Phf23 (PHD finger protein 23) - Rat Genome Database
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Gene: Phf23 (PHD finger protein 23) Mus musculus
Analyze
Symbol: Phf23
Name: PHD finger protein 23
RGD ID: 1622205
MGI Page MGI
Description: Is expressed in early conceptus; genitourinary system; and limb. Orthologous to human PHF23 (PHD finger protein 23); INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 2410141M05Rik; JUNE-1; novel PHD-finger protein JUNE1; PDH-containing protein JUNE-1; PHD zinc finger containing protein JUNE1; RP23-172M21.13
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391169,886,592 - 69,890,837 (+)NCBIGRCm39mm39
GRCm39 Ensembl1169,886,603 - 69,890,835 (+)Ensembl
GRCm381169,995,766 - 70,000,011 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,995,777 - 70,000,009 (+)EnsemblGRCm38mm10GRCm38
MGSCv371169,809,273 - 69,813,513 (+)NCBIGRCm37mm9NCBIm37
MGSCv361169,811,972 - 69,816,111 (+)NCBImm8
Celera1177,543,581 - 77,547,821 (+)NCBICelera
Cytogenetic Map11B3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
nucleoplasm  (ISO)
nucleus  (IBA)

Molecular Function

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11125038   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12904583   PMID:14610273   PMID:15618518  
PMID:16141072   PMID:16141073   PMID:17015433   PMID:18287559   PMID:18799693   PMID:20059953   PMID:20412781   PMID:21677750   PMID:21873635   PMID:24535671  


Genomics

Comparative Map Data
Phf23
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391169,886,592 - 69,890,837 (+)NCBIGRCm39mm39
GRCm39 Ensembl1169,886,603 - 69,890,835 (+)Ensembl
GRCm381169,995,766 - 70,000,011 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,995,777 - 70,000,009 (+)EnsemblGRCm38mm10GRCm38
MGSCv371169,809,273 - 69,813,513 (+)NCBIGRCm37mm9NCBIm37
MGSCv361169,811,972 - 69,816,111 (+)NCBImm8
Celera1177,543,581 - 77,547,821 (+)NCBICelera
Cytogenetic Map11B3NCBI
PHF23
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl177,235,029 - 7,239,722 (-)EnsemblGRCh38hg38GRCh38
GRCh38177,235,032 - 7,239,656 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37177,138,357 - 7,142,776 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36177,079,071 - 7,083,549 (-)NCBINCBI36hg18NCBI36
Celera177,162,996 - 7,167,472 (-)NCBI
Cytogenetic Map17p13.1NCBI
HuRef177,030,142 - 7,034,231 (-)NCBIHuRef
CHM1_1177,147,095 - 7,151,617 (-)NCBICHM1_1
Phf23
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21054,718,608 - 54,722,784 (+)NCBI
Rnor_6.0 Ensembl1056,605,140 - 56,609,233 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01056,605,078 - 56,609,236 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01056,350,190 - 56,354,355 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41056,841,624 - 56,846,146 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11056,855,246 - 56,859,768 (+)NCBI
Celera1053,872,270 - 53,876,378 (+)NCBICelera
Cytogenetic Map10q24NCBI
Phf23
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554679,671,133 - 9,675,434 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554679,671,133 - 9,675,434 (+)NCBIChiLan1.0ChiLan1.0
PHF23
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1177,252,024 - 7,256,756 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl177,252,024 - 7,256,756 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0177,264,944 - 7,269,549 (-)NCBIMhudiblu_PPA_v0panPan3
PHF23
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl532,202,825 - 32,207,000 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1532,202,636 - 32,207,738 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Phf23
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936595528,832 - 533,212 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PHF23
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1252,590,801 - 52,598,175 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11252,590,801 - 52,595,208 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21254,845,281 - 54,847,896 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PHF23
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1166,609,106 - 6,613,693 (-)NCBI
ChlSab1.1 Ensembl166,609,087 - 6,613,690 (-)Ensembl
Phf23
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247869,852,151 - 9,856,541 (-)NCBI

Position Markers
RH128955  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381169,994,769 - 69,994,944UniSTSGRCm38
MGSCv371169,808,271 - 69,808,446UniSTSGRCm37
Celera1177,542,579 - 77,542,754UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map11B4UniSTS
cM Map1142.0UniSTS
UniSTS:224312  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381169,994,831 - 69,994,943UniSTSGRCm38
MGSCv371169,808,333 - 69,808,445UniSTSGRCm37
Celera1177,542,641 - 77,542,753UniSTS
Cytogenetic Map11B4UniSTS
Cytogenetic Map11B3UniSTS
cM Map1142.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11330000072800000Mouse
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113661246070618665Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113672273870723028Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113719011571190238Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113812528972125383Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114236579176365904Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114236579176365904Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114473921176963931Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
4141000Nidd3_mnon-insulin-dependent diabetes mellitus 3 (mouse)Not determined4515120179151308Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115423592683842826Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5539415972319101Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115859972974863932Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15861720487804412Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5882844085175703Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116179599488808902Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116226517996265327Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116342858181939647Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116342858194173092Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116493951098939647Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116493951098939647Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116493951098939647Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166842594100842826Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166842594100842826Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66842594100842826Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166842594100842826Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166842594100842826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166842594100842826Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116718736579923086Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168300000102000000Mouse
36049778Ars6_mantibody response to SARS-CoV 6, day 15, IgM (mouse)116910000072600000Mouse
36049779Ars7_mantibody response to SARS-CoV 7, day 29, IgG1 (mouse)116910000072600000Mouse
36049784Ars8_mantibody response to SARS-CoV 8, day 29, IgG2a+IgG2c (mouse)116910000072600000Mouse
36049785Ars9_mantibody response to SARS-CoV 9, day 29, IgM (mouse)116910000072600000Mouse
36049786Ars10_mantibody response to SARS-CoV 10, 4 days post-rechallenge, IgG2a+IgG2c (mouse)116910000072600000Mouse
36049787Ars11_mantibody response to SARS-CoV 11, 4 days post-rechallenge, IgM (mouse)116910000072600000Mouse
36049788Ars1_mantibody response to SARS-CoV 1, day 7, IgG1 (mouse)116910000072600000Mouse
36049789Ars2_mantibody response to SARS-CoV 2, day 7, IgG2a+IgG2c (mouse)116910000072600000Mouse
36049790Ars3_mantibody response to SARS-CoV 3, day 7, IgG2b (mouse)116910000072600000Mouse
36049791Ars4_mantibody response to SARS-CoV 4, day 7, IgG3 (mouse)116910000072600000Mouse
36049792Ars5_mantibody response to SARS-CoV 5, day 7, IgM (mouse)116910000072600000Mouse
35673314Ari2_mantibody response to influenza 2, day 10, IgG3 (mouse)116910000072600000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1758
Count of miRNA genes:424
Interacting mature miRNAs:493
Transcripts:ENSMUST00000018716, ENSMUST00000101526, ENSMUST00000123817, ENSMUST00000133485, ENSMUST00000135814, ENSMUST00000138186, ENSMUST00000141231, ENSMUST00000146789, ENSMUST00000153684
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001291125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_030064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK019135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK027950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL596185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY099326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY099327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC033533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM947867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY262829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY294224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY632579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA750740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR933541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV662694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y17676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000018716   ⟹   ENSMUSP00000018716
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1169,995,777 - 70,000,009 (+)Ensembl
RefSeq Acc Id: ENSMUST00000101526   ⟹   ENSMUSP00000099064
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1169,995,876 - 70,000,009 (+)Ensembl
RefSeq Acc Id: ENSMUST00000123817
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1169,996,941 - 69,998,496 (+)Ensembl
RefSeq Acc Id: ENSMUST00000133485   ⟹   ENSMUSP00000117373
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1169,996,388 - 69,999,765 (+)Ensembl
RefSeq Acc Id: ENSMUST00000135814   ⟹   ENSMUSP00000120665
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1169,997,109 - 70,000,006 (+)Ensembl
RefSeq Acc Id: ENSMUST00000138186   ⟹   ENSMUSP00000117635
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1169,996,731 - 69,998,751 (+)Ensembl
RefSeq Acc Id: ENSMUST00000141231
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1169,995,994 - 69,998,376 (+)Ensembl
RefSeq Acc Id: ENSMUST00000146789
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1169,996,957 - 69,998,397 (+)Ensembl
RefSeq Acc Id: ENSMUST00000153684   ⟹   ENSMUSP00000121780
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1169,996,991 - 70,000,008 (+)Ensembl
RefSeq Acc Id: NM_001291125   ⟹   NP_001278054
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,886,592 - 69,890,837 (+)NCBI
GRCm381169,995,766 - 70,000,011 (+)NCBI
Celera1177,543,576 - 77,547,821 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001291126   ⟹   NP_001278055
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,887,767 - 69,890,837 (+)NCBI
GRCm381169,996,941 - 70,000,011 (+)NCBI
Celera1177,543,576 - 77,547,821 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001291127   ⟹   NP_001278056
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,888,288 - 69,890,837 (+)NCBI
GRCm381169,997,462 - 70,000,011 (+)NCBI
Celera1177,543,576 - 77,547,821 (+)NCBI
Sequence:
RefSeq Acc Id: NM_030064   ⟹   NP_084340
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,886,592 - 69,890,837 (+)NCBI
GRCm381169,995,766 - 70,000,011 (+)NCBI
MGSCv371169,809,273 - 69,813,513 (+)RGD
Celera1177,543,576 - 77,547,821 (+)NCBI
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006534501   ⟹   XP_006534564
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,887,749 - 69,890,835 (+)NCBI
GRCm381169,996,923 - 70,000,009 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006534502   ⟹   XP_006534565
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,887,753 - 69,890,835 (+)NCBI
GRCm381169,996,945 - 70,000,009 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030246427   ⟹   XP_030102287
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,887,831 - 69,890,835 (+)NCBI
GRCm381169,997,068 - 70,000,009 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030246428   ⟹   XP_030102288
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,887,768 - 69,890,835 (+)NCBI
GRCm381169,996,963 - 70,000,009 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030246429   ⟹   XP_030102289
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,887,894 - 69,890,835 (+)NCBI
GRCm381169,997,068 - 70,000,009 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036157091   ⟹   XP_036012984
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,887,830 - 69,890,835 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_084340   ⟸   NM_030064
- Peptide Label: isoform a
- UniProtKB: Q8BSN5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006534564   ⟸   XM_006534501
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006534565   ⟸   XM_006534502
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: NP_001278054   ⟸   NM_001291125
- Peptide Label: isoform b
- UniProtKB: Q8BSN5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001278055   ⟸   NM_001291126
- Peptide Label: isoform c
- UniProtKB: Q8BSN5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001278056   ⟸   NM_001291127
- Peptide Label: isoform c
- UniProtKB: Q8BSN5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030102288   ⟸   XM_030246428
- Peptide Label: isoform X3
RefSeq Acc Id: XP_030102287   ⟸   XM_030246427
- Peptide Label: isoform X3
RefSeq Acc Id: XP_030102289   ⟸   XM_030246429
- Peptide Label: isoform X3
RefSeq Acc Id: ENSMUSP00000117635   ⟸   ENSMUST00000138186
RefSeq Acc Id: ENSMUSP00000117373   ⟸   ENSMUST00000133485
RefSeq Acc Id: ENSMUSP00000099064   ⟸   ENSMUST00000101526
RefSeq Acc Id: ENSMUSP00000120665   ⟸   ENSMUST00000135814
RefSeq Acc Id: ENSMUSP00000121780   ⟸   ENSMUST00000153684
RefSeq Acc Id: ENSMUSP00000018716   ⟸   ENSMUST00000018716
RefSeq Acc Id: XP_036012984   ⟸   XM_036157091
- Peptide Label: isoform X3

