2810429I04Rik (RIKEN cDNA 2810429I04 gene) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: 2810429I04Rik (RIKEN cDNA 2810429I04 gene) Mus musculus
Analyze
Symbol: 2810429I04Rik
Name: RIKEN cDNA 2810429I04 gene
RGD ID: 1622221
MGI Page MGI
Description: Enables miRNA binding activity. Acts upstream of or within cardiac muscle cell proliferation. Is expressed in several structures, including liver; lung; muscle tissue; spleen; and stomach.
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: 1700024F13Rik; AI256682; expressed sequence AI256682; hypothetical protein LOC73270; RIKEN cDNA 1700024F13 gene
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39133,528,232 - 3,551,393 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl133,528,205 - 3,552,395 (+)EnsemblGRCm39 Ensembl
GRCm38133,478,232 - 3,501,393 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl133,478,230 - 3,501,393 (+)EnsemblGRCm38mm10GRCm38
MGSCv37133,477,549 - 3,491,644 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36133,477,480 - 3,484,348 (+)NCBIMGSCv36mm8
Celera133,470,583 - 3,484,705 (+)NCBICelera
Cytogenetic Map13A1NCBI
cM Map131.94NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:18799693   PMID:21267068   PMID:24316575   PMID:30553885   PMID:32374467  


Genomics

Variants

.
Variants in 2810429I04Rik
600 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301890Adip7_madiposity 7 (mouse)Not determined13123454672Mouse
1301227Skull19_mskull morphology 19 (mouse)Not determined13123454672Mouse
1301661Tshp13_mtooth shape 13 (mouse)Not determined13123454672Mouse
1301255Cd4ts6_mCD4 T cell subset 6 (mouse)Not determined1316854534168684Mouse
10449140Eosn2_meosinophil differential 2 (mouse)1322131134221311Mouse
15039338Nmrs34_mNAFLD-associated magnetic resonance shift 34 (mouse)1322131134221311Mouse
1301455Bmd3_mbone mineral density 3 (mouse)Not determined13347761237477820Mouse
10045624Heal24_mwound healing/regeneration (mouse)Not determined13347761237477820Mouse
10045625Heal23_mwound healing/regeneration 23 (mouse)Not determined13347761237477820Mouse

Markers in Region
RH136069  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38133,490,395 - 3,490,550UniSTSGRCm38
MGSCv37133,489,641 - 3,489,796UniSTSGRCm37
Celera133,482,674 - 3,482,829UniSTS
Cytogenetic Map13A1UniSTS
Z72363  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map13A1UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000180567
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,528,243 - 3,542,406 (+)Ensembl
GRCm38.p6 Ensembl133,478,303 - 3,492,406 (+)Ensembl
RefSeq Acc Id: ENSMUST00000180836
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,528,255 - 3,538,561 (+)Ensembl
GRCm38.p6 Ensembl133,478,255 - 3,488,561 (+)Ensembl
RefSeq Acc Id: ENSMUST00000181708
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,528,243 - 3,538,058 (+)Ensembl
GRCm38.p6 Ensembl133,478,243 - 3,488,058 (+)Ensembl
RefSeq Acc Id: ENSMUST00000185835
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,528,277 - 3,535,749 (+)Ensembl
GRCm38.p6 Ensembl133,478,277 - 3,485,749 (+)Ensembl
RefSeq Acc Id: ENSMUST00000186183
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,528,230 - 3,536,177 (+)Ensembl
GRCm38.p6 Ensembl133,478,230 - 3,486,177 (+)Ensembl
RefSeq Acc Id: ENSMUST00000186610
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,528,232 - 3,540,467 (+)Ensembl
GRCm38.p6 Ensembl133,478,304 - 3,489,263 (+)Ensembl
RefSeq Acc Id: ENSMUST00000186642
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,528,262 - 3,535,398 (+)Ensembl
GRCm38.p6 Ensembl133,478,262 - 3,485,398 (+)Ensembl
RefSeq Acc Id: ENSMUST00000187921
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,528,215 - 3,551,394 (+)Ensembl
GRCm38.p6 Ensembl133,478,234 - 3,485,187 (+)Ensembl
RefSeq Acc Id: ENSMUST00000188642
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,528,232 - 3,551,393 (+)Ensembl
GRCm38.p6 Ensembl133,498,045 - 3,501,393 (+)Ensembl
RefSeq Acc Id: ENSMUST00000189464
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,528,206 - 3,549,460 (+)Ensembl
GRCm38.p6 Ensembl133,478,243 - 3,498,570 (+)Ensembl
RefSeq Acc Id: ENSMUST00000190547
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,528,221 - 3,551,405 (+)Ensembl
GRCm38.p6 Ensembl133,478,326 - 3,498,110 (+)Ensembl
RefSeq Acc Id: ENSMUST00000191585
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,528,232 - 3,541,658 (+)Ensembl
GRCm38.p6 Ensembl133,478,246 - 3,489,283 (+)Ensembl
RefSeq Acc Id: ENSMUST00000221008
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,528,232 - 3,544,398 (+)Ensembl
GRCm38.p6 Ensembl133,478,267 - 3,494,398 (+)Ensembl
RefSeq Acc Id: ENSMUST00000241323
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,528,210 - 3,551,394 (+)Ensembl
RefSeq Acc Id: ENSMUST00000241651
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,528,233 - 3,551,393 (+)Ensembl
RefSeq Acc Id: ENSMUST00000241777
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,528,210 - 3,544,353 (+)Ensembl
RefSeq Acc Id: ENSMUST00000241786
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,528,243 - 3,542,907 (+)Ensembl
RefSeq Acc Id: ENSMUST00000242054
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,528,234 - 3,549,455 (+)Ensembl
RefSeq Acc Id: ENSMUST00000242175
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,528,232 - 3,551,393 (+)Ensembl
RefSeq Acc Id: ENSMUST00000242233
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,528,232 - 3,549,460 (+)Ensembl
RefSeq Acc Id: ENSMUST00000242364
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,528,232 - 3,551,168 (+)Ensembl
RefSeq Acc Id: ENSMUST00000242715
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,528,205 - 3,552,395 (+)Ensembl
RefSeq Acc Id: ENSMUST00000242819
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,528,231 - 3,551,394 (+)Ensembl
RefSeq Acc Id: ENSMUST00000242953
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,528,243 - 3,544,776 (+)Ensembl
RefSeq Acc Id: ENSMUST00000243244
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,528,240 - 3,551,394 (+)Ensembl
RefSeq Acc Id: ENSMUST00000243311
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,528,233 - 3,551,393 (+)Ensembl
RefSeq Acc Id: ENSMUST00000243533
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,528,232 - 3,551,394 (+)Ensembl
RefSeq Acc Id: ENSMUST00000243609
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,528,248 - 3,551,393 (+)Ensembl
RefSeq Acc Id: ENSMUST00000243820
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,528,232 - 3,551,393 (+)Ensembl
RefSeq Acc Id: ENSMUST00000243911
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,528,210 - 3,542,904 (+)Ensembl
RefSeq Acc Id: ENSMUST00000244239
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,528,208 - 3,551,393 (+)Ensembl
RefSeq Acc Id: ENSMUST00000244582
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,528,256 - 3,551,391 (+)Ensembl
RefSeq Acc Id: ENSMUST00000244759
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,528,232 - 3,551,392 (+)Ensembl
RefSeq Acc Id: ENSMUST00000244768
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,528,247 - 3,551,393 (+)Ensembl
RefSeq Acc Id: ENSMUST00000245132
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,528,243 - 3,551,388 (+)Ensembl
RefSeq Acc Id: ENSMUST00000245236
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,528,233 - 3,551,395 (+)Ensembl
RefSeq Acc Id: ENSMUST00000245475
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,528,218 - 3,549,458 (+)Ensembl
RefSeq Acc Id: ENSMUST00000246905
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,528,253 - 3,549,451 (+)Ensembl
RefSeq Acc Id: NR_015522
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39133,528,232 - 3,544,721 (+)NCBI
GRCm38133,478,232 - 3,494,721 (+)NCBI
MGSCv37133,477,549 - 3,491,644 (+)RGD
Celera133,470,583 - 3,484,705 (+)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_045363
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39133,528,232 - 3,551,393 (+)NCBI
GRCm38133,478,232 - 3,501,393 (+)NCBI
Sequence:
Promoters
RGD ID:6823662
Promoter ID:MM_KWN:13126
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell
Transcripts:AK034854_2810429I04RIK,   UC007PIP.1,   UC007PIQ.1,   UC007PIR.1,   UC007PIS.1,   UC007PIT.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36133,477,409 - 3,477,909 (+)MPROMDB
RGD ID:8679498
Promoter ID:EPDNEW_M17779
Type:initiation region
Name:2810429I04Rik_1
Description:Mus musculus RIKEN cDNA 2810429I04 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38133,478,234 - 3,478,294EPDNEW
RGD ID:15094210
Promoter ID:EPDNEWNC_M2118
Type:multiple initiation site
Name:2810429I04Rik_1
Description:RIKEN cDNA 2810429I04 gene [Source:MGISymbol;Acc:MGI:1924187]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38133,478,234 - 3,478,294EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000097709 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000243244 ENTREZGENE
MGD MGI:1924187 ENTREZGENE
NCBI Gene 76937 ENTREZGENE
PhenoGen 2810429I04Rik PhenoGen
RNAcentral URS0001980F91 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-01-16 2810429I04Rik  RIKEN cDNA 2810429I04 gene  1700024F13Rik  RIKEN cDNA 1700024F13 gene  Data merged from RGD:1611853 737654 PROVISIONAL
2016-04-05 2810429I04Rik  RIKEN cDNA 2810429I04 gene  AI256682  expressed sequence AI256682  Data merged from RGD:1607809 737654 PROVISIONAL