Gm5916 (predicted gene 5916) - Rat Genome Database

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Gene: Gm5916 (predicted gene 5916) Mus musculus
Analyze
No known orthologs.
Symbol: Gm5916
Name: predicted gene 5916
RGD ID: 1622622
MGI Page MGI
Description:
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: EG546123; prostate and testis expressed family member
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39936,030,660 - 36,040,141 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl936,031,116 - 36,040,075 (-)EnsemblGRCm39 Ensembl
GRCm38936,119,364 - 36,128,845 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl936,119,934 - 36,128,779 (-)EnsemblGRCm38mm10GRCm38
MGSCv37935,927,519 - 35,936,364 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36935,869,605 - 35,878,450 (-)NCBIMGSCv36mm8
Celera933,339,156 - 33,344,985 (-)NCBICelera
Cytogenetic Map9A4NCBI
cM Map920.63NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:18387948  


Genomics

Variants

.
Variants in Gm5916
443 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:167
Count of miRNA genes:143
Interacting mature miRNAs:150
Transcripts:ENSMUST00000168452
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300849Sles4_msystemic lupus erythmatosus suppressor 4 (mouse)Not determined9910756237306370Mouse
13504833Bglu19_mblood glucose level 19 (mouse)9991076843910768Mouse
1300532Tbs2_mtuberculosis severity 2 (mouse)Not determined91236997046370114Mouse
10043917Obq37_mobesity QTL 37 (mouse)Not determined91339117547391175Mouse
1357637Si5lq2_mserum IGFBP-5 level QTL 2 (mouse)Not determined91541175149411890Mouse
4141591Cq4_mcholesterol QTL 4 (mouse)Not determined91541175149411890Mouse
1301421Lgth4_mbody length 4 (mouse)Not determined91541175149411890Mouse
4141447Cfmq2_mcystic fibrosis modifier QTL 2 (mouse)Not determined91541175149411890Mouse
12790993Adq1_maortic diameter QTL 1 (mouse)91574962749749627Mouse
11354951Pdcc3_mplasmacytoid dentritic cell compartment 3 (mouse)91574962749749627Mouse
12790997Adq2_maortic diameter QTL 2 (mouse)91574962749749627Mouse
12880415V125Dq7_mvitamin D active form serum level QTL 7 (mouse)91601129650011296Mouse
12880416V125Dq8_mvitamin D active form serum level QTL 8 (mouse)91601129650011296Mouse
13504834Hdlq109_mHDL QTL 109 (mouse)91670964150709641Mouse
1357465Vtbt6_mvertebral trabecular bone trait 6 (mouse)Not determined91697884050978943Mouse
1300643Pvcan2_mprotection against vaginal candidiasis 2 (mouse)Not determined91994340653943525Mouse
1301439Morph2_mmorphine antinociception 2 (mouse)Not determined92015336254153492Mouse
1301883Skull12_mskull morphology 12 (mouse)Not determined92030619754306370Mouse
1301045Sluc10_msusceptibility to lung cancer 10 (mouse)Not determined92030619754306370Mouse
10043950Pbft5_mpercent body fat 5 (mouse)Not determined92030619754306370Mouse
4142352Lmr17_mleishmaniasis resistance 17 (mouse)Not determined92030619754306370Mouse
12904939Edlmmq8_mextensor digitorum longus muscle mass QTL 8 (mouse)92085274054852740Mouse
13208563Bmiq8_mbody mass index QTL 8 (mouse)92491129668907282Mouse
11532712Sluc39d_msusceptibility to lung cancer 39d (mouse)92558748559587581Mouse
11532696Sluc39c_msusceptibility to lung cancer 39c (mouse)92558748559587581Mouse
11532694Sluc39a_msusceptibility to lung cancer 39a (mouse)92558748559587581Mouse
11532695Sluc39b_msusceptibility to lung cancer 39b (mouse)92558748559587581Mouse
10043987Stheal13_msoft tissue heal 13 (mouse)Not determined92679642160796552Mouse
1300932Hdlq17_mHDL QTL 17 (mouse)Not determined92679642160796552Mouse
10043867Mtbcq9_mmultiple trait body composition QTL 9 (mouse)Not determined92679642160796552Mouse
10043878Adip20_madiposity 20 (mouse)Not determined92725119461251323Mouse
14700787Ncdq1_mnevus cell density QTL 1 (mouse)92811129636111296Mouse
1301000Obq5_mobesity QTL 5 (mouse)Not determined92850333341799326Mouse
10043847Hdlq89_mHDL QTL 89 (mouse)Not determined92929292963293072Mouse
1301782Chol11_mcholesterol 11 (mouse)Not determined92929292963293072Mouse
1301365Ap5q_malcohol preference 5 QTL (mouse)Not determined93005316464053277Mouse
1558949Igan3_mIgA nephropathy 3 (mouse)Not determined93041469440565914Mouse
1357746Vtbt7_mvertebral trabecular bone trait 7 (mouse)Not determined93073991564740021Mouse
4142455Elnv_mepilepsy naive (mouse)Not determined93127155837306370Mouse
1302180Actd4_mactivity-distance traveled 4 (mouse)Not determined93243456366434857Mouse
4141148Cq5_mcholesterol QTL 5 (mouse)Not determined93245242166452546Mouse
1301692Hts_mhypothermia sensitivity (mouse)Not determined93251117266511421Mouse
4141323Ptnu3_mproteinuria 3 (mouse)Not determined93288970266889836Mouse
1357709Si5lq3_mserum IGFBP-5 level QTL 3 (mouse)Not determined93311102567111140Mouse
1558872Ibdq1_minflammatory bowel disease QTL 1 (mouse)Not determined93397884073439255Mouse
1357682Phdlc1_mplasma HDL cholesterol 1 (mouse)Not determined93410461942764866Mouse
1300868Tlf_mT lymphocyte fraction (mouse)Not determined93483774837306370Mouse
1301252Etohc3_methanol consumption 3 (mouse)Not determined93503447869034599Mouse
1301972Cocrb8_mcocaine related behavior 8 (mouse)Not determined93503447869034599Mouse
1558968Tbdr1_mbody temperature response to dietary restriction, QTL 1 (mouse)Not determined93503447869034599Mouse

