F730043M19Rik (RIKEN cDNA F730043M19 gene) - Rat Genome Database

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Gene: F730043M19Rik (RIKEN cDNA F730043M19 gene) Mus musculus
Analyze
Symbol: F730043M19Rik
Name: RIKEN cDNA F730043M19 gene
RGD ID: 1621984
MGI Page MGI
Description: Is expressed in several structures, including heart; intestine; liver; lung; and metanephros.
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: PREDICTED
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391233,161,710 - 33,197,585 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1233,161,710 - 33,197,611 (-)EnsemblGRCm39 Ensembl
GRCm381233,111,711 - 33,147,586 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1233,111,711 - 33,147,597 (-)EnsemblGRCm38mm10GRCm38
MGSCv371233,796,576 - 33,832,451 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera934,199,595 - 34,203,419 (+)NCBICelera
Cytogenetic Map12A3NCBI
cM Map1214.01NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073   PMID:18799693   PMID:29716997  


Genomics

Variants

.
Variants in F730043M19Rik
1229 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:899
Count of miRNA genes:587
Interacting mature miRNAs:688
Transcripts:ENSMUST00000140105, ENSMUST00000144109, ENSMUST00000145769, ENSMUST00000148740, ENSMUST00000151637, ENSMUST00000172344
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301207Circp1_mcircadian photosensitivity 1 (mouse)Not determined12133430339Mouse
4141660Nbwa1_mNZB and NZW autoimmunity 1 (mouse)Not determined1234013434340302Mouse
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
1301163Eae16_msusceptibility to experimental allergic encephalomyelitis 16 (mouse)Not determined12772315841723301Mouse
13208568Bmiq11_mbody mass index QTL 11 (mouse)12805000040049999Mouse
1301037Cd4ts5_mCD4 T cell subset 5 (mouse)Not determined12835244442352581Mouse
1301723Fcsa7_mfemoral cross-sectional area 7 (mouse)Not determined12949100443491112Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
14746972Manh72_mmandible shape 72 (mouse)121061528144615281Mouse
10401249Bglu15_mblood glucose level 15 (mouse)Not determined121062064244620809Mouse
13524843Ppiq8_mprepulse inhibition QTL 8 (mouse)121104319450945796Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
4141516slwr_mslowlearner (mouse)Not determined1239247546392614Mouse
13524839Ppiq10_mprepulse inhibition QTL 10 (mouse)121304319554945798Mouse
10043977Obq34_mobesity QTL 34 (mouse)Not determined121514733149147331Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
26884413Bzwq9_mbi-zygomatic width QTL 9, 10 week (mouse)121615000147746783Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
15039339Nmrs29_mNAFLD-associated magnetic resonance shift 29 (mouse)121782585251825852Mouse
10043848Hdlq90_mHDL QTL 90 (mouse)Not determined121783993951840081Mouse
1300870Ath18_matherosclerosis 18 (mouse)Not determined121825996652260067Mouse
12904956Edlmmq10_mextensor digitorum longus muscle mass QTL 10 (mouse)121973983353739833Mouse
1302172Skts5_mskin tumor susceptibility 5 (mouse)Not determined122214886656149016Mouse
1301989Hdlq18_mHDL QTL 18 (mouse)Not determined122916068563160884Mouse
1300636Gct2_mgranulosa cell tumorigenesis 2 (mouse)Not determined122916068563160884Mouse
4141843Moen3_mmodifier of engrailed QTL 3 (mouse)Not determined122980158463801733Mouse
14747008Mancz10_mmandible centroid size 10 (mouse)122986352263863522Mouse

