Gene: AA388235 (expressed sequence AA388235) Mus musculus |
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Analyze |
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Symbol: |
AA388235 |
Name: |
expressed sequence AA388235 |
RGD ID: |
1621902 |
MGI Page |
MGI |
Description: |
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Type: |
ncrna (Ensembl: lncRNA)
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RefSeq Status: |
VALIDATED |
Latest Assembly: |
GRCm39 - Mouse Genome Assembly GRCm39 |
Position: |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 17 | 34,200,466 - 34,204,332 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 17 | 34,200,468 - 34,201,751 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 17 | 33,981,492 - 33,985,358 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 17 | 33,981,494 - 33,982,777 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 17 | 34,118,437 - 34,122,303 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 17 | 33,591,946 - 33,595,812 (+) | NCBI | | MGSCv36 | mm8 | | MGSCv36 | 17 | 33,092,555 - 33,096,425 (+) | NCBI | | MGSCv36 | mm8 | | Cytogenetic Map | 17 | B1 | NCBI | | | | | cM Map | 17 | 17.98 | NCBI | | | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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References
Additional References at PubMed
Genomics
QTLs in Region (GRCm39)
13452399 | Leusq6_m | leucocytosis susceptibility QTL 6 (mouse) | | | | | 17 | 17462208 | 51462345 | Mouse | 10412204 | Bbaa29_m | B.burgdorferi-associated arthritis 29 (mouse) | | | Not determined | | 17 | 26051185 | 60051352 | Mouse | 1302005 | Loco2_m | locomotor activity 2 (mouse) | | | Not determined | | 17 | 26884972 | 60885114 | Mouse | 1300692 | Blmpf1_m | bleomycin-induced pulmonary fibrosis 1 (mouse) | | | Not determined | | 17 | 32061652 | 37644775 | Mouse | 1300535 | Char3_m | P. chabaudi malaria resistance QTL 3 (mouse) | | | Not determined | | 17 | 17462208 | 51462345 | Mouse | 1301331 | Lbw1_m | lupus NZB x NZW 1 (mouse) | | | Not determined | | 17 | 18418357 | 52420983 | Mouse | 4141272 | Tfv1_m | total food volume 1 (mouse) | | | Not determined | | | 4854752 | 65637357 | Mouse | 13452396 | Leusq3_m | leucocytosis susceptibility QTL 3 (mouse) | | | | | 17 | 17462208 | 51462345 | Mouse | 10412198 | Sst5_m | susceptibility to tuberculosis 5 (mouse) | | | Not determined | | 17 | 25076583 | 55712970 | Mouse | 1300602 | Eye2_m | eye weight 2 (mouse) | | | Not determined | | 17 | 26505337 | 41105037 | Mouse | 4141357 | Mrdq1_m | modifier of retinal degeneration QTL 1 (mouse) | | | Not determined | | | 30987903 | 48039703 | Mouse | 10043949 | Pbft7_m | percent body fat 7 (mouse) | | | Not determined | | 17 | 6893936 | 40893936 | Mouse | 4142150 | Stheal11_m | soft tissue heal 11 (mouse) | | | Not determined | | 17 | 12286211 | 83361768 | Mouse | 11081168 | Tir7_m | trypanosome infection response 7 (mouse) | | | | | 17 | 14123372 | 48123496 | Mouse | 1302152 | Skull25_m | skull morphology 25 (mouse) | | | Not determined | | 17 | 16819721 | 50819843 | Mouse | 15039348 | Nmrs37_m | NAFLD-associated magnetic resonance shift 37 (mouse) | | | | | 17 | 27815209 | 61815209 | Mouse | 12904946 | Tammq8_m | tibialis anterior muscle mass QTL 8 (mouse) | | | | | 17 | 12451787 | 46451787 | Mouse | 1300995 | Fembrs4_m | femur breaking strength 4 (mouse) | | | Not determined | | 17 | 15061652 | 49061760 | Mouse | 1300914 | Pcir4_m | periosteal circumference 4 (mouse) | | | Not determined | | 17 | 15061652 | 49061760 | Mouse | 1302140 | Wta4_m | weight adult 4 (mouse) | | | Not determined | | 17 | 16819721 | 50819843 | Mouse | 1301056 | Pas2_m | pulmonary adenoma susceptibility 2 (mouse) | | | Not determined | | 17 | 18422141 | 52424327 | Mouse | 15039354 | Nmrs36_m | NAFLD-associated magnetic resonance shift 36 (mouse) | | | | | 17 | 19145025 | 53145025 | Mouse | 1301454 | Eae5_m | susceptibility to experimental allergic encephalomyelitis 5 (mouse) | | | Not determined | | 17 | 24612750 | 58612864 | Mouse | 1302189 | Dps3_m | delta power in slow-wave sleep 3 (mouse) | | | Not determined | | 17 | 33819721 | 36250180 | Mouse | 1302028 | Asbb3_m | autoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse) | | | Not determined | | 17 | 10878119 | 44878219 | Mouse | 1302070 | Tbbmd7_m | total body bone mineral density 7 (mouse) | | | Not determined | | 17 | 15061652 | 49061760 | Mouse | 25394538 | Skmw84_m | skeletal muscle weight 84, TA (mouse) | | | | | 17 | 32660426 | 35520036 | Mouse | 1300706 | Alan1_m | alloantigen response 1 (mouse) | | | Not determined | | 17 | 4854752 | 46469702 | Mouse | 1301840 | Ssial4_m | susceptibility to sialadenitiss 4 (mouse) | | | Not determined | | 17 | 18175412 | 52178214 | Mouse | 11075105 | Modc1_m | modifier of Odc1 (mouse) | | | | | 17 | 27715792 | 45622654 | Mouse | 1300589 | Myaa2_m | modifier of Yaa 2 (mouse) | | | Not determined | | 17 | 30132555 | 64132666 | Mouse | 1558886 | Lgth9_m | body length 9 (mouse) | | | Not determined | | 17 | 15061652 | 49061760 | Mouse | 1558758 | Kcal2_m | kilocalorie 2 (mouse) | | | Not determined | | 17 | 26401012 | 52911704 | Mouse | 10045977 | Tir9_m | trypanosome infection response 9 (mouse) | | | Not determined | | 17 | 27878119 | 43885114 | Mouse | 26884379 | Skwq5_m | skull length QTL 5, 5 week (mouse) | | | | | 17 | 33118974 | 54107028 | Mouse | 10412214 | Sxbq3_m | SGC/Knj cross B6 QTL 3 (mouse) | | | Not determined | | 17 | 17462208 | 51462345 | Mouse | 4142342 | Lfnq4_m | lung function QTL 4 (mouse) | | | Not determined | | | 11206484 | 39364059 | Mouse | 1301935 | Skull24_m | skull morphology 24 (mouse) | | | Not determined | | 17 | 8584914 | 42585149 | Mouse | 1300890 | Bhr3_m | bronchial hyperresponsiveness 3 (mouse) | | | Not determined | | 17 | 3974890 | 48866091 | Mouse | 1357789 | Kdnw3_m | kidney weight 3 (mouse) | | | