Gm5785 (predicted gene 5785) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Gm5785 (predicted gene 5785) Mus musculus
Analyze
Symbol: Gm5785
Name: predicted gene 5785
RGD ID: 1622631
MGI Page MGI
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: EG544864; translation initiation factor IF-2; uncharacterized protein Gm5785
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391251,874,968 - 51,882,458 (+)NCBIGRCm39GRCm39mm39
GRCm381251,828,185 - 51,835,675 (+)NCBIGRCm38GRCm38mm10GRCm38
MGSCv371252,929,172 - 52,933,444 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361252,749,805 - 52,754,077 (+)NCBIMGSCv36mm8
MGSCv361246,268,367 - 46,272,639 (+)NCBIMGSCv36mm8
Cytogenetic Map12B3NCBI
cM Map1222.11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18799693  


Genomics

Variants

.
Variants in Gm5785
300 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
13524839Ppiq10_mprepulse inhibition QTL 10 (mouse)121304319554945798Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
1300870Ath18_matherosclerosis 18 (mouse)Not determined121825996652260067Mouse
12904956Edlmmq10_mextensor digitorum longus muscle mass QTL 10 (mouse)121973983353739833Mouse
1302172Skts5_mskin tumor susceptibility 5 (mouse)Not determined122214886656149016Mouse
1301989Hdlq18_mHDL QTL 18 (mouse)Not determined122916068563160884Mouse
1300636Gct2_mgranulosa cell tumorigenesis 2 (mouse)Not determined122916068563160884Mouse
4141843Moen3_mmodifier of engrailed QTL 3 (mouse)Not determined122980158463801733Mouse
14747008Mancz10_mmandible centroid size 10 (mouse)122986352263863522Mouse
10402492Dipa8_mdrug induced psychomotor activation 8 (mouse)Not determined123493387268934019Mouse
1300818Bbaa10_mB.burgdorferi-associated arthritis 10 (mouse)Not determined123509100465511019Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124169317590887526Mouse


Expression


Sequence


RefSeq Acc Id: XM_011244243   ⟹   XP_011242545
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391251,874,968 - 51,882,458 (+)NCBI
GRCm381251,828,185 - 51,835,675 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_011242545 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAC28278 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_011242545   ⟸   XM_011244243
- Sequence:

Promoters
RGD ID:6823004
Promoter ID:MM_KWN:11616
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:AK033420_GM5785,   ENSMUST00000042052,   NM_144788,   UC007NMZ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361252,930,251 - 52,933,902 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
MGD MGI:3643232 ENTREZGENE
NCBI Gene 544864 ENTREZGENE
PhenoGen Gm5785 PhenoGen
UniProt Q8CCC9_MOUSE UniProtKB/TrEMBL