1810030O07Rik (RIKEN cDNA 1810030O07 gene)

Gene: 1810030O07Rik (RIKEN cDNA 1810030O07 gene) Mus musculus

Analyze

Symbol:

1810030O07Rik

Name:

RIKEN cDNA 1810030O07 gene

RGD ID:

1622300

MGI Page

MGI

Description:

Orthologous to human CXorf38 (chromosome X open reading frame 38).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

hypothetical protein LOC69155; Novel transcript; uncharacterized protein CXorf38 homolog

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	12,521,118 - 12,540,175 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	12,521,118 - 12,539,907 (-)	Ensembl		GRCm39 Ensembl
GRCm38	X	12,654,879 - 12,673,936 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	12,654,879 - 12,673,668 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	12,232,010 - 12,250,672 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	11,811,843 - 11,830,505 (-)	NCBI		MGSCv36	mm8
Celera	X	10,348,775 - 10,367,528 (-)	NCBI		Celera
Cytogenetic Map	X	A1.1	NCBI
cM Map	X	7.5	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

genetic disease (ISO)

Neurodevelopmental Disorders (ISO)

ornithine carbamoyltransferase deficiency (ISO)

syndromic X-linked intellectual disability Hedera type (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

syndromic X-linked intellectual disability Najm type (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

6-propyl-2-thiouracil (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

bisphenol A (ISO)

bisphenol F (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

dexamethasone (ISO)

FR900359 (ISO)

fulvestrant (ISO)

furan (ISO)

indometacin (ISO)

methimazole (ISO)

nickel atom (ISO)

nickel sulfate (ISO)

potassium chromate (ISO)

resorcinol (ISO)

sodium arsenite (ISO)

temozolomide (ISO)

thimerosal (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Cellular Component

cellular_component (ND)

Molecular Function

molecular_function (ND)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10349636	PMID:10922068	PMID:11042159	PMID:11076861	PMID:11125038	PMID:11217851	PMID:12466851	PMID:12477932	PMID:15782199	PMID:16141072	PMID:16141073	PMID:21267068
PMID:21677750

Genomics

Comparative Map Data

1810030O07Rik
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	12,521,118 - 12,540,175 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	12,521,118 - 12,539,907 (-)	Ensembl		GRCm39 Ensembl
GRCm38	X	12,654,879 - 12,673,936 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	12,654,879 - 12,673,668 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	12,232,010 - 12,250,672 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	11,811,843 - 11,830,505 (-)	NCBI		MGSCv36	mm8
Celera	X	10,348,775 - 10,367,528 (-)	NCBI		Celera
Cytogenetic Map	X	A1.1	NCBI
cM Map	X	7.5	NCBI

CXorf38
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	40,626,921 - 40,647,561 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	40,626,921 - 40,647,561 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	40,486,173 - 40,506,813 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	40,373,984 - 40,391,721 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	X	40,245,297 - 40,263,031	NCBI
Celera	X	44,626,483 - 44,646,806 (-)	NCBI		Celera
Cytogenetic Map	X	p11.4	NCBI
HuRef	X	38,197,224 - 38,236,929 (-)	NCBI		HuRef
CHM1_1	X	40,518,647 - 40,538,963 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	X	40,028,466 - 40,048,779 (-)	NCBI		T2T-CHM13v2.0

Cxhxorf38
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	12,800,935 - 12,823,632 (+)	NCBI		GRCr8
mRatBN7.2	X	10,128,070 - 10,150,904 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	10,129,657 - 10,150,900 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	10,311,146 - 10,332,257 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	13,808,307 - 13,829,420 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	10,077,428 - 10,098,584 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	11,082,668 - 11,105,588 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	11,084,317 - 11,105,588 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	11,881,213 - 11,904,145 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	22,209,323 - 22,230,716 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	X	10,654,376 - 10,675,615 (+)	NCBI		Celera
Cytogenetic Map	X	q12	NCBI

CUNHXorf38
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955565	1,963,196 - 1,983,171 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955565	1,963,195 - 1,983,171 (+)	NCBI	ChiLan1.0	ChiLan1.0

CXHXorf38
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	42,273,296 - 42,293,669 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	42,276,672 - 42,296,970 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	33,074,757 - 33,095,049 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	40,780,832 - 40,798,628 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	40,777,829 - 40,798,628 (-)	Ensembl	panpan1.1		panPan2

CXHXorf38
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	35,101,755 - 35,121,453 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	35,106,819 - 35,121,385 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	22,450,012 - 22,469,735 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	35,150,143 - 35,169,858 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	35,152,854 - 35,169,780 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	35,229,210 - 35,248,925 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	35,201,904 - 35,221,627 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	35,244,707 - 35,264,423 (-)	NCBI		UU_Cfam_GSD_1.0

CXHXorf38
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	27,420,047 - 27,437,710 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936502	7,259,928 - 7,278,725 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936502	7,260,094 - 7,278,416 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CXHXorf38
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	36,328,653 - 36,351,826 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	36,330,684 - 36,351,903 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	40,428,897 - 40,450,087 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CUNHXorf38
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	37,788,826 - 37,809,922 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	37,788,702 - 37,809,007 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666076	2,986,612 - 3,006,929 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CUNHXorf38
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624762	14,906,980 - 14,924,250 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624762	14,906,973 - 14,927,869 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in 1810030O07Rik
513 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	638
Count of miRNA genes:	397
Interacting mature miRNAs:	484
Transcripts:	ENSMUST00000060108
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1302195	Pbwg10_m	postnatal body weight growth 10 (mouse)			Not determined		X	1	26202173	Mouse
1357433	Dbts2_m	diabetes 2 (mouse)			Not determined		X	7226295	150107038	Mouse
1301551	Spha1_m	sperm head anomaly 1 (mouse)			Not determined		X	10266225	39921652	Mouse
13208553	Wght11_m	weight 11 (mouse)					X	11866239	59045360	Mouse
13208557	Lgth13_m	body length 13 (mouse)					X	11866239	59045360	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_175141	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006527698	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AK007661	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK078166	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK085228	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK146041	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK169085	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK178929	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK181326	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK181549	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK183608	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK195648	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK206619	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK206745	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK209275	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK211118	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK212765	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK213814	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK216785	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC038642	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC051146	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC137660	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BX000537	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BX511770	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466584	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000060108 ⟹ ENSMUSP00000059095

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	X	12,521,118 - 12,539,907 (-)	Ensembl
GRCm38.p6 Ensembl	X	12,654,879 - 12,673,668 (-)	Ensembl

RefSeq Acc Id:

NM_175141 ⟹ NP_780350

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	X	12,521,118 - 12,539,878 (-)	NCBI
GRCm38	X	12,654,879 - 12,673,639 (-)	NCBI
MGSCv37	X	12,232,010 - 12,250,672 (-)	RGD
Celera	X	10,348,775 - 10,367,528 (-)	RGD
cM Map	X		ENTREZGENE

Sequence:

