Nr2c2ap (nuclear receptor 2C2-associated protein)

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Gene: Nr2c2ap (nuclear receptor 2C2-associated protein) Mus musculus

Analyze

Symbol:

Nr2c2ap

Name:

nuclear receptor 2C2-associated protein

RGD ID:

1622225

MGI Page

MGI

Description:

Predicted to localize to nucleoplasm. Orthologous to human NR2C2AP (nuclear receptor 2C2 associated protein); INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; 4-hydroxyphenyl retinamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

2310073E15Rik; MGC103332; TR4 orphan receptor-associated 16 kDa protein

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	70,583,977 - 70,586,402 (+)	NCBI	GRCm39		mm39
GRCm38	8	70,131,327 - 70,133,752 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	70,131,333 - 70,133,749 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	72,655,232 - 72,657,647 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	73,060,322 - 73,062,741 (+)	NCBI			mm8
Celera	8	72,686,772 - 72,689,185 (+)	NCBI		Celera
Cytogenetic Map	8	B3.3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

MHC class II deficiency (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (ISO)

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,3,7,8-Tetrachlorodibenzofuran (ISO)

4-hydroxyphenyl retinamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

benzo[a]pyrene (EXP,ISO)

bisphenol A (ISO)

calcitriol (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

dibutyl phthalate (EXP)

endosulfan (ISO)

flutamide (ISO)

folic acid (EXP)

methyl methanesulfonate (ISO)

nefazodone (ISO)

perfluorononanoic acid (ISO)

pirinixic acid (EXP)

potassium chromate (ISO)

rotenone (ISO)

sunitinib (ISO)

testosterone (ISO)

tetrachloromethane (EXP,ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

nucleoplasm (ISO)

nucleus (IEA)

Molecular Function

molecular_function (ND)

protein binding (ISO)

References

References - curated


1.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10349636	PMID:10922068	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:12477932	PMID:14610273	PMID:15782199	PMID:16141072	PMID:16141073	PMID:18799693
PMID:21873635

Genomics

Comparative Map Data

Nr2c2ap
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	70,583,977 - 70,586,402 (+)	NCBI	GRCm39		mm39
GRCm38	8	70,131,327 - 70,133,752 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	70,131,333 - 70,133,749 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	72,655,232 - 72,657,647 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	73,060,322 - 73,062,741 (+)	NCBI			mm8
Celera	8	72,686,772 - 72,689,185 (+)	NCBI		Celera
Cytogenetic Map	8	B3.3	NCBI

NR2C2AP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	19	19,201,416 - 19,203,424 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38.p13 Ensembl	19	19,201,409 - 19,203,414 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	19	19,201,409 - 19,203,414 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	19	19,312,223 - 19,314,238 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	19,173,224 - 19,175,238 (-)	NCBI	NCBI36		hg18	NCBI36
Celera	19	19,217,020 - 19,219,034 (-)	NCBI
Cytogenetic Map	19	p13.11	NCBI
HuRef	19	18,875,988 - 18,878,002 (-)	NCBI		HuRef
CHM1_1	19	19,312,729 - 19,314,749 (-)	NCBI		CHM1_1

Nr2c2ap
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	16	21,036,648 - 21,039,481 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	21,036,646 - 21,038,844 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	20,886,519 - 20,889,368 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	19,771,849 - 19,774,045 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	16	19,477,049 - 19,479,245 (-)	NCBI		Celera
Cytogenetic Map	16	p14	NCBI

Nr2c2ap
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955524	2,618,957 - 2,635,982 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955524	2,634,302 - 2,635,982 (+)	NCBI	ChiLan1.0	ChiLan1.0

NR2C2AP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	19	19,640,163 - 19,642,179 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	19,640,163 - 19,642,179 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	19	18,639,380 - 18,641,725 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

NR2C2AP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	20	43,976,665 - 43,977,823 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	20	43,976,373 - 43,978,410 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Nr2c2ap
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936596	2,223,907 - 2,225,434 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NR2C2AP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	58,675,990 - 58,678,026 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	58,675,987 - 58,678,025 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