Markers in Region
AU014965  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38935,850,317 - 35,850,518UniSTSGRCm38
GRCm38936,136,011 - 36,136,210UniSTSGRCm38
MGSCv37935,657,902 - 35,658,103UniSTSGRCm37
MGSCv37935,943,596 - 35,943,795UniSTSGRCm37
Celera933,352,292 - 33,352,491UniSTS
Celera933,088,598 - 33,088,799UniSTS
Cytogenetic Map9A4UniSTS
Whitehead/MRC_RH9361.35UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000168452   ⟹   ENSMUSP00000125855
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl936,031,116 - 36,040,075 (-)Ensembl
GRCm38.p6 Ensembl936,119,934 - 36,128,779 (-)Ensembl
RefSeq Acc Id: NM_001167587   ⟹   NP_001161059
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39936,031,230 - 36,040,075 (-)NCBI
GRCm38936,119,934 - 36,128,779 (-)NCBI
MGSCv37935,927,519 - 35,936,364 (-)RGD
Celera933,339,156 - 33,344,985 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006510490   ⟹   XP_006510553
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39936,030,660 - 36,040,141 (-)NCBI
GRCm38936,119,364 - 36,128,845 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001161059 (Get FASTA)   NCBI Sequence Viewer  
  XP_006510553 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL25406 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000125855
  ENSMUSP00000125855.2
Reference Protein Sequences
RefSeq Acc Id: NP_001161059   ⟸   NM_001167587
- Peptide Label: precursor
- UniProtKB: G5E8W5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006510553   ⟸   XM_006510490
- Peptide Label: isoform X1
- UniProtKB: G5E8W5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000125855   ⟸   ENSMUST00000168452

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G5E8W5-F1-model_v2 AlphaFold G5E8W5 1-102 view protein structure

Promoters
RGD ID:8669190
Promoter ID:EPDNEW_M12626
Type:initiation region
Name:Gm5916_1
Description:Mus musculus predicted gene 5916 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38936,128,755 - 36,128,815EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3643162 AgrOrtholog
Ensembl Genes ENSMUSG00000091411 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000168452 ENTREZGENE
  ENSMUST00000168452.3 UniProtKB/TrEMBL
KEGG Report mmu:546123 UniProtKB/TrEMBL
MGD MGI:3643162 ENTREZGENE
NCBI Gene 546123 ENTREZGENE
PhenoGen Gm5916 PhenoGen
UniProt G5E8W5 ENTREZGENE, UniProtKB/TrEMBL