Promoters
RGD ID:6821546
Promoter ID:MM_KWN:8166
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_030064,   OTTMUST00000013500,   OTTMUST00000013501,   OTTMUST00000013502,   OTTMUST00000013503,   OTTMUST00000013504,   OTTMUST00000013505,   OTTMUST00000038732,   UC007JTI.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361169,808,611 - 69,810,702 (+)MPROMDB
RGD ID:8675276
Promoter ID:EPDNEW_M15668
Type:initiation region
Name:Phf23_1
Description:Mus musculus PHD finger protein 23 , transcript variant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15669  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381169,995,850 - 69,995,910EPDNEW
RGD ID:8675278
Promoter ID:EPDNEW_M15669
Type:initiation region
Name:Phf23_2
Description:Mus musculus PHD finger protein 23 , transcript variant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15668  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381169,997,473 - 69,997,533EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1925496 AgrOrtholog
Ensembl Genes ENSMUSG00000018572 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000018716 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000099064 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000117373 UniProtKB/Swiss-Prot
  ENSMUSP00000117635 UniProtKB/TrEMBL
  ENSMUSP00000120665 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000121780 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000018716 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000101526 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000133485 UniProtKB/Swiss-Prot
  ENSMUST00000135814 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000138186 UniProtKB/TrEMBL
  ENSMUST00000153684 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.40.10 UniProtKB/Swiss-Prot
InterPro Znf_FYVE_PHD UniProtKB/Swiss-Prot
  Znf_PHD UniProtKB/Swiss-Prot
  Znf_PHD-finger UniProtKB/Swiss-Prot
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot
KEGG Report mmu:78246 UniProtKB/Swiss-Prot
MGD MGI:1925496 ENTREZGENE
NCBI Gene 78246 ENTREZGENE
Pfam PHD UniProtKB/Swiss-Prot
PhenoGen Phf23 PhenoGen
SMART PHD UniProtKB/Swiss-Prot
Superfamily-SCOP SSF57903 UniProtKB/Swiss-Prot
UniProt B0QZH9_MOUSE UniProtKB/TrEMBL
  PHF23_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q3TCH1 UniProtKB/Swiss-Prot
  Q8BT31 UniProtKB/Swiss-Prot
  Q8CDY2 UniProtKB/Swiss-Prot
  Q8CIA4 UniProtKB/Swiss-Prot
  Q8CIU8 UniProtKB/Swiss-Prot
  Q8CIU9 UniProtKB/Swiss-Prot
  Q9CWC8 UniProtKB/Swiss-Prot