Gdap10 (ganglioside-induced differentiation-associated-protein 10) - Rat Genome Database

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Gene: Gdap10 (ganglioside-induced differentiation-associated-protein 10) Mus musculus
Analyze
Symbol: Gdap10
Name: ganglioside-induced differentiation-associated-protein 10
RGD ID: 1622401
MGI Page MGI
Description: Acts upstream of or within response to bacterium. Is expressed in brain and embryo.
Type: ncrna
RefSeq Status: PREDICTED
Previously known as: Gdap; Gdap-ps; MGC60602
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391232,874,115 - 32,876,918 (+)NCBIGRCm39GRCm39mm39
GRCm381232,824,116 - 32,826,919 (+)NCBIGRCm38GRCm38mm10GRCm38
MGSCv371233,508,500 - 33,510,095 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361230,663,327 - 30,666,829 (+)NCBIMGSCv36mm8
Celera1234,268,080 - 34,269,675 (+)NCBICelera
Cytogenetic Map12A3NCBI
cM Map1213.75NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10217254   PMID:12477932   PMID:21267068   PMID:23012479   PMID:27855657  


Genomics

Variants

.
Variants in Gdap10
113 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301207Circp1_mcircadian photosensitivity 1 (mouse)Not determined12133430339Mouse
4141660Nbwa1_mNZB and NZW autoimmunity 1 (mouse)Not determined1234013434340302Mouse
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
1301163Eae16_msusceptibility to experimental allergic encephalomyelitis 16 (mouse)Not determined12772315841723301Mouse
13208568Bmiq11_mbody mass index QTL 11 (mouse)12805000040049999Mouse
1301037Cd4ts5_mCD4 T cell subset 5 (mouse)Not determined12835244442352581Mouse
1301723Fcsa7_mfemoral cross-sectional area 7 (mouse)Not determined12949100443491112Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
14746972Manh72_mmandible shape 72 (mouse)121061528144615281Mouse
10401249Bglu15_mblood glucose level 15 (mouse)Not determined121062064244620809Mouse
13524843Ppiq8_mprepulse inhibition QTL 8 (mouse)121104319450945796Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
4141516slwr_mslowlearner (mouse)Not determined1239247546392614Mouse
13524839Ppiq10_mprepulse inhibition QTL 10 (mouse)121304319554945798Mouse
10043977Obq34_mobesity QTL 34 (mouse)Not determined121514733149147331Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
26884413Bzwq9_mbi-zygomatic width QTL 9, 10 week (mouse)121615000147746783Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
15039339Nmrs29_mNAFLD-associated magnetic resonance shift 29 (mouse)121782585251825852Mouse
10043848Hdlq90_mHDL QTL 90 (mouse)Not determined121783993951840081Mouse
1300870Ath18_matherosclerosis 18 (mouse)Not determined121825996652260067Mouse
12904956Edlmmq10_mextensor digitorum longus muscle mass QTL 10 (mouse)121973983353739833Mouse
1302172Skts5_mskin tumor susceptibility 5 (mouse)Not determined122214886656149016Mouse
1301989Hdlq18_mHDL QTL 18 (mouse)Not determined122916068563160884Mouse
1300636Gct2_mgranulosa cell tumorigenesis 2 (mouse)Not determined122916068563160884Mouse
4141843Moen3_mmodifier of engrailed QTL 3 (mouse)Not determined122980158463801733Mouse
14747008Mancz10_mmandible centroid size 10 (mouse)122986352263863522Mouse


Expression


Sequence


RefSeq Acc Id: NR_045032
RefSeq Status: PREDICTED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391232,874,115 - 32,876,918 (+)NCBI
GRCm381232,824,116 - 32,826,919 (+)ENTREZGENE
Celera1234,268,561 - 34,271,362 (+)ENTREZGENE
cM Map12 ENTREZGENE
Sequence:
Protein Sequences
GenBank Protein AAH52902 (Get FASTA)   NCBI Sequence Viewer  
  CAA76896 (Get FASTA)   NCBI Sequence Viewer  


Additional Information

Database Acc Id Source(s)
MGD MGI:1338008 ENTREZGENE
NCBI Gene 100504486 ENTREZGENE
PhenoGen Gdap10 PhenoGen
RNAcentral URS0000D77F65 RNACentral
UniProt O88744_MOUSE UniProtKB/TrEMBL
  Q7TMV0_MOUSE UniProtKB/TrEMBL