show sequence

GTCTGGACGTTTTGGGGGTTGGGCTACGCCTGCGCTGCGTGGGAGCATCCCAGGGTGCTGCGCG
TGCTTACCGCCGGCCCCGCCTTCAGGAGTAAGACATGGTGGTGTCGGAGCTGGCAGCCCGCCTC
AATTGCGCCGAGTACAAAAACTGGGTGAAAGCAGGACACTGCCTGCTGCTGCTGCGCAGCTGCC
TGCAAGGTTTCATAGACCGTGAAGTGCTCTCCTTTCACCGTGGACTGCTGGCTGCAGTCCCTGG
CCTTGGACCCCATGCTACCTGCCGCGGCGGTTCCCGGTGCAGCCCGCGCGCTCGCCAGTTTCAG
CCTCAGTGTCAGGTATGCGCAGAGTGGAAACACGAGATCTTGAGGCATCACATCAACAGAAATG
GAGACGTGCACTGGGGAAATTGCAAGCCAGGCCTCTGGCCCAAAGACCCTTGGGAGGTAGCCAA
GGCCTTCATGCCCCGAGGACTGGCAGACAAACGAGGACCTGAGGAATGTGATGCAGTTGCTCTT
TTAAGTCTCATCAACTCCTGTGATCACTTTGTGGTTGACCGGAAGAAGGTCACAGAGGTGATAA
AGTGTCGAAATGAGATAATGCACTCTTCAGAGATGAAAGTTTCATCTACCTGGCTTCGAGATTT
TCAGATCAAGATCCAAAATTTTCTGAACGAATTCAAGAATATCCCAGAGATTGTAGCAGTATAT
TCCAGAATAGAACAGCTGTTGACATCTGACTGGGCTGTTCACATTCCTGAGGAAGATGAACGAG
ATGGGTGTGAATTTGAAATAGGAAGTTACTTGAGTGTGAGCCAAATCCACGAAATTGAAATAGA
ATTGCTGAAGGAAAAACTGCAAGAAATGTATCTTCAAGCAGCAGAAGAAGAGATGTTGCCAGAA
GAGATCTCAAATCAACTGGATGTGGTGAAAGGTTTTCTGGGAAGCAACACAGATCTTAGAAACG
GCCTTACAGAAGACTTGCAGAAGCTAGAGAGCCTCCATCTACAGCATCAAAAACAAACTTCAAA
GGATGCCGGTAGACAGACACCTGAAAGGAAGGCTTGAGGGTCTTTGCCATTAGACTGCTTCATG
TCACCTCTGGACGTTACTATGTTCCCCGAACTACCTAGAAGAAACGCTCCATGCCAAGGCTCGG
CAAAGATGAAGTCACTCCCTCACCTGGCCAGCTGCCTGCCCAACAGGGATCCTCCAGAGAGGGG
GTAGCAATAGAAACTGGATTTGGCATGTATTTCAACTTTATAACCCAAATGAATACAAATGTGC
TTTCAGCTTGCTTATTTAATCTTCCAGGTTGCTGTTTAGTTTTCAGTGTTATGGTTTCTTTCTC
CCTTCATTTGTGAAAGTCCTTGAGAAGACTTCAAGCAAAGCAAGATTTTGCATTTATTTTGCCA
CTTTGCCATAGGAAAAAAAATCAATTCCCTTCTAGATCTGAAGTACAAAACATAGAATGTTGAT
GCACTAACCCACAAAGACCTGGTTTCTAACTGTAGGAAGTTTGAGATCCTAACCTTTCATTTTA
TTCTTGTCTAGTTATTTTGTCCTTATCAATTCAACACACACCAAGTGTCAAACCTGTGCCAGAC
ATTGAAACGAGTGGTGAAATCCAGTCTTACTACCTTCATCTGCCACTCGGACAGTTCAGAGGTT
CTGTTCAGAGAACTATACCAGTAACATTACAGTGAATTGAAACAGAAAAGGCAAGACCCTTGTA
TAAAGGGCTCGAAGACAGATGTGCTGAATACAGAGGTAGCGGCCTGTCCCACGTCTCTTCCACA
GAACTGTGCCTGGGTATGTCCGAATGGATGTTCACAAGTTGAGGACCTACTAAATAAGTTGTAG
AACATCTGTACTATGCCACCTGTCTTAGTAAGGGTTCTATTCCTGCACAAACATCGTGACCAAG
AAGCAAGTTGGGGAGGAAAGGGTTTATTCAGCTTACACTTCCATACTGCTGTTCATCACCAAAG
GAAGTCAGGACTGAACTCACACAGGTCAGGAAGCAGGAGCTGATGCAGAGGCCATTGAGAGATC
TTCCTTACTGGCTTGCTTTCCACTGGCTTGCTCAGCCTGCTCTCTTATAGAACCCAAGACTACC
AGCCCAGAGATGGCACCACCCACAATGGACCCTCCACCCTTGACCACTAATTGAGAAAATGCCT
TACAGCTGGATCTCGTGGAGGCATTTCCCCAACTGAAGCTCCCTTCTCAGTGATAACTGCAGCT
GTGTCAACTGACACACAAATCCAGCCAGTCCACCACATAACTATTCTAAAGAATGACCCCATAA
TGAAGTGCAGTCATGGGAATTACCTGTAAGGCATCTAAAGGAAAGAAACGGTTTGAAGGGTGGA
CTGGAGCTCCGTGGTGGGGCGCTTGCCTACCCAGCATGTGTAATACCTTGACTAGATGGCTGTT
CCACTGCCAAAAGCAAATCAATAGAAAAACAAAGTATTGAATAATGATGAGCATGCTATAGTGC
TGTTTGTGTGCTATAGTAACTGAGCTCTGGAAAGGGATGGTCTGCTTTCTAAGCCTTTCTTCTA
TATTATGTCTCTAAGAGGAATTGGGGCTGTGGGAGCAGTCAGAGGAATTTAGCTTTTCTGCTTT
GTATATTCTTTTTTATAATAAACATGCATCTGTGTATTTTGAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006527698 ⟹ XP_006527761

