Gm5485 (predicted gene 5485) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Gm5485 (predicted gene 5485) Mus musculus
Analyze
Symbol: Gm5485
Name: predicted gene 5485
RGD ID: 1622669
MGI Page MGI
Description: Orthologous to human C3orf85 (chromosome 3 open reading frame 85).
Type: ncrna (Ensembl: protein-coding)
RefSeq Status: PREDICTED
Previously known as: EG433023
RGD Orthologs
Human
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391648,219,816 - 48,232,779 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1648,219,816 - 48,232,779 (-)EnsemblGRCm39 Ensembl
GRCm381648,399,453 - 48,412,416 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1648,399,453 - 48,412,416 (-)EnsemblGRCm38mm10GRCm38
MGSCv371648,399,566 - 48,412,529 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361648,319,077 - 48,332,036 (-)NCBIMGSCv36mm8
Celera1648,761,519 - 48,774,473 (-)NCBICelera
Cytogenetic Map16B5NCBI
cM Map1630.75NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073  


Genomics

Comparative Map Data
Gm5485
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391648,219,816 - 48,232,779 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1648,219,816 - 48,232,779 (-)EnsemblGRCm39 Ensembl
GRCm381648,399,453 - 48,412,416 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1648,399,453 - 48,412,416 (-)EnsemblGRCm38mm10GRCm38
MGSCv371648,399,566 - 48,412,529 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361648,319,077 - 48,332,036 (-)NCBIMGSCv36mm8
Celera1648,761,519 - 48,774,473 (-)NCBICelera
Cytogenetic Map16B5NCBI
cM Map1630.75NCBI
C3orf85
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383109,136,719 - 109,151,401 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3109,118,252 - 109,151,401 (+)EnsemblGRCh38hg38GRCh38
GRCh373108,855,566 - 108,870,248 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363110,333,827 - 110,351,764 (+)NCBINCBI36Build 36hg18NCBI36
Celera3107,253,298 - 107,266,693 (+)NCBICelera
Cytogenetic Map3q13.13NCBI
HuRef3106,229,128 - 106,242,525 (+)NCBIHuRef
CHM1_13108,819,719 - 108,833,114 (+)NCBICHM1_1
T2T-CHM13v2.03111,856,999 - 111,871,681 (+)NCBIT2T-CHM13v2.0
C11H3orf85
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81165,871,798 - 65,883,497 (+)NCBIGRCr8
C2H3orf85
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22107,119,644 - 107,135,437 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13107,124,423 - 107,140,216 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03106,268,150 - 106,283,100 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13113,183,723 - 113,210,340 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3113,196,935 - 113,209,947 (+)Ensemblpanpan1.1panPan2
C33H3orf85
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha3314,424,141 - 14,438,528 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03314,487,558 - 14,501,967 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3314,487,525 - 14,501,456 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13314,356,223 - 14,370,657 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03314,423,139 - 14,437,527 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03314,833,289 - 14,847,690 (+)NCBIUU_Cfam_GSD_1.0
CUNH3orf85
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602140,111,087 - 140,123,930 (-)NCBIHiC_Itri_2
LOC110256429
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13150,355,253 - 150,372,220 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113150,356,255 - 150,372,272 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CUNH3orf85
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366604194,810,302 - 94,824,892 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Gm5485
331 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226768Tibl9_mtibia length 9, 5 week (mouse)16331786451420363Mouse
27226785Feml12_mfemur length 12, 5 week (mouse)16331786464620363Mouse
26884432Zlq7_mzygomatic length QTL 7, 10 week (mouse)16381786464620363Mouse
1357763Lp1_mlymphocyte proliferation 1 (mouse)Not determined16654297965466552Mouse
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16841786490896888Mouse
10045614Rapop6_mradiation-induced apoptosis 6 (mouse)Not determined161480292148803032Mouse
4142236Pstc4_mperiosteal circumference 4 (mouse)Not determined161552290949523112Mouse
1357517Bwtn1_mbody weight at necropsy 1 (mouse)Not determined162001932985600826Mouse
1300534Bmd15_mbone mineral density 15 (mouse)Not determined162193838355938574Mouse
4141179Ipng3_mimprinted postnatal growth 3 (mouse)Not determined2277525257594076Mouse
11059559Lmr12a_mleishmaniasis resistance 12a (mouse)162879281362792952Mouse
11059560Lmr12b_mleishmaniasis resistance 12b (mouse)162879281362792952Mouse
11049571Lmr12c_mleishmaniasis resistance 12c (mouse)162879281362792952Mouse
1300915Lmr12_mleishmaniasis resistance 12 (mouse)Not determined162879281362792952Mouse
1301070Cypr1_mcytokine production 1 (mouse)Not determined163231279566312933Mouse
4142187Arrd3_mage-related retinal degeneration 3 (mouse)Not determined3252290965466552Mouse
1302096Aod1a_mautoimmune ovarian dysgenesis 1a (mouse)Not determined163544664392573008Mouse
26884416Bzwq5_mbi-zygomatic width QTL 5, 5 week (mouse)163732036284696888Mouse
4142112Skts-fp3_mskin tumor susceptibility in FVB and PWK 3 (mouse)Not determined164005388172924385Mouse
11522747Eae41_mexperimental allergic encephalomyelitis susceptibility 41 (mouse)164039913478015472Mouse
1301138Pcd4ts3_mp-glycoprotein positive CD4 T cell subset 3 (mouse)Not determined164059392374594076Mouse
1357778Diobq_mdiet-induced obesity QTL (mouse)Not determined164219781782331174Mouse
4141212Imraq3_mimmune response to AAV2 QTL 3 (mouse)Not determined164438335078383506Mouse
1301719Remslp3_mrapid eye movement sleep 3 (mouse)Not determined164438335078383506Mouse
1558836Dice1b_mdetermination of interleukin 4 commitment 1b (mouse)Not determined164551100072274485Mouse
14928310Manh80_mmandible shape 80 (mouse)164821984182219841Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000212197   ⟹   ENSMUSP00000148687
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1648,219,816 - 48,232,779 (-)Ensembl
GRCm38.p6 Ensembl1648,399,453 - 48,412,416 (-)Ensembl
RefSeq Acc Id: NR_015373
RefSeq Status: PREDICTED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391648,219,816 - 48,232,779 (-)NCBI
GRCm381648,399,453 - 48,412,416 (-)ENTREZGENE
MGSCv371648,399,566 - 48,412,529 (-)RGD
Celera1648,761,519 - 48,774,473 (-)RGD
cM Map16 ENTREZGENE
Sequence:
Protein Sequences
GenBank Protein EDK98093 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000148687.2
Reference Protein Sequences
RefSeq Acc Id: ENSMUSP00000148687   ⟸   ENSMUST00000212197

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A1D5RM98-F1-model_v2 AlphaFold A0A1D5RM98 1-91 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3647875 AgrOrtholog
Ensembl Genes ENSMUSG00000110573 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000212197 ENTREZGENE
  ENSMUST00000212197.2 UniProtKB/TrEMBL
MGD MGI:3647875 ENTREZGENE
NCBI Gene 433023 ENTREZGENE
PhenoGen Gm5485 PhenoGen
RNAcentral URS000075C89C RNACentral
UniProt A0A1D5RM98_MOUSE UniProtKB/TrEMBL