Vmn2r6 (vomeronasal 2, receptor 6) - Rat Genome Database

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Gene: Vmn2r6 (vomeronasal 2, receptor 6) Mus musculus
Analyze
No known orthologs.
Symbol: Vmn2r6
Name: vomeronasal 2, receptor 6
RGD ID: 1622473
MGI Page MGI
Description: Predicted to enable G protein-coupled receptor activity and olfactory receptor activity.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: EG620718; EG667069; vomeronasal receptor Vmn2r6
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39364,444,916 - 64,472,855 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl364,438,731 - 64,473,251 (-)EnsemblGRCm39 Ensembl
GRCm38364,537,501 - 64,565,434 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl364,531,310 - 64,565,830 (-)EnsemblGRCm38mm10GRCm38
MGSCv37364,341,483 - 64,363,740 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36364,625,944 - 64,682,294 (-)NCBIMGSCv36mm8
Celera364,696,588 - 64,715,836 (-)NCBICelera
Cytogenetic Map3E1NCBI
cM Map330.15NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:17382427   PMID:21873635  


Genomics

Variants

.
Variants in Vmn2r6
397 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:166
Count of miRNA genes:81
Interacting mature miRNAs:83
Transcripts:ENSMUST00000165012, ENSMUST00000176481
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
1558925Hivan1_mHIV-associated nephropathy 1 (mouse)Not determined3758617468716946Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
4141116Lgaq4_mlate growth adjusted QTL 4 (mouse)Not determined1024922183184946Mouse
4141255W10q3_mweight 10 weeks QTL 3 (mouse)Not determined1024922183184946Mouse
4141563Lgq3_mlate growth QTL 3 (mouse)Not determined1024922183184946Mouse
39128206Lwq18_mliver weight QTL 18 (mouse)31024922183184946Mouse
1357584Splq6_mspleen weight QTL 6 (mouse)Not determined31024922183184946Mouse
1357440Hrtpq1_mheart weight percentage QTL 1 (mouse)Not determined31024922183184946Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1300961Bh4p_mbar holding four paws (mouse)Not determined33183785465837997Mouse
10412073Ssen2_msuseptibility to Sendai virus 2 (mouse)Not determined33353546567535615Mouse
9587784Afw13_mabdominal fat weight QTL 13 (mouse)Not determined33375204567752228Mouse
10043882Bwtq13_mbody weight QTL 13 (mouse)Not determined33375204567752228Mouse
15039332Nmrs6_mNAFLD-associated magnetic resonance shift 6 (mouse)33417074168170741Mouse
15039336Nmrs2_mNAFLD-associated magnetic resonance shift 2 (mouse)33457610368576103Mouse
18337272Bmd46_mbone mineral density 46, males (mouse)33540742169407421Mouse
14746977Manh53_mmandible shape 53 (mouse)33592528069925280Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
1300587Aod2_mautoimmune ovarian dysgenesis 2 (mouse)Not determined33717974268716946Mouse
11041901Lmr11b_mleishmaniasis resistance 11b (mouse)33970410273704231Mouse
11039513Ltpr3a_mLeishmania tropica response 3a (mouse)33970410273704231Mouse
1301585Cd4ts1_mCD4 T cell subset 1 (mouse)Not determined33970410273704231Mouse
10755516Amzn1_manatomical modifier of Zfp423 1 (mouse)33970410273704231Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
26884389Skwq10_mskull length QTL 10, 16 week (mouse)34395443565307421Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)343954435101607316Mouse
4141079Ath23_matherosclerosis 23 (mouse)Not determined4935758183357581Mouse
1300895Hdl5_mHDL level 5 (mouse)Not determined34949500583495118Mouse
1301824Susp_msuppressor of superoxide production (mouse)Not determined34949500583495118Mouse
26884378Skwq6_mskull length QTL 6, 10 week (mouse)351907421102307316Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
1357585Manln3_mmandible length 3 (mouse)Not determined35262550986625745Mouse
1301917Tshp4_mtooth shape 4 (mouse)Not determined35262550986625745Mouse
1300593Skull4_mskull morphology 4 (mouse)Not determined35262550986625745Mouse
13464139Nhdlq17_mnon-HDL QTL 17 (mouse)35292318386923183Mouse
11039519Ltpr3_mLeishmania tropica response 3 (mouse)356704102100464137Mouse
12880419V125Dq4_mvitamin D active form serum level QTL 4 (mouse)35890730792907307Mouse
4141294Bmd24_mbone mineral density 24 (mouse)Not determined36174006195740241Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001385213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC113321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000165012   ⟹   ENSMUSP00000131831
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl364,444,982 - 64,467,239 (-)Ensembl
GRCm38.p6 Ensembl364,537,561 - 64,559,818 (-)Ensembl
RefSeq Acc Id: ENSMUST00000176481   ⟹   ENSMUSP00000135148
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl364,438,731 - 64,473,251 (-)Ensembl
GRCm38.p6 Ensembl364,531,310 - 64,565,830 (-)Ensembl
RefSeq Acc Id: NM_001385213   ⟹   NP_001372142
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39364,444,916 - 64,472,855 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001372142 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000131831.2
  ENSMUSP00000135148
  ENSMUSP00000135148.2
Reference Protein Sequences
RefSeq Acc Id: ENSMUSP00000131831   ⟸   ENSMUST00000165012
RefSeq Acc Id: ENSMUSP00000135148   ⟸   ENSMUST00000176481
RefSeq Acc Id: NP_001372142   ⟸   NM_001385213
- Peptide Label: precursor
- UniProtKB: H3BK29 (UniProtKB/TrEMBL)
Protein Domains
G-protein coupled receptors family 3 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-H3BK29-F1-model_v2 AlphaFold H3BK29 1-913 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3649068 AgrOrtholog
Ensembl Genes ENSMUSG00000090581 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000165012.3 UniProtKB/TrEMBL
  ENSMUST00000176481 ENTREZGENE
  ENSMUST00000176481.9 UniProtKB/TrEMBL
Gene3D-CATH 2.10.50.30 UniProtKB/TrEMBL
  3.40.50.2300 UniProtKB/TrEMBL
InterPro ANF_lig-bd_rcpt UniProtKB/TrEMBL
  GPCR_3 UniProtKB/TrEMBL
  GPCR_3_9-Cys_dom UniProtKB/TrEMBL
  GPCR_3_9-Cys_sf UniProtKB/TrEMBL
  GPCR_3_C UniProtKB/TrEMBL
  GPCR_3_Ca_sens_rcpt-rel UniProtKB/TrEMBL
  Peripla_BP_I UniProtKB/TrEMBL
MGD MGI:3649068 ENTREZGENE
NCBI Gene 667069 ENTREZGENE
PANTHER PTHR24061 UniProtKB/TrEMBL
  VOMERONASAL 2 RECEPTOR 128-RELATED UniProtKB/TrEMBL
Pfam 7tm_3 UniProtKB/TrEMBL
  ANF_receptor UniProtKB/TrEMBL
  NCD3G UniProtKB/TrEMBL
PhenoGen Vmn2r6 PhenoGen
PRINTS CASENSINGR UniProtKB/TrEMBL
  GPCRMGR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F3_4 UniProtKB/TrEMBL
Superfamily-SCOP SSF53822 UniProtKB/TrEMBL
UniProt H3BK29 ENTREZGENE, UniProtKB/TrEMBL
  L7N478_MOUSE UniProtKB/TrEMBL