Chst13 (carbohydrate sulfotransferase 13) - Rat Genome Database
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Gene: Chst13 (carbohydrate sulfotransferase 13) Mus musculus
Analyze
Symbol: Chst13
Name: carbohydrate sulfotransferase 13
RGD ID: 1622266
MGI Page MGI
Description: Is expressed in several structures, including alimentary system; liver; metanephros; nervous system; and skeleton. Orthologous to human CHST13 (carbohydrate sulfotransferase 13); PARTICIPATES IN chondroitin sulfate biosynthetic pathway; INTERACTS WITH 17beta-estradiol; carbon nanotube; folic acid.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 1110067M19Rik; C4ST-; C4ST-3; carbohydrate (chondroitin 4) sulfotransferase 13; Chst1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39690,285,333 - 90,302,167 (-)NCBIGRCm39mm39
GRCm39 Ensembl690,285,331 - 90,302,167 (-)Ensembl
GRCm38690,308,351 - 90,325,185 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl690,308,349 - 90,325,185 (-)EnsemblGRCm38mm10GRCm38
MGSCv37690,258,345 - 90,275,179 (-)NCBIGRCm37mm9NCBIm37
MGSCv36690,273,854 - 90,290,666 (-)NCBImm8
Celera692,202,178 - 92,218,890 (-)NCBICelera
Cytogenetic Map6D1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
COVID-19  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
1. Pipeline to import KEGG annotations from KEGG into RGD
2. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14681479   PMID:15953540   PMID:16141072   PMID:16141073   PMID:18079434   PMID:21873635   PMID:22967998  


Genomics

Comparative Map Data
Chst13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39690,285,333 - 90,302,167 (-)NCBIGRCm39mm39
GRCm39 Ensembl690,285,331 - 90,302,167 (-)Ensembl
GRCm38690,308,351 - 90,325,185 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl690,308,349 - 90,325,185 (-)EnsemblGRCm38mm10GRCm38
MGSCv37690,258,345 - 90,275,179 (-)NCBIGRCm37mm9NCBIm37
MGSCv36690,273,854 - 90,290,666 (-)NCBImm8
Celera692,202,178 - 92,218,890 (-)NCBICelera
Cytogenetic Map6D1NCBI
CHST13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl3126,524,155 - 126,543,291 (+)EnsemblGRCh38hg38GRCh38
GRCh383126,524,155 - 126,543,291 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh373126,242,998 - 126,262,134 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363127,725,866 - 127,744,824 (+)NCBINCBI36hg18NCBI36
Build 343127,725,873 - 127,744,831NCBI
Celera3124,668,006 - 124,686,803 (+)NCBI
Cytogenetic Map3q21.3NCBI
HuRef3123,622,746 - 123,642,308 (+)NCBIHuRef
CHM1_13126,206,151 - 126,225,141 (+)NCBICHM1_1
Chst13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24122,824,712 - 122,837,935 (-)NCBI
Rnor_6.0 Ensembl4122,224,535 - 122,237,754 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.04122,223,846 - 122,244,848 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04186,765,215 - 186,786,132 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44124,571,623 - 124,584,842 (-)NCBIRGSC3.4rn4RGSC3.4
Celera4111,749,499 - 111,762,718 (-)NCBICelera
Cytogenetic Map4q34NCBI
Chst13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542121,770,083 - 21,787,563 (+)NCBIChiLan1.0ChiLan1.0
CHST13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13130,901,424 - 130,908,466 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3130,889,157 - 130,907,762 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03123,569,493 - 123,592,816 (+)NCBIMhudiblu_PPA_v0panPan3
CHST13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.120723,380 - 746,935 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CHST13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1373,350,671 - 73,366,086 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11373,350,670 - 73,366,374 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21380,925,716 - 80,943,006 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CHST13
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12254,471,165 - 54,491,436 (-)NCBI
ChlSab1.1 Ensembl2254,471,879 - 54,490,342 (-)Ensembl
Chst13
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477344,189 - 68,630 (-)NCBI

Position Markers
Chst13  
Mouse AssemblyChrPosition (strand)SourceJBrowse
cM Map6 UniSTS
Chst13  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Chst13  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Chst13  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
10412195Efw_mepididymal fat weight (mouse)Not determined67554435694225955Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67800000097000000Mouse
1301571Arrd1_mage-related retinal degeneration 1 (mouse)Not determined67554435692607450Mouse
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1301262Gasa3_mgastritis type A susceptibility locus 3 (mouse)Not determined689005405123005603Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686806805113544602Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687503360121503555Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
1300674Nidd3n_mnon-insulin-dependent diabetes mellitus 3 in NSY (mouse)Not determined67554435694225955Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681500000102200000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684122513118122513Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:268
Count of miRNA genes:213
Interacting mature miRNAs:233
Transcripts:ENSMUST00000070890
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000070890   ⟹   ENSMUSP00000064897
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl690,308,349 - 90,325,185 (-)Ensembl
RefSeq Acc Id: NM_027928   ⟹   NP_082204
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39690,285,333 - 90,302,167 (-)NCBI
GRCm38690,308,351 - 90,325,185 (-)ENTREZGENE
MGSCv37690,258,345 - 90,275,179 (-)RGD
Celera692,202,178 - 92,218,890 (-)RGD
cM Map6 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_082204 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAB23290 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_082204   ⟸   NM_027928
- Peptide Label: precursor
- UniProtKB: D3Z6E3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000064897   ⟸   ENSMUST00000070890

Promoters
RGD ID:6839078
Promoter ID:MM_KWN:46875
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:NM_027928
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36690,274,891 - 90,275,391 (-)MPROMDB
RGD ID:6890406
Promoter ID:EPDNEW_M8654
Type:multiple initiation site
Name:Chst13_1
Description:Mus musculus carbohydrate sulfotransferase 13 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38690,325,220 - 90,325,280EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1919047 AgrOrtholog
Ensembl Genes ENSMUSG00000056643 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000064897 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000070890 ENTREZGENE, UniProtKB/TrEMBL
InterPro Carb_sulfotransferase-rel UniProtKB/TrEMBL
  Sulfotransferase UniProtKB/TrEMBL
KEGG Report mmu:71797 UniProtKB/TrEMBL
MGD MGI:1919047 ENTREZGENE
NCBI Gene 71797 ENTREZGENE
PANTHER Carb_sulphotransferase UniProtKB/TrEMBL
Pfam Sulfotransfer_2 UniProtKB/TrEMBL
PhenoGen Chst13 PhenoGen
UniProt D3Z6E3 ENTREZGENE, UniProtKB/TrEMBL
  Q9CT82_MOUSE UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-10-09 Chst13  carbohydrate sulfotransferase 13    carbohydrate (chondroitin 4) sulfotransferase 13  Symbol and/or name change 5135510 APPROVED