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	X	12,521,118 - 12,540,175 (-)	NCBI
GRCm38	X	12,654,879 - 12,673,936 (-)	NCBI

Sequence:

show sequence

GGGATGAGTTAATTTTGTAGAATTGCACAATGCAAGGAACATGTCATTCGAGAAACACACCTTG
AGCATTCCTCTTTACAATAAAAAGGTCAGCACATCAGGAGGGGATCAGGTTGGTTAGAGGGTTG
GCAGGGTATTCAGGAATAAAAATTAAAGCTTTAAAAGGATTAGTCTAAATGTTCCATGTCCACA
AACCAAAGCGGTTCCTTTAAGCGGGGGTGGAGCTGCCACTTCCTGGAGCGGAAACAGTGGCCAG
CCTCTAGCCTCTGAAGTGTACACCGCACAGTGACGCTAAACGTCTGGACGTTTTGGGGGTTGGG
CTACGCCTGCGCTGCGTGGGAGCATCCCAGGGTGCTGCGCGTGCTTACCGCCGGCCCCGCCTTC
AGGAGTAAGACATGGTGGTGTCGGAGCTGGCAGCCCGCCTCAATTGCGCCGAGTACAAAAACTG
GGTGAAAGCAGGACACTGCCTGCTGCTGCTGCGCAGCTGCCTGCAAGGTTTCATAGACCGTGAA
GTGCTCTCCTTTCACCGTGGACTGCTGGCTGCAGTCCCTGGCCTTGGACCCCATGCTACCTGCC
GCGGCGGTTCCCGGTGCAGCCCGCGCGCTCGCCAGTTTCAGCCTCAGTGTCAGGTATGCGCAGA
GTGGAAACACGAGATCTTGAGGCATCACATCAACAGAAATGGAGACGTGCACTGGGGAAATTGC
AAGCCAGGCCTCTGGCCCAAAGACCCTTGGGAGGTAGCCAAGGCCTTCATGCCCCGAGGACTGG
CAGACAAACGAGGACCTGAGGAATGTGATGCAGTTGCTCTTTTAAGTCTCATCAACTCCTGTGA
TCACTTTGTGGTTGACCGGAAGAAGGTCACAGAGGTGATAAAGTGTCGAAATGAGATAATGCAC
TCTTCAGAGATGAAAGTTTCATCTACCTGGCTTCGAGATTTTCAGATCAAGATCCAAAATTTTC
TGAACGAATTCAAGAATATCCCAGAGATTGTAGCAGTATATTCCAGAATAGAACAGCTGTTGAC
ATCTGACTGGGCTGTTCACATTCCTGAGGAAGATGAACGAGATGGGTGTGAATTTGAAATAGGA
AGTTACTTGAGTGTGAGCCAAATCCACGAAATTGAAATAGAATTGCTGAAGGAAAAACTGCAAG
AAATGTATCTTCAAGCAGCAGAAGAAGAGATGTTGCCAGAAGAGATCTCAAATCAACTGGATGT
GGTGAAAGGTTTTCTGGGAAGCAACACAGATCTTAGAAACGGCCTTACAGAAGACTTGCAGAAG
CTAGAGAGCCTCCATCTACAGCATCAAAAACAAACTTCAAAGGATGCCGGTAGACAGACACCTG
AAAGGAAGGCTTGAGGAAAGAGGAAAGTGGTCGTTTTCTACCATTTCCTCTTGAGTGTGGAACT
GTTACTGTGGGCTCGAAGCCAGAGACAGAAGTGAAGCAAGAAGGTTTATGCCTGTGACCTCAAC
TACTCCAAAAGCTGGGCTAGGAGGATCCCAAGTTCTAGGCCAGCCAGGGCAACTTCGGGAGCCC
CTATTTCAAAATGAAAACAAATCGTAAGGAGGTGGATGTGAGGCAGTTATACAACATTTTCTTC
CTCTGCCCGACCCTGGTGTCAGTTCTCAGCTCGCTGTCCCCAAAGACGGAGCAAAGCACGCACA
CTTGCAGCATCTCCTGAGTACTGCAGCTCAGGCTCTGGGACTGTGTGGTTCTGGAAATGCTAGG
AAAGTGCTTGGAAACTTCATTCTTAGCAGTAGTCAAACAAAACTTTCTCTTTCACCGTGCTCAT
AAATTCATTCCCAGCTCTGCTCTTCTTGAACTGTGTGGAAGCCTTGTACTATTGTGTGCAGTGT
TCTGTGGGAGTCAGACTCACTTCCATTTCTTCCTCGGTCTGCTCATTCCCAGGGTCTTTGCCAT
TAGACTGCTTCATGTCACCTCTGGACGTTACTATGTTCCCCGAACTACCTAGAAGAAACGCTCC
ATGCCAAGGCTCGGCAAAGATGAAGTCACTCCCTCACCTGGCCAGCTGCCTGCCCAACAGGGAT
CCTCCAGAGAGGGGGTAGCAATAGAAACTGGATTTGGCATGTATTTCAACTTTATAACCCAAAT
GAATACAAATGTGCTTTCAGCTTGCTTATTTAATCTTCCAGGTTGCTGTTTAGTTTTCAGTGTT
ATGGTTTCTTTCTCCCTTCATTTGTGAAAGTCCTTGAGAAGACTTCAAGCAAAGCAAGATTTTG
CATTTATTTTGCCACTTTGCCATAGGAAAAAAAATCAATTCCCTTCTAGATCTGAAGTACAAAA
CATAGAATGTTGATGCACTAACCCACAAAGACCTGGTTTCTAACTGTAGGAAGTTTGAGATCCT
AACCTTTCATTTTATTCTTGTCTAGTTATTTTGTCCTTATCAATTCAACACACACCAAGTGTCA
AACCTGTGCCAGACATTGAAACGAGTGGTGAAATCCAGTCTTACTACCTTCATCTGCCACTCGG
ACAGTTCAGAGGTTCTGTTCAGAGAACTATACCAGTAACATTACAGTGAATTGAAACAGAAAAG
GCAAGACCCTTGTATAAAGGGCTCGAAGACAGATGTGCTGAATACAGAGGTAGCGGCCTGTCCC
ACGTCTCTTCCACAGAACTGTGCCTGGGTATGTCCGAATGGATGTTCACAAGTTGAGGACCTAC
TAAATAAGTTGTAGAACATCTGTACTATGCCACCTGTCTTAGTAAGGGTTCTATTCCTGCACAA
ACATCGTGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCAGCTTACACTTCCATACTGCT
GTTCATCACCAAAGGAAGTCAGGACTGAACTCACACAGGTCAGGAAGCAGGAGCTGATGCAGAG
GCCATTGAGAGATCTTCCTTACTGGCTTGCTTTCCACTGGCTTGCTCAGCCTGCTCTCTTATAG
AACCCAAGACTACCAGCCCAGAGATGGCACCACCCACAATGGACCCTCCACCCTTGACCACTAA
TTGAGAAAATGCCTTACAGCTGGATCTCGTGGAGGCATTTCCCCAACTGAAGCTCCCTTCTCAG
TGATAACTGCAGCTGTGTCAACTGACACACAAATCCAGCCAGTCCACCACATAACTATTCTAAA
GAATGACCCCATAATGAAGTGCAGTCATGGGAATTACCTGTAAGGCATCTAAAGGAAAGAAACG
GTTTGAAGGGTGGACTGGAGCTCCGTGGTGGGGCGCTTGCCTACCCAGCATGTGTAATACCTTG
ACTAGATGGCTGTTCCACTGCCAAAAGCAAATCAATAGAAAAACAAAGTATTGAATAATGATGA
GCATGCTATAGTGCTGTTTGTGTGCTATAGTAACTGAGCTCTGGAAAGGGATGGTCTGCTTTCT
AAGCCTTTCTTCTATATTATGTCTCTAAGAGGAATTGGGGCTGTGGGAGCAGTCAGAGGAATTT
AGCTTTTCTGCTTTGTATATTCTTTTTTATAATAAACATGCATCTGTGTATTTTGAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_780350	(Get FASTA)	NCBI Sequence Viewer
	XP_006527761	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI37661	(Get FASTA)	NCBI Sequence Viewer
	BAC25180	(Get FASTA)	NCBI Sequence Viewer
	BAC37156	(Get FASTA)	NCBI Sequence Viewer
	BAE26853	(Get FASTA)	NCBI Sequence Viewer
	BAE40869	(Get FASTA)	NCBI Sequence Viewer
	EDL35694	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000059095
	ENSMUSP00000059095.7
GenBank Protein	Q8C5K5	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_780350 ⟸ NM_175141

- UniProtKB:

Q3TFM9 (UniProtKB/Swiss-Prot), Q8CF12 (UniProtKB/Swiss-Prot), Q8C5K5 (UniProtKB/Swiss-Prot), A2BDN9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MVVSELAARLNCAEYKNWVKAGHCLLLLRSCLQGFIDREVLSFHRGLLAAVPGLGPHATCRGGS
RCSPRARQFQPQCQVCAEWKHEILRHHINRNGDVHWGNCKPGLWPKDPWEVAKAFMPRGLADKR
GPEECDAVALLSLINSCDHFVVDRKKVTEVIKCRNEIMHSSEMKVSSTWLRDFQIKIQNFLNEF
KNIPEIVAVYSRIEQLLTSDWAVHIPEEDERDGCEFEIGSYLSVSQIHEIEIELLKEKLQEMYL
QAAEEEMLPEEISNQLDVVKGFLGSNTDLRNGLTEDLQKLESLHLQHQKQTSKDAGRQTPERKA

hide sequence

RefSeq Acc Id:	XP_006527761 ⟸ XM_006527698
- Peptide Label:	isoform X1
- UniProtKB:	Q3TFM9 (UniProtKB/Swiss-Prot), Q8CF12 (UniProtKB/Swiss-Prot), Q8C5K5 (UniProtKB/Swiss-Prot), A2BDN9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVVSELAARLNCAEYKNWVKAGHCLLLLRSCLQGFIDREVLSFHRGLLAAVPGLGPHATCRGGS RCSPRARQFQPQCQVCAEWKHEILRHHINRNGDVHWGNCKPGLWPKDPWEVAKAFMPRGLADKR GPEECDAVALLSLINSCDHFVVDRKKVTEVIKCRNEIMHSSEMKVSSTWLRDFQIKIQNFLNEF KNIPEIVAVYSRIEQLLTSDWAVHIPEEDERDGCEFEIGSYLSVSQIHEIEIELLKEKLQEMYL QAAEEEMLPEEISNQLDVVKGFLGSNTDLRNGLTEDLQKLESLHLQHQKQTSKDAGRQTPERKA hide sequence

RefSeq Acc Id:

ENSMUSP00000059095 ⟸ ENSMUST00000060108

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q8C5K5-F1-model_v2	AlphaFold	Q8C5K5	1-320	view protein structure

Promoters

RGD ID:

13680110

Promoter ID:

EPDNEW_M24204

Type:

initiation region

Name:

1810030O07Rik_1

Description:

Mus musculus RIKEN cDNA 1810030O07 gene , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	X	12,673,574 - 12,673,634	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1916405	AgrOrtholog
Ensembl Genes	ENSMUSG00000044148	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000060108	ENTREZGENE
	ENSMUST00000060108.7	UniProtKB/Swiss-Prot
InterPro	DUF4559	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:69155	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD	MGI:1916405	ENTREZGENE
NCBI Gene	69155	ENTREZGENE
PANTHER	PTHR35083	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RGD1565685 PROTEIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	DUF4559	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	1810030O07Rik	PhenoGen
UniProt	A2BDN9	ENTREZGENE, UniProtKB/TrEMBL
	CX038_MOUSE	UniProtKB/Swiss-Prot
	Q3TFM9	ENTREZGENE
	Q8C5K5	ENTREZGENE
	Q8CF12	ENTREZGENE
UniProt Secondary	Q3TFM9	UniProtKB/Swiss-Prot
	Q8CF12	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar