7420426K07Rik (RIKEN cDNA 7420426K07 gene) - Rat Genome Database
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Gene: 7420426K07Rik (RIKEN cDNA 7420426K07 gene) Mus musculus
Analyze
Symbol: 7420426K07Rik
Name: RIKEN cDNA 7420426K07 gene
RGD ID: 1622617
MGI Page MGI
Description: Is expressed in face. Orthologous to human C3orf56 (chromosome 3 open reading frame 56).
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: hypothetical protein LOC546157; uncharacterized protein LOC546157
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39998,785,172 - 98,786,675 (+)NCBIGRCm39mm39
GRCm38998,903,119 - 98,904,622 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl998,903,119 - 98,904,622 (+)EnsemblGRCm38mm10GRCm38
MGSCv37998,803,538 - 98,805,041 (+)NCBIGRCm37mm9NCBIm37
MGSCv36998,712,471 - 98,713,974 (+)NCBImm8
Celera998,441,895 - 98,443,398 (+)NCBICelera
Cytogenetic Map9E3.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24565867  


Genomics

Comparative Map Data
7420426K07Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39998,785,172 - 98,786,675 (+)NCBIGRCm39mm39
GRCm38998,903,119 - 98,904,622 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl998,903,119 - 98,904,622 (+)EnsemblGRCm38mm10GRCm38
MGSCv37998,803,538 - 98,805,041 (+)NCBIGRCm37mm9NCBIm37
MGSCv36998,712,471 - 98,713,974 (+)NCBImm8
Celera998,441,895 - 98,443,398 (+)NCBICelera
Cytogenetic Map9E3.3NCBI
PRR23D1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl87,539,628 - 7,542,450 (+)EnsemblGRCh38hg38GRCh38
GRCh3887,536,671 - 7,542,450 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3787,394,937 - 7,399,839 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3687,384,560 - 7,391,754 (+)NCBINCBI36hg18NCBI36
Cytogenetic Map8p23.1NCBI
HuRef86,947,848 - 6,950,897 (+)NCBIHuRef
CHM1_187,227,821 - 7,230,644 (-)NCBICHM1_1


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141224Dxmod_mdoxorubicin nephropathy modifier (mouse)Not determined49541121101528921Mouse
1301241Renf1_mrenal failure 1 (mouse)Not determined95212317899910428Mouse
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959990000109260000Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
1301636Lith5_mlithogenic gene 5 (mouse)Not determined966207024100207122Mouse
10045638Heal29_mwound healing/regeneration 29 (mouse)Not determined967124167101124167Mouse
1357610Vtbt8_mvertebral trabecular bone trait 8 (mouse)Not determined968897510102897652Mouse
1301924Bmd10_mbone mineral density 10 (mouse)Not determined968897510102897652Mouse
1301302Pas4_mpulmonary adenoma susceptibility 4 (mouse)Not determined969239845103239920Mouse
1301621Hpic1_mhaloperidol-induced catalepsy 1 (mouse)Not determined969546513103546645Mouse
1301573Etohcta8_methanol conditioned taste aversion 8 (mouse)Not determined972977005106977152Mouse
10054068El8_mepilepsy 8 (mouse)Not determined972977005106977152Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974368177108368325Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975775364114474379Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975775364114474379Mouse
1301869Tbbmd4_mtotal body bone mineral density 4 (mouse)Not determined976117105101528921Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976535936110536130Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978640645112640755Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979397810113397888Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981798268115798392Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982910333116910428Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982910333116910428Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982910333116910428Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984528818118528921Mouse
10412180Msam3_mmuscle, skeletal, activity measure 3 (mouse)Not determined985897510108641186Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986230401120230530Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986239845120289624Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986748483120748483Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989977005118938021Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
11081166Psl5_mpromotion susceptibility QTL 5 (mouse)994981301112872929Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:225
Count of miRNA genes:198
Interacting mature miRNAs:206
Transcripts:ENSMUST00000098460
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000098460   ⟹   ENSMUSP00000096060
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl998,903,119 - 98,904,622 (+)Ensembl
RefSeq Acc Id: NM_001033983   ⟹   NP_001029155
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39998,785,172 - 98,786,675 (+)NCBI
GRCm38998,903,119 - 98,904,622 (+)ENTREZGENE
MGSCv37998,803,538 - 98,805,041 (+)RGD
Celera998,441,895 - 98,443,398 (+)RGD
cM Map9 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001029155 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAE22697 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001029155   ⟸   NM_001033983
- UniProtKB: Q3UX66 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000096060   ⟸   ENSMUST00000098460


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3588253 AgrOrtholog
Ensembl Genes ENSMUSG00000074123 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000096060 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000098460 ENTREZGENE, UniProtKB/TrEMBL
InterPro UPF0572 UniProtKB/TrEMBL
KEGG Report mmu:546157 UniProtKB/TrEMBL
MGD MGI:3588253 ENTREZGENE
NCBI Gene 546157 ENTREZGENE
Pfam DUF2476 UniProtKB/TrEMBL
PhenoGen 7420426K07Rik PhenoGen
UniGene Mm.380145 ENTREZGENE
UniProt Q3UX66 ENTREZGENE, UniProtKB/TrEMBL