LOC103234206
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	17,669,412 - 17,671,640 (-)	NCBI
ChlSab1.1 Ensembl	6	17,669,933 - 17,671,398 (-)	Ensembl

Nr2c2ap
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624908	2,094,783 - 2,097,088 (-)	NCBI

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1558870	Eae36_m	experimental allergic encephalomyelitis susceptibility 36 (mouse)			Not determined		8	14723160	71045600	Mouse
1357811	Orq3_m	ovulation rate QTL 3 (mouse)			Not determined		8	32016544	71287993	Mouse
4141437	W10q14_m	weight 10 weeks QTL 14 (mouse)			Not determined			32016544	71287993	Mouse
4141172	W6q9_m	weight 6 weeks QTL 9 (mouse)			Not determined			32016544	71287993	Mouse
4140966	Egq12_m	early growth QTL 12 (mouse)			Not determined			32016544	71287993	Mouse
4140967	Bmd39_m	bone mineral density 39 (mouse)			Not determined		8	32016544	117238700	Mouse
1558875	Eae31_m	experimental allergic encephalomyelitis susceptibility 31 (mouse)			Not determined		8	34642776	114837007	Mouse
1301013	Capsq4_m	capsaicin sensitivity related QTL 4 (mouse)			Not determined		8	36163000	92728652	Mouse
27226754	Femd6_m	femur midshaft diameter 6, 10 week (mouse)					8	37400000	109600000	Mouse
12904744	Carcdq1_m	cardiac collagen deposition QTL 1 (mouse)					8	39709256	94689598	Mouse
1301544	Iba3_m	induction of brown adipocytes 3 (mouse)			Not determined		8	44294880	78295025	Mouse
1301717	Adip4_m	adiposity 4 (mouse)			Not determined		8	47637030	81637146	Mouse
10766453	Char11_m	P. chabaudi malaria resistance QTL 11 (mouse)					8	47637030	81637146	Mouse
1301441	Skull11_m	skull morphology 11 (mouse)			Not determined		8	47737134	81737254	Mouse
1357715	Alaa3_m	alopecia areata 3 (mouse)			Not determined		8	48792939	82793021	Mouse
14746987	Manh64_m	mandible shape 64 (mouse)					8	50053306	84053306	Mouse
14747005	Mancz7_m	mandible centroid size 7 (mouse)					8	50053306	84053306	Mouse
14700686	Civq3_m	cerebral infarct volume QTL 3 (mouse)					8	51882191	85882191	Mouse
1301506	Aevm1_m	autoimmune extremity vasculitis in MRL mice 1 (mouse)			Not determined		8	54287817	88287993	Mouse
1301952	Im3_m	immunoregulatory 3 (mouse)			Not determined		8	54706614	88706763	Mouse
10412287	Carg3_m	Candida albicans resistance gene 3 (mouse)			Not determined		8	55545028	89545028	Mouse
11353828	Gf7_m	gonadal fat pad weight 7 (mouse)					8	58201479	92201479	Mouse
10043975	Obq31_m	obesity QTL 31 (mouse)			Not determined		8	58409776	92409776	Mouse
1301688	Orch6_m	autoimmune orchitis resistance 6 (mouse)			Not determined		8	60786850	94786976	Mouse
4141285	Tgq18_m	triglyceride QTL 18 (mouse)			Not determined			63460107	97460107	Mouse
4141797	Skmw16_m	skeletal muscle weight 16 (mouse)			Not determined		8	63939547	97939696	Mouse
1357787	Vtbt5_m	vertebral trabecular bone trait 5 (mouse)			Not determined		8	65357768	99357920	Mouse
10043992	Hbnr11_m	Heligmosomoides bakeri nematode resistance 11 (mouse)			Not determined		8	65600207	99600347	Mouse
10766466	Char12_m	P. chabaudi malaria resistance QTL 12 (mouse)					8	68269827	82600347	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	266
Count of miRNA genes:	220
Interacting mature miRNAs:	244
Transcripts:	ENSMUST00000095273
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001025586	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001025587	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_104434	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006509777	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AA111465	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC167132	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK010140	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK010864	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK160346	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK168268	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK217197	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC092288	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY100716	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY722132	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466569	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CX222571	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000095273 ⟹ ENSMUSP00000092907

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	70,131,347 - 70,133,739 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000211898 ⟹ ENSMUSP00000148493

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	70,131,333 - 70,133,748 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000212851

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	70,131,347 - 70,133,749 (+)	Ensembl

RefSeq Acc Id:

NM_001025586 ⟹ NP_001020757

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	70,583,977 - 70,586,402 (+)	NCBI
GRCm38	8	70,131,327 - 70,133,752 (+)	NCBI
MGSCv37	8	72,655,232 - 72,657,647 (+)	RGD
Celera	8	72,686,766 - 72,689,185 (+)	NCBI
cM Map	8		ENTREZGENE

Sequence:

show sequence

GTGTCTGTGTAGCACTGCGCGTGCGCTATCCGCACGCGGTTCCGGGTTCGTAGATCTGCAGAGC
CGCTGGGGCTCGGTTGGTTTAGAAAGCTGCTTTTAGTGTTCCTCCGGTTCCCAGATCGCCCACC
TTGTCATATAGAGGTGGCCGGGGGTAGGGAGTGTGGCCGCTAGATCAAGTTGGGAGTGGCAGCG
CCGGGCTTCGAACTCGCGTTCCGCGAGTCATCCTAGAACTGTGATGACTCAGTCTTTGGTTTGT
CCGGACACTGTGAGCAGGGTCAGTTCTGTGCTCAATCGCAACAGCCGGCAATTTGGAAAGAAAC
ATCTTTTTGACCAGGATGAAGAGACGTGCTGGAACTCTGACCAGGGCCCCTCCCAGTGGGTGTC
ACTCGAGTTTCCCCAGTGTGTTCAGATCACACAGCTGCAGGTGCAGTTCCAGGGTGGCTTCTCC
AGTCGCCACAGCTGCCTGGAAGGTTCACGGGGTGGGGAGGCACTCAGCAAGATTGTAGATTTCT
ACCCTGAGGACACCAATGCCCTTCAGACCTTCTCCATCCCCACAATGGAGGTGGACCGACTGAA
GTTGACTTTTGAGGACACCACCGACTTTTTTGGCCGTGTAGTCATCTACCACCTGCGGGTGCTG
GGTGAGAAGGCAGGGTGAGAAGCGGCTATTCTTCCAGGAAGCCCCCCTGGGAGGCACCCTGAAG
ACCTTCAAGTTCTGCACAGATTTATTGGTTCCTGTTGCGGAGGGCTCTTCCCACCACTGTCCAG
GAGCTGCCTTTCAAGCCAGTTGTGGGCTGACTGTCCCTGAGTGCCTGGGTTCCCAGCAGGCTGT
CTTCACTCGGGGTCCACAGGCCCCAGGGTGCTCTGGAACAATCTGAGGATGTGGCTCTCCATCA
CCTGTTGCACTGTGGGAGGAGGTGGGAGGAGGGGTGAGCTGGGGGAGCCGGGAAGAAGGGACTG
AAGAAGATGCTCAGCCTCTGATGTAAACAGGAGGCCGTGAGCAGGAAACTGTCCAGCCAAGTGC
TTTTCTGCTTTTCTGTTCTTGCTGGGCTGGGCTCACTACCTTGAGAATAGGTTGCTTTAAGGCA
AGGTTTGCCTGTCTCCCTTCACTCCTGTATCCCACCCACCCTCCGAATTGTAGCTCTCTCTGCC
TCCAGAACCATGAGTCCAAATAAAATGTTAAAAAAAACCAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001025587 ⟹ NP_001020758

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	70,583,977 - 70,586,402 (+)	NCBI
GRCm38	8	70,131,327 - 70,133,752 (+)	NCBI
MGSCv37	8	72,655,232 - 72,657,647 (+)	RGD
Celera	8	72,686,766 - 72,689,185 (+)	NCBI
cM Map	8		ENTREZGENE

Sequence:

show sequence

GTGTCTGTGTAGCACTGCGCGTGCGCTATCCGCACGCGGTTCCGGGTTCGTAGATCTGCAGAGC
CGCTGGGGCTCGGTTGGTTTAGAAAGCTGCTTTTAGTGTTCCTCCGGTTCCCAGATCGCCCACC
TTGTCATATAGAGGTGGCCGGGGGTAGGGAGTGTGGCCGCTAGATCAAGTTGGGAGTGGCAGCG
CCGGGCTTCGAACTCGCGTTCCGCGAGTCATCCTAGAACTGTGATGACTCAGTCTTTGGTTTGT
CCGGACACTGTGAGCAGGGTCAGTTCTGTGCTCAATCGCAACAGCCGGCAATTTGGAAAGAAAC
ATCTTTTTGACCAGGATGAAGAGACGTGCTGGAACTCTGACCAGGGCCCCTCCCAGTGGGTGTC
ACTCGAGTTTCCCCAGTGTGTTCAGATCACACAGCTGCAGGTGCAGTTCCAGGGTGGCTTCTCC
AGTCGCCACAGCTGCCTGGAAGGTTCACGGGGTGGGGAGGCACTCAGCAAGATTGTAGATTTCT
ACCCTGAGGACACCAATGCCCTTCAGCTTCTCCATCCCCACAATGGAGGTGGACCGACTGAAGT
TGACTTTTGAGGACACCACCGACTTTTTTGGCCGTGTAGTCATCTACCACCTGCGGGTGCTGGG
TGAGAAGGCAGGGTGAGAAGCGGCTATTCTTCCAGGAAGCCCCCCTGGGAGGCACCCTGAAGAC
CTTCAAGTTCTGCACAGATTTATTGGTTCCTGTTGCGGAGGGCTCTTCCCACCACTGTCCAGGA
GCTGCCTTTCAAGCCAGTTGTGGGCTGACTGTCCCTGAGTGCCTGGGTTCCCAGCAGGCTGTCT
TCACTCGGGGTCCACAGGCCCCAGGGTGCTCTGGAACAATCTGAGGATGTGGCTCTCCATCACC
TGTTGCACTGTGGGAGGAGGTGGGAGGAGGGGTGAGCTGGGGGAGCCGGGAAGAAGGGACTGAA
GAAGATGCTCAGCCTCTGATGTAAACAGGAGGCCGTGAGCAGGAAACTGTCCAGCCAAGTGCTT
TTCTGCTTTTCTGTTCTTGCTGGGCTGGGCTCACTACCTTGAGAATAGGTTGCTTTAAGGCAAG
GTTTGCCTGTCTCCCTTCACTCCTGTATCCCACCCACCCTCCGAATTGTAGCTCTCTCTGCCTC
CAGAACCATGAGTCCAAATAAAATGTTAAAAAAAACCAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NR_104434

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	70,583,977 - 70,586,402 (+)	NCBI
GRCm38	8	70,131,327 - 70,133,752 (+)	NCBI
Celera	8	72,686,766 - 72,689,185 (+)	NCBI

Sequence:

show sequence

GTGTCTGTGTAGCACTGCGCGTGCGCTATCCGCACGCGGTTCCGGGTTCGTAGATCTGCAGAGC
CGCTGGGGCTCGGTTGGTTTAGAAAGCTGCTTTTAGTGTTCCTCCGGTTCCCAGATCGCCCACC
TTGTCATATAGAGGTGGCCGGGGGTAGGGAGTGTGGCCGCTAGATCAAGTTGGGAGTGGCAGCG
CCGGGCTTCGAACTCGCGTTCCGCGAGTCATCCTAGAACTGTGATGACTCAGTCTTTGGTTTGT
CCGGACACTGTGAGCAGGGTCAGTTCTGTGCTCAATCGCAACAGCCGGCAATTTGGAAAGAAAC
ATCTTTTTGACCAGGATGAAGAGACGTGCTGGAACTCTGACCAGGTTCACGGGGTGGGGAGGCA
CTCAGCAAGATTGTAGATTTCTACCCTGAGGACACCAATGCCCTTCAGACCTTCTCCATCCCCA
CAATGGAGGTGGACCGACTGAAGTTGACTTTTGAGGACACCACCGACTTTTTTGGCCGTGTAGT
CATCTACCACCTGCGGGTGCTGGGTGAGAAGGCAGGGTGAGAAGCGGCTATTCTTCCAGGAAGC
CCCCCTGGGAGGCACCCTGAAGACCTTCAAGTTCTGCACAGATTTATTGGTTCCTGTTGCGGAG
GGCTCTTCCCACCACTGTCCAGGAGCTGCCTTTCAAGCCAGTTGTGGGCTGACTGTCCCTGAGT
GCCTGGGTTCCCAGCAGGCTGTCTTCACTCGGGGTCCACAGGCCCCAGGGTGCTCTGGAACAAT
CTGAGGATGTGGCTCTCCATCACCTGTTGCACTGTGGGAGGAGGTGGGAGGAGGGGTGAGCTGG
GGGAGCCGGGAAGAAGGGACTGAAGAAGATGCTCAGCCTCTGATGTAAACAGGAGGCCGTGAGC
AGGAAACTGTCCAGCCAAGTGCTTTTCTGCTTTTCTGTTCTTGCTGGGCTGGGCTCACTACCTT
GAGAATAGGTTGCTTTAAGGCAAGGTTTGCCTGTCTCCCTTCACTCCTGTATCCCACCCACCCT
CCGAATTGTAGCTCTCTCTGCCTCCAGAACCATGAGTCCAAATAAAATGTTAAAAAAAACCAAA
AAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006509777 ⟹ XP_006509840

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	70,584,163 - 70,586,402 (+)	NCBI
GRCm38	8	70,131,513 - 70,133,752 (+)	NCBI

Sequence:

show sequence

GCAGCGCCGGGCTTCGAACTCGCGTTCCGCGAGTCATCCTAGAACTGTGATGACTCAGTCTTTG
GTTTGTCCGGACACTGTGAGCAGGGTCAGTTCTGTGCTCAATCGCAACAGCCGGCAATTTGGAA
AGAAACATCTTTTTGACCAGGATGAAGAGACGTGCTGGAACTCTGACCAGGGCCCCTCCCAGTG
GGTGTCACTCGAGTTTCCCCAGTGTGTTCAGATCACACAGCTGCAGGTGCAGTTCCAGGGTGGC
TTCTCCAGTCGCCACAGCTGCCTGGAAGGTACAAGAAAGCTGAGAGGTGGGGTGTCCACAGGGT
TCCCTGGATTCTTAGCCCATTTCTCCATTGCAGGTTCACGGGGTGGGGAGGCACTCAGCAAGAT
TGTAGATTTCTACCCTGAGGACACCAATGCCCTTCAGACCTTCTCCATCCCCACAATGGAGGTG
GACCGACTGAAGTTGACTTTTGAGGACACCACCGACTTTTTTGGCCGTGTAGTCATCTACCACC
TGCGGGTGCTGGGTGAGAAGGCAGGGTGAGAAGCGGCTATTCTTCCAGGAAGCCCCCCTGGGAG
GCACCCTGAAGACCTTCAAGTTCTGCACAGATTTATTGGTTCCTGTTGCGGAGGGCTCTTCCCA
CCACTGTCCAGGAGCTGCCTTTCAAGCCAGTTGTGGGCTGACTGTCCCTGAGTGCCTGGGTTCC
CAGCAGGCTGTCTTCACTCGGGGTCCACAGGCCCCAGGGTGCTCTGGAACAATCTGAGGATGTG
GCTCTCCATCACCTGTTGCACTGTGGGAGGAGGTGGGAGGAGGGGTGAGCTGGGGGAGCCGGGA
AGAAGGGACTGAAGAAGATGCTCAGCCTCTGATGTAAACAGGAGGCCGTGAGCAGGAAACTGTC
CAGCCAAGTGCTTTTCTGCTTTTCTGTTCTTGCTGGGCTGGGCTCACTACCTTGAGAATAGGTT
GCTTTAAGGCAAGGTTTGCCTGTCTCCCTTCACTCCTGTATCCCACCCACCCTCCGAATTGTAG
CTCTCTCTGCCTCCAGAACCATGAGTCCAAATAAAATGTTAAAAAAAACCAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001020757	(Get FASTA)	NCBI Sequence Viewer
	NP_001020758	(Get FASTA)	NCBI Sequence Viewer
	XP_006509840	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH92288	(Get FASTA)	NCBI Sequence Viewer
	BAE35750	(Get FASTA)	NCBI Sequence Viewer
	EDL28781	(Get FASTA)	NCBI Sequence Viewer
	EDL28782	(Get FASTA)	NCBI Sequence Viewer
	EDL28783	(Get FASTA)	NCBI Sequence Viewer
	EDL28784	(Get FASTA)	NCBI Sequence Viewer
	Q3TV70	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_001020757 ⟸ NM_001025586
- Peptide Label:	isoform 1
- UniProtKB:	Q3TV70 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MTQSLVCPDTVSRVSSVLNRNSRQFGKKHLFDQDEETCWNSDQGPSQWVSLEFPQCVQITQLQV QFQGGFSSRHSCLEGSRGGEALSKIVDFYPEDTNALQTFSIPTMEVDRLKLTFEDTTDFFGRVV IYHLRVLGEKAG hide sequence

