9130024F11Rik (RIKEN cDNA 9130024F11 gene) - Rat Genome Database

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Gene: 9130024F11Rik (RIKEN cDNA 9130024F11 gene) Mus musculus
Analyze
Symbol: 9130024F11Rik
Name: RIKEN cDNA 9130024F11 gene
RGD ID: 1621974
MGI Page MGI
Description: Is expressed in several structures, including alimentary system; nervous system; respiratory system; sensory organ; and skeleton.
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: PREDICTED
Previously known as: B530002L08; EG329160
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39157,010,628 - 57,014,355 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl157,010,571 - 57,089,243 (+)EnsemblGRCm39 Ensembl
GRCm38156,971,469 - 56,975,196 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl156,971,412 - 57,050,084 (+)EnsemblGRCm38mm10GRCm38
MGSCv37157,028,313 - 57,032,040 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36156,916,025 - 56,984,971 (+)NCBIMGSCv36mm8
Celera157,487,078 - 57,490,857 (+)NCBICelera
Cytogenetic Map1C1.3NCBI
cM Map128.78NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14681479   PMID:16141072   PMID:16141073   PMID:17953485   PMID:18077674   PMID:20798045   PMID:21267068  
PMID:30635555   PMID:34321999  


Genomics

Variants

.
Variants in 9130024F11Rik
99 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:44
Count of miRNA genes:44
Interacting mature miRNAs:44
Transcripts:ENSMUST00000135238
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
1558717Ses1a_msalmonella enteritidis susceptibility 1a (mouse)Not determined15672692290727077Mouse
4142433Hbnr1_mHeligmosomoides bakeri nematode resistance 1 (mouse)Not determined2555019158273271Mouse
11100001Col4a1m1_mcollagen, type IV, alpha 1 modifier 1 (mouse)12555019162946882Mouse
12880409V125Dq1_mvitamin D active form serum level QTL 1 (mouse)12603916060039160Mouse
12910786Pwgrq10_mpost-weaning growth rate QTL 10 (mouse)14086800867270256Mouse
1301166Thypr2_mthymocyte proliferative response 2 (mouse)Not determined14127312475273271Mouse
1301670Ssta1_msusceptibility to Salmonella typhimurium antigens 1 (mouse)Not determined14594675579946882Mouse
4141305Tgq9_mtriglyceride QTL 9 (mouse)Not determined5142160585421605Mouse
1357505Vtbt1_mvertebral trabecular bone trait 1 (mouse)Not determined15626621490266360Mouse
1357824Estoq4_membryo survival total QTL 4 (mouse)Not determined13476013873976915Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
12910780Pwgrq11_mpost-weaning growth rate QTL 11 (mouse)14086800867270256Mouse
1301616Yaa2_mY-linked autoimmune acceleration 2 (mouse)Not determined14685469080854839Mouse
4142307Shali1_msurvival time to hyperoxic acute lung injury 1 (mouse)Not determined5196402570406589Mouse
39128207Lwq16_mliver weight QTL 16 (mouse)13476013873976915Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
1301211Bbaa11_mB.burgdorferi-associated arthritis 11 (mouse)Not determined14888900682889210Mouse
1301933Insq6_minsulin QTL 6 (mouse)Not determined15672692290727077Mouse
1357475w3q13_mweight 3 weeks QTL 13 (mouse)Not determined12310959173976915Mouse
1558822Vas1_mautoimmune vasitis resistance 1 (mouse)Not determined14888900682889210Mouse
1301225Sle7_msystematic lupus erythematosus susceptibility 7 (mouse)Not determined14685469080854839Mouse
1357741Nidd5k_mNidd5 on KK-A<y> (mouse)Not determined15597494889975057Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
1357759W3q12_mweight 3 weeks QTL 12 (mouse)Not determined13476013873976915Mouse
1357506W10q6_mweight 10 weeks QTL 6 (mouse)Not determined13476013873976915Mouse
12879917Shm3_msperm head morphology 3 (mouse)14418690462946882Mouse
1357651Lgq5_mlate growth QTL 5 (mouse)Not determined13476013873976915Mouse
1357524W6q14_mweight 6 weeks QTL 14 (mouse)Not determined13476013873976915Mouse
4141032Wbcc1_mwhite blood cell count 1 (mouse)Not determined4225966776259667Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
10043965Obq24_mobesity QTL 24 (mouse)Not determined15089021684890216Mouse
1558905Gct7_mgranulosa cell tumorigenesis 7 (mouse)Not determined14734989481350013Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1301954Lrnx11_mlearning-contextual 11 (mouse)Not determined13913280874516365Mouse
12910788Pwgrq9_mpost-weaning growth rate QTL 9 (mouse)14086800867270256Mouse
18182931Metl1_mmetabolite locus 1, pyridoxate (mouse)14127539975275399Mouse
1301430Cdcs2_mcytokine deficiency colitis susceptibility 2 (mouse)Not determined14889234582892485Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301714Vertcling_mvertical clinging (mouse)Not determined14293803176938167Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
4142467Wbcq1_mwhite blood cell quantitative locus 1 (mouse)Not determined15626621490266360Mouse
1558855Eae30_mexperimental allergic encephalomyelitis susceptibility 30 (mouse)Not determined14541777372975057Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000135238
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl157,010,571 - 57,014,360 (+)Ensembl
GRCm38.p6 Ensembl156,971,412 - 56,975,197 (+)Ensembl
RefSeq Acc Id: ENSMUST00000185204
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl157,010,639 - 57,081,674 (+)Ensembl
GRCm38.p6 Ensembl156,971,480 - 57,042,515 (+)Ensembl
RefSeq Acc Id: ENSMUST00000187858
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl157,079,552 - 57,089,243 (+)Ensembl
GRCm38.p6 Ensembl157,040,393 - 57,050,084 (+)Ensembl
RefSeq Acc Id: ENSMUST00000187927
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl157,010,637 - 57,012,767 (+)Ensembl
GRCm38.p6 Ensembl156,971,478 - 56,973,608 (+)Ensembl
RefSeq Acc Id: ENSMUST00000195462
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl157,011,491 - 57,014,352 (+)Ensembl
GRCm38.p6 Ensembl156,972,332 - 56,975,193 (+)Ensembl
RefSeq Acc Id: ENSMUST00000245366
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl157,010,640 - 57,080,097 (+)Ensembl
RefSeq Acc Id: NR_024325
RefSeq Status: PREDICTED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39157,010,628 - 57,014,355 (+)NCBI
GRCm38156,971,469 - 56,975,196 (+)NCBI
Celera157,487,078 - 57,490,857 (+)NCBI
Sequence:
RefSeq Acc Id: NR_024326
RefSeq Status: PREDICTED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39157,010,628 - 57,014,355 (+)NCBI
GRCm38156,971,469 - 56,975,196 (+)NCBI
Celera157,487,078 - 57,490,857 (+)NCBI
Sequence:
Protein Sequences
GenBank Protein EDL00044 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences

Promoters
RGD ID:6873752
Promoter ID:EPDNEW_M327
Type:multiple initiation site
Name:9130024F11Rik_1
Description:Mus musculus RIKEN cDNA 9130024F11 gene , transcript variant2, long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38156,971,469 - 56,971,529EPDNEW
RGD ID:15092126
Promoter ID:EPDNEWNC_M33
Type:multiple initiation site
Name:9130024F11Rik_1
Description:RIKEN cDNA 9130024F11 gene [Source:MGISymbol;Acc:MGI:1926150]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38156,971,469 - 56,971,529EPDNEWNC
RGD ID:6817316
Promoter ID:MM_KWN:795
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   3T3L1_Day6,   BoneMarrow_2Hour,   Brain,   ES_Cell,   Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:LINCRNA_18,   NR_024325,   NR_024326,   UC007BAT.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36157,028,526 - 57,030,567 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000087022 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000135238 ENTREZGENE
MGD MGI:1926150 ENTREZGENE
NCBI Gene 329160 ENTREZGENE
PhenoGen 9130024F11Rik PhenoGen
RNAcentral URS000075B9E7 RNACentral
  URS000075DA05 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-09-17 9130024F11Rik  RIKEN cDNA 9130024F11 gene  EG329160  predicted gene, EG329160  Symbol and/or name change 5135510 APPROVED