Palm3 (paralemmin 3) - Rat Genome Database
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Gene: Palm3 (paralemmin 3) Mus musculus
Analyze
Symbol: Palm3
Name: paralemmin 3
RGD ID: 1622256
MGI Page MGI
Description: Predicted to have ATP binding activity. Predicted to be involved in Toll signaling pathway; negative regulation of cytokine-mediated signaling pathway; and response to lipopolysaccharide. Predicted to localize to cytoplasm and plasma membrane. Is expressed in gut; nervous system; and urinary system. Orthologous to human PALM3 (paralemmin 3); INTERACTS WITH buta-1,3-diene; potassium dichromate; 17beta-estradiol (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: 4432412L15Rik; AL024300; paralemmin-3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39884,747,787 - 84,757,300 (+)NCBIGRCm39mm39
GRCm38884,021,157 - 84,030,671 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl884,021,471 - 84,030,295 (+)EnsemblGRCm38mm10GRCm38
MGSCv37886,545,373 - 86,554,194 (+)NCBIGRCm37mm9NCBIm37
MGSCv36886,911,579 - 86,920,170 (+)NCBImm8
Celera888,314,557 - 88,323,370 (+)NCBICelera
Cytogenetic Map8C2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:7671812   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11478809   PMID:12466851   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073   PMID:18799693  
PMID:21267068   PMID:21677750   PMID:21873635   PMID:24457600   PMID:26772416  


Genomics

Comparative Map Data
Palm3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39884,747,787 - 84,757,300 (+)NCBIGRCm39mm39
GRCm38884,021,157 - 84,030,671 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl884,021,471 - 84,030,295 (+)EnsemblGRCm38mm10GRCm38
MGSCv37886,545,373 - 86,554,194 (+)NCBIGRCm37mm9NCBIm37
MGSCv36886,911,579 - 86,920,170 (+)NCBImm8
Celera888,314,557 - 88,323,370 (+)NCBICelera
Cytogenetic Map8C2NCBI
PALM3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1914,053,363 - 14,062,076 (-)EnsemblGRCh38hg38GRCh38
GRCh381914,053,367 - 14,062,137 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371914,164,179 - 14,172,908 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361914,025,179 - 14,030,971 (-)NCBINCBI36hg18NCBI36
Celera1914,057,978 - 14,063,772 (-)NCBI
Cytogenetic Map19p13.12NCBI
HuRef1913,736,234 - 13,742,106 (-)NCBIHuRef
CHM1_11914,164,770 - 14,170,545 (-)NCBICHM1_1
Palm3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01925,143,464 - 25,152,275 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1925,143,428 - 25,151,891 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01936,120,355 - 36,128,818 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41925,807,363 - 25,815,718 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1923,669,466 - 23,678,277 (-)NCBICelera
Cytogenetic Map19q11NCBI
Palm3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541532,762,851 - 32,771,409 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541532,762,631 - 32,772,809 (-)NCBIChiLan1.0ChiLan1.0
PALM3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11914,344,108 - 14,352,958 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1914,344,347 - 14,350,074 (-)Ensemblpanpan1.1panPan2
PALM3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2048,452,772 - 48,456,397 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12048,452,778 - 48,456,625 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Palm3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366592,720,609 - 2,729,221 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PALM3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl265,117,290 - 65,127,119 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1265,117,176 - 65,127,136 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2265,391,338 - 65,401,274 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PALM3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl612,699,942 - 12,708,737 (-)Ensembl
ChlSab1.1612,699,704 - 12,707,470 (-)NCBI
Palm3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249011,288,899 - 1,298,502 (-)NCBI

Position Markers
RH125523  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38884,029,611 - 84,029,714UniSTSGRCm38
MGSCv37886,553,510 - 86,553,613UniSTSGRCm37
Celera888,322,686 - 88,322,789UniSTS
Cytogenetic Map8C3UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
14746987Manh64_mmandible shape 64 (mouse)85005330684053306Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85005330684053306Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871102903105103009Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7113678390202598Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71287817123895615Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871287817123895615Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined871396181105396393Mouse
1300920Pitm3_mprion incubation time 3 (mouse)Not determined873202495107202598Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)873400000126100000Mouse
1558890Lith18_mlithogenic gene 18 (mouse)Not determined875675517109675623Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined875685348109685497Mouse
1301808Nhdlq1_mnon-HDL QTL 1 (mouse)Not determined875685348109685497Mouse
1301874Hdlq16_mHDL QTL 16 (mouse)Not determined875685348109685497Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined875685348109685497Mouse
1301099Cbm2_mcerebellum weight 2 (mouse)Not determined878518613112518703Mouse
1301581Char2_mP. chabaudi malaria resistance QTL 2 (mouse)Not determined879082178113082403Mouse
12904012Cfq10_mconditioned fear QTL 10 (mouse)88006677589014359Mouse
10755530Wbc2_mwhite blood cell count 2 (mouse)881092664115092664Mouse
10755519Wbc1_mwhite blood cell count 1 (mouse)881619151115619151Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:608
Count of miRNA genes:398
Interacting mature miRNAs:466
Transcripts:ENSMUST00000055077, ENSMUST00000142367, ENSMUST00000154171
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000055077   ⟹   ENSMUSP00000051396
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,021,471 - 84,030,295 (+)Ensembl
RefSeq Acc Id: ENSMUST00000142367
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,021,471 - 84,029,188 (+)Ensembl
RefSeq Acc Id: ENSMUST00000154171
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,026,075 - 84,027,049 (+)Ensembl
RefSeq Acc Id: NM_028877   ⟹   NP_083153
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39884,748,103 - 84,756,924 (+)NCBI
GRCm38884,021,474 - 84,030,295 (+)NCBI
MGSCv37886,545,373 - 86,554,194 (+)RGD
Celera888,314,557 - 88,323,370 (+)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017312990   ⟹   XP_017168479
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39884,747,787 - 84,756,932 (+)NCBI
GRCm38884,021,157 - 84,030,303 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030243816   ⟹   XP_030099676
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39884,752,608 - 84,757,300 (+)NCBI
GRCm38884,024,859 - 84,030,671 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_083153 (Get FASTA)   NCBI Sequence Viewer  
  XP_017168479 (Get FASTA)   NCBI Sequence Viewer  
  XP_030099676 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein A2TJV2 (Get FASTA)   NCBI Sequence Viewer  
  ABM92364 (Get FASTA)   NCBI Sequence Viewer  
  BAB29393 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_083153   ⟸   NM_028877
- UniProtKB: A2TJV2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017168479   ⟸   XM_017312990
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_030099676   ⟸   XM_030243816
- Peptide Label: isoform X1
RefSeq Acc Id: ENSMUSP00000051396   ⟸   ENSMUST00000055077

Promoters
RGD ID:8667635
Promoter ID:EPDNEW_M11849
Type:multiple initiation site
Name:Palm3_1
Description:Mus musculus paralemmin 3 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38884,021,469 - 84,021,529EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1921587 AgrOrtholog
Ensembl Genes ENSMUSG00000047986 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000051396 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000055077 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro Paralemmin-3 UniProtKB/Swiss-Prot
KEGG Report mmu:74337 UniProtKB/Swiss-Prot
MGD MGI:1921587 ENTREZGENE
NCBI Gene 74337 ENTREZGENE
PANTHER PTHR47528 UniProtKB/Swiss-Prot
PhenoGen Palm3 PhenoGen
UniGene Mm.250943 ENTREZGENE
UniProt A2TJV2 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q9CRS0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Palm3  paralemmin 3  4432412L15Rik  RIKEN cDNA 4432412L15 gene  Symbol and/or name change 5135510 APPROVED