RefSeq Acc Id:	NP_001020758 ⟸ NM_001025587
- Peptide Label:	isoform 2
- UniProtKB:	Q3TV70 (UniProtKB/Swiss-Prot), Q569V8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTQSLVCPDTVSRVSSVLNRNSRQFGKKHLFDQDEETCWNSDQGPSQWVSLEFPQCVQITQLQV QFQGGFSSRHSCLEGSRGGEALSKIVDFYPEDTNALQLLHPHNGGGPTEVDF hide sequence

RefSeq Acc Id:	XP_006509840 ⟸ XM_006509777
- Peptide Label:	isoform X1
- Sequence:	show sequence MTQSLVCPDTVSRVSSVLNRNSRQFGKKHLFDQDEETCWNSDQGPSQWVSLEFPQCVQITQLQV QFQGGFSSRHSCLEGTRKLRGGVSTGFPGFLAHFSIAGSRGGEALSKIVDFYPEDTNALQTFSI PTMEVDRLKLTFEDTTDFFGRVVIYHLRVLGEKAG hide sequence

RefSeq Acc Id:

ENSMUSP00000148493 ⟸ ENSMUST00000211898

RefSeq Acc Id:

ENSMUSP00000092907 ⟸ ENSMUST00000095273

Promoters

RGD ID:

8667275

Promoter ID:

EPDNEW_M11669

Type:

multiple initiation site

Name:

Nr2c2ap_1

Description:

Mus musculus nuclear receptor 2C2-associated protein , transcriptvariant 3, non-coding RNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	8	70,131,358 - 70,131,418	EPDNEW

RGD ID:

6842507

Promoter ID:

MM_KWN:54662

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

NM_001025586, NM_001025587, UC009LYV.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	8	72,654,331 - 72,655,722 (+)	MPROMDB

RGD ID:

6848899

Promoter ID:

MM_TRO:9540

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

MEF_B6

Transcripts:

MTR015037.8.1174.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	8	72,655,626 - 72,656,126 (+)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1922942	AgrOrtholog
Ensembl Genes	ENSMUSG00000071078	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSMUSP00000092907	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUSP00000148493	UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000095273	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUST00000211898	ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH	2.60.120.260	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	Galactose-bd-like_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	NR2C2AP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:75692	UniProtKB/Swiss-Prot
MGD	MGI:1922942	ENTREZGENE
NCBI Gene	75692	ENTREZGENE
PANTHER	PTHR31535:SF1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Nr2c2ap	PhenoGen
Superfamily-SCOP	SSF49785	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene	Mm.161167	ENTREZGENE
	Mm.390045	ENTREZGENE
UniProt	A0A1D5RLT0_MOUSE	UniProtKB/TrEMBL
	NR2CA_MOUSE	UniProtKB/Swiss-Prot, ENTREZGENE
	Q569V8	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar