Gm5611 (predicted gene 5611) - Rat Genome Database

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Gene: Gm5611 (predicted gene 5611) Mus musculus
Analyze
Symbol: Gm5611
Name: predicted gene 5611
RGD ID: 1622651
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG434373
Related Functional Gene: Npm1  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39916,941,262 - 16,942,492 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl916,941,341 - 16,942,192 (+)EnsemblGRCm39 Ensembl
GRCm38917,029,966 - 17,031,196 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl917,030,045 - 17,030,896 (+)EnsemblGRCm38mm10GRCm38
MGSCv37916,834,412 - 16,835,540 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36916,780,353 - 16,781,630 (+)NCBIMGSCv36mm8
Celera914,310,220 - 14,311,348 (+)NCBICelera
Cytogenetic Map9A2NCBI
cM Map95.4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Gm5611
46 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:51
Count of miRNA genes:50
Interacting mature miRNAs:51
Transcripts:ENSMUST00000164523
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
35673312Ari7_mantibody response to influenza 7, day 45, IgG3 (mouse)9780000122211296Mouse
1300849Sles4_msystemic lupus erythmatosus suppressor 4 (mouse)Not determined9910756237306370Mouse
12880416V125Dq8_mvitamin D active form serum level QTL 8 (mouse)91601129650011296Mouse
13434920Dcollq1_mdifferential colonization level QTL 1 (mouse)9130341840Mouse
1300532Tbs2_mtuberculosis severity 2 (mouse)Not determined91236997046370114Mouse
4141591Cq4_mcholesterol QTL 4 (mouse)Not determined91541175149411890Mouse
4142326Tgq19_mtriglyceride QTL 19 (mouse)Not determined121060750Mouse
11354951Pdcc3_mplasmacytoid dentritic cell compartment 3 (mouse)91574962749749627Mouse
13504834Hdlq109_mHDL QTL 109 (mouse)91670964150709641Mouse
13504833Bglu19_mblood glucose level 19 (mouse)9991076843910768Mouse
1300899Chol6_mcholesterol 6 (mouse)Not determined9129902913Mouse
1357637Si5lq2_mserum IGFBP-5 level QTL 2 (mouse)Not determined91541175149411890Mouse
12790993Adq1_maortic diameter QTL 1 (mouse)91574962749749627Mouse
10043917Obq37_mobesity QTL 37 (mouse)Not determined91339117547391175Mouse
12790997Adq2_maortic diameter QTL 2 (mouse)91574962749749627Mouse
4141447Cfmq2_mcystic fibrosis modifier QTL 2 (mouse)Not determined91541175149411890Mouse
12880415V125Dq7_mvitamin D active form serum level QTL 7 (mouse)91601129650011296Mouse
1301421Lgth4_mbody length 4 (mouse)Not determined91541175149411890Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_020946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC154357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000164523
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl916,941,341 - 16,942,192 (+)Ensembl
GRCm38.p6 Ensembl917,030,045 - 17,030,896 (+)Ensembl
Promoters
RGD ID:6844588
Promoter ID:MM_KWN:56443
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:XM_486188_GM5611
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36916,834,511 - 16,835,011 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000090602 Ensembl
MGD MGI:3647121 ENTREZGENE
NCBI Gene 434373 ENTREZGENE
PhenoGen Gm5611 PhenoGen