Markers in Region
MARC_13945-13946:1007583817:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381233,147,749 - 33,148,490UniSTSGRCm38
MGSCv371233,832,614 - 33,833,355UniSTSGRCm37
Celera1234,597,197 - 34,597,938UniSTS
Cytogenetic Map12A3UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000140105
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1233,161,710 - 33,197,585 (-)Ensembl
GRCm38.p6 Ensembl1233,111,711 - 33,147,586 (-)Ensembl
RefSeq Acc Id: ENSMUST00000144109
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1233,184,639 - 33,197,554 (-)Ensembl
GRCm38.p6 Ensembl1233,135,377 - 33,139,621 (-)Ensembl
RefSeq Acc Id: ENSMUST00000145769
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1233,184,642 - 33,197,596 (-)Ensembl
GRCm38.p6 Ensembl1233,134,643 - 33,147,597 (-)Ensembl
RefSeq Acc Id: ENSMUST00000148740
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1233,183,053 - 33,197,585 (-)Ensembl
GRCm38.p6 Ensembl1233,133,054 - 33,147,586 (-)Ensembl
RefSeq Acc Id: ENSMUST00000151637
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1233,175,879 - 33,196,908 (-)Ensembl
GRCm38.p6 Ensembl1233,125,880 - 33,146,909 (-)Ensembl
RefSeq Acc Id: ENSMUST00000172344
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1233,197,144 - 33,197,595 (-)Ensembl
GRCm38.p6 Ensembl1233,147,145 - 33,147,596 (-)Ensembl
RefSeq Acc Id: ENSMUST00000241999
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1233,192,188 - 33,197,603 (-)Ensembl
RefSeq Acc Id: ENSMUST00000242351
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1233,187,625 - 33,197,549 (-)Ensembl
RefSeq Acc Id: ENSMUST00000242873
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1233,188,311 - 33,197,554 (-)Ensembl
RefSeq Acc Id: ENSMUST00000243655
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1233,187,851 - 33,197,585 (-)Ensembl
RefSeq Acc Id: ENSMUST00000245085
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1233,161,712 - 33,197,611 (-)Ensembl
RefSeq Acc Id: ENSMUST00000245552
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1233,187,612 - 33,197,575 (-)Ensembl
RefSeq Acc Id: ENSMUST00000245556
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1233,161,726 - 33,197,608 (-)Ensembl
RefSeq Acc Id: NR_015602
RefSeq Status: PREDICTED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391233,161,710 - 33,197,585 (-)NCBI
GRCm381233,111,711 - 33,147,586 (-)ENTREZGENE
MGSCv371233,796,576 - 33,832,451 (-)RGD
Celera1234,560,817 - 34,597,017 (-)NCBI
Celera934,199,595 - 34,203,419 (+)NCBI
cM Map12 ENTREZGENE
Sequence:
Protein Sequences
GenBank Protein BAC40910 (Get FASTA)   NCBI Sequence Viewer  
  BAE37119 (Get FASTA)   NCBI Sequence Viewer  

Promoters
RGD ID:8678118
Promoter ID:EPDNEW_M17090
Type:single initiation site
Name:F730043M19Rik_2
Description:Mus musculus RIKEN cDNA F730043M19 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M17091  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381233,136,227 - 33,136,287EPDNEW
RGD ID:8678144
Promoter ID:EPDNEW_M17091
Type:initiation region
Name:F730043M19Rik_1
Description:Mus musculus RIKEN cDNA F730043M19 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M17090  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381233,147,583 - 33,147,643EPDNEW
RGD ID:15094106
Promoter ID:EPDNEWNC_M2000
Type:initiation region
Name:F730043M19Rik_1
Description:RIKEN cDNA F730043M19 gene [Source:MGISymbol;Acc:MGI:2443237]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381233,147,583 - 33,147,643EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000052125 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000140105 ENTREZGENE
MGD MGI:2443237 ENTREZGENE
NCBI Gene 320046 ENTREZGENE
PhenoGen F730043M19Rik PhenoGen
RNAcentral URS00009BB917 RNACentral
UniProt Q3TRB1_MOUSE UniProtKB/TrEMBL
  Q8C210_MOUSE UniProtKB/TrEMBL