Zfp957 (zinc finger protein 957) - Rat Genome Database

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Gene: Zfp957 (zinc finger protein 957) Mus musculus
Analyze
No known orthologs.
Symbol: Zfp957
Name: zinc finger protein 957
RGD ID: 1622166
MGI Page MGI
Description: Predicted to be located in nuclear body. Orthologous to human TCF20 (transcription factor 20).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AU01745; AU017455; hypothetical protein LOC105590; uncharacterized protein LOC105590
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391479,449,795 - 79,484,807 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1479,449,795 - 79,484,809 (-)EnsemblGRCm39 Ensembl
GRCm381479,212,355 - 79,247,367 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1479,212,355 - 79,247,369 (-)EnsemblGRCm38mm10GRCm38
MGSCv371479,612,162 - 79,647,174 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361477,946,510 - 77,981,451 (-)NCBIMGSCv36mm8
Celera1476,711,521 - 76,746,880 (-)NCBICelera
Cytogenetic Map14D3NCBI
cM Map1442.56NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nuclear body  (ISO)
nucleoplasm  (ISO)
nucleus  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:21873635  


Genomics

Variants

.
Variants in Zfp957
922 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:394
Count of miRNA genes:226
Interacting mature miRNAs:237
Transcripts:ENSMUST00000040802, ENSMUST00000161649, ENSMUST00000162937
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144945542583455556Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse
1301489Lbm10_mlean body mass 10 (mouse)Not determined145376129687761529Mouse
12880432Fgf23lq3_mFGF23 serum level QTL 3 (mouse)145393744087937440Mouse
10043889Cia52_mcollagen induced arthritis QTL 52 (mouse)Not determined145608238190082509Mouse
1301562Hwq1_mheart weight quantitative locus 1 (mouse)Not determined145654674590546941Mouse
1357565wrmod1_mwobbler modifier 1 (mouse)Not determined1458179640101859473Mouse
11039527Ccc2_mcolitis susceptibility in the Collaborative Cross 2 (mouse)145991861294138217Mouse
1300666Fembm2_mfemoral bone morphometry 2 (mouse)Not determined146239746096397680Mouse
14747006Mancz12_mmandible centroid size 12 (mouse)1470071977104071977Mouse
10054475Ossc3_mosteosarcoma susceptibility 3 (mouse)Not determined1470863768104863926Mouse
1300551Lprm3_mlymphoproliferation modifier 3 (mouse)Not determined1471221224105221344Mouse
1301844Pgia29_mproteoglycan induced arthritis 29 (mouse)Not determined1474352296108352384Mouse
1558819Ossc2_mosteosarcoma susceptibility 2 (mouse)Not determined1474394976108395093Mouse
14928314Manh77_mmandible shape 77 (mouse)1476767790110767790Mouse
1558823Tbbmd6_mtotal body bone mineral density 6 (mouse)Not determined1477073696111073787Mouse

Markers in Region
RH127204  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381479,223,142 - 79,223,341UniSTSGRCm38
MGSCv371479,622,949 - 79,623,148UniSTSGRCm37
Celera1476,722,637 - 76,722,836UniSTS
Cytogenetic Map14D3UniSTS
Whitehead/MRC_RH14913.12UniSTS
AU017455  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381479,212,667 - 79,212,785UniSTSGRCm38
MGSCv371479,612,474 - 79,612,592UniSTSGRCm37
Celera1476,711,833 - 76,711,951UniSTS
Cytogenetic Map14D3UniSTS
Whitehead/MRC_RH14910.46UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000040802   ⟹   ENSMUSP00000039470
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1479,449,795 - 79,461,316 (-)Ensembl
GRCm38.p6 Ensembl1479,212,355 - 79,223,876 (-)Ensembl
RefSeq Acc Id: ENSMUST00000161649   ⟹   ENSMUSP00000124930
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1479,449,795 - 79,484,807 (-)Ensembl
GRCm38.p6 Ensembl1479,212,355 - 79,247,367 (-)Ensembl
RefSeq Acc Id: ENSMUST00000162937
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1479,460,369 - 79,484,809 (-)Ensembl
GRCm38.p6 Ensembl1479,222,929 - 79,247,369 (-)Ensembl
RefSeq Acc Id: NM_001033215   ⟹   NP_001028387
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391479,449,795 - 79,484,807 (-)NCBI
GRCm381479,212,355 - 79,247,367 (-)ENTREZGENE
MGSCv371479,612,162 - 79,647,174 (-)RGD
Celera1476,711,521 - 76,746,880 (-)RGD
cM Map14 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001028387 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI51188 (Get FASTA)   NCBI Sequence Viewer  
  BAE24104 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000039470.5
  ENSMUSP00000124930
  ENSMUSP00000124930.2
Reference Protein Sequences
RefSeq Acc Id: NP_001028387   ⟸   NM_001033215
- UniProtKB: Q3UT76 (UniProtKB/TrEMBL),   B9EKX7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000039470   ⟸   ENSMUST00000040802
RefSeq Acc Id: ENSMUSP00000124930   ⟸   ENSMUST00000161649
Protein Domains
PHD-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3UT76-F1-model_v2 AlphaFold Q3UT76 1-567 view protein structure

Promoters
RGD ID:8683060
Promoter ID:EPDNEW_M19561
Type:single initiation site
Name:Zfp957_1
Description:Mus musculus zinc finger protein 957 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381479,229,631 - 79,229,691EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2145729 AgrOrtholog
Ensembl Genes ENSMUSG00000071262 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000040802.5 UniProtKB/TrEMBL
  ENSMUST00000161649 ENTREZGENE
  ENSMUST00000161649.9 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
InterPro AT_hook_DNA-bd_motif UniProtKB/TrEMBL
  EPHD UniProtKB/TrEMBL
  Znf_PHD UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
KEGG Report mmu:105590 UniProtKB/TrEMBL
MGD MGI:2145729 ENTREZGENE
NCBI Gene 105590 ENTREZGENE
PANTHER RETINOIC ACID INDUCED 1/TRANSCRIPTION FACTOR 20 UniProtKB/TrEMBL
  TRANSCRIPTION FACTOR 20 UniProtKB/TrEMBL
Pfam zf-HC5HC2H UniProtKB/TrEMBL
PhenoGen Zfp957 PhenoGen
PROSITE EPHD UniProtKB/TrEMBL
SMART AT_hook UniProtKB/TrEMBL
  PHD UniProtKB/TrEMBL
UniProt B9EKX7 ENTREZGENE, UniProtKB/TrEMBL
  Q3UT76 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Zfp957  zinc finger protein 957  AU017455  expressed sequence AU017455  Symbol and/or name change 5135510 APPROVED