMUSP00000159301
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl869,366,510 - 69,395,522 (-)Ensembl
RefSeq Acc Id: ENSMUST00000239413   ⟹   ENSMUSP00000159370
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl869,372,145 - 69,373,383 (-)Ensembl
RefSeq Acc Id: ENSMUST00000239456   ⟹   ENSMUSP00000159337
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl869,366,510 - 69,395,539 (-)Ensembl
RefSeq Acc Id: ENSMUST00000239492   ⟹   ENSMUSP00000159343
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl869,373,528 - 69,373,914 (-)Ensembl
RefSeq Acc Id: NM_001374599   ⟹   NP_001361528
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39869,821,180 - 69,848,191 (-)NCBI
GRCm38869,368,528 - 69,395,539 (-)NCBI
RefSeq Acc Id: NM_001374600   ⟹   NP_001361529
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39869,821,180 - 69,848,191 (-)NCBI
GRCm38869,368,528 - 69,395,539 (-)NCBI
RefSeq Acc Id: NR_038043
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39869,821,264 - 69,848,196 (-)NCBI
GRCm38869,368,612 - 69,395,544 (-)NCBI
Celera871,924,716 - 71,948,091 (-)ENTREZGENE
cM Map8 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001361528 (Get FASTA)   NCBI Sequence Viewer  
  NP_001361529 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAC28666 (Get FASTA)   NCBI Sequence Viewer  
  BAC87671 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001361529   ⟸   NM_001374600
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001361528   ⟸   NM_001374599
- Peptide Label: isoform 1
RefSeq Acc Id: ENSMUSP00000159370   ⟸   ENSMUST00000239413
RefSeq Acc Id: ENSMUSP00000159343   ⟸   ENSMUST00000239492
RefSeq Acc Id: ENSMUSP00000159337   ⟸   ENSMUST00000239456
RefSeq Acc Id: ENSMUSP00000159375   ⟸   ENSMUST00000072427
RefSeq Acc Id: ENSMUSP00000159301   ⟸   ENSMUST00000213012
Protein Domains
C2H2-type   KRAB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000110444 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000159301 UniProtKB/TrEMBL
  ENSMUSP00000159337 UniProtKB/TrEMBL
  ENSMUSP00000159343 UniProtKB/TrEMBL
  ENSMUSP00000159370 UniProtKB/TrEMBL
  ENSMUSP00000159375 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000072427 UniProtKB/TrEMBL
  ENSMUST00000213012 UniProtKB/TrEMBL
  ENSMUST00000239413 UniProtKB/TrEMBL
  ENSMUST00000239456 UniProtKB/TrEMBL
  ENSMUST00000239492 UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  ZNF781 UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
MGD MGI:3642803 ENTREZGENE
NCBI Gene 378466 ENTREZGENE
PANTHER PTHR14947 UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PhenoGen Gm10033 PhenoGen
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniGene Mm.37846 ENTREZGENE
UniProt A0A6I8MX02_MOUSE UniProtKB/TrEMBL
  A0A6I8MX06_MOUSE UniProtKB/TrEMBL
  A0A6I8MX21_MOUSE UniProtKB/TrEMBL
  A0A6I8MX23_MOUSE UniProtKB/TrEMBL
  Q6ZQL5_MOUSE UniProtKB/TrEMBL
  Q8BZK6_MOUSE UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-07 Gm10033  predicted gene 10033  E230024E03Rik  RIKEN cDNA E230024E03 gene  Data Merged 737654 PROVISIONAL