Gm6038 (predicted pseudogene 6038) - Rat Genome Database

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Gene: Gm6038 (predicted pseudogene 6038) Mus musculus
Analyze
Symbol: Gm6038
Name: predicted pseudogene 6038
RGD ID: 1622607
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG547447; melanoma-associated antigen 10-like; predicted gene, EG547447
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X69,553,139 - 69,557,869 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX69,556,654 - 69,557,601 (+)EnsemblGRCm39 Ensembl
GRCm38X70,509,533 - 70,514,263 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX70,513,048 - 70,513,995 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X67,766,223 - 67,767,146 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X66,773,604 - 66,774,527 (+)NCBIMGSCv36mm8
CeleraX61,488,920 - 61,489,843 (+)NCBICelera
Cytogenetic MapXA7.2NCBI
cM MapX36.05NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm6038
94 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:184
Count of miRNA genes:115
Interacting mature miRNAs:118
Transcripts:ENSMUST00000154310, ENSMUST00000164701
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
13208567Bmiq12_mbody mass index QTL 12 (mouse)X3526365377043606Mouse
1301009Pbwg7_mpostnatal body weight growth 7 (mouse)Not determinedX3911371473113814Mouse
4141565Pbwg21_mpostnatal body weight growth 21 (mouse)Not determinedX3911371473113814Mouse
1300794Spha2_msperm head anomaly 2 (mouse)Not determinedX3992149886260137Mouse
4142200Rtwq1_mreduced testis weight QTL 1 (mouse)Not determined4147706075477203Mouse
1301278Bdln1_mbody length 1 (mouse)Not determinedX4170210675702218Mouse
1300702Fcsa4_mfemoral cross-sectional area 4 (mouse)Not determinedX4602744480027567Mouse
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined47179121129764756Mouse
1301351Obq6_mobesity QTL 6 (mouse)Not determinedX5077237570434751Mouse
25314311Syncl3_msynaptonemal complex length 3 (mouse)X5198887789743606Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
10412108Desp5_mdespair 5 (mouse)Not determinedX5472235188722351Mouse
13464140Hdlq108_mHDL QTL 108 (mouse)X5777196091771960Mouse
12880401Emlq3_memotional learning QTL 3 (mouse)X5799218370090431Mouse
25314316Mlh1fc3_mMLH1 foci count 3 (mouse)X6134360689843606Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000154310
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX69,556,654 - 69,557,601 (+)Ensembl
GRCm38.p6 EnsemblX70,513,048 - 70,513,995 (+)Ensembl
RefSeq Acc Id: XM_006528356   ⟹   XP_006528419
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X70,509,533 - 70,514,263 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000087325 Ensembl
MGD MGI:3643766 ENTREZGENE
NCBI Gene 547447 ENTREZGENE
PhenoGen Gm6038 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Gm6038  predicted pseudogene 6038  Gm6038  predicted gene 6038  Symbol and/or name change 5135510 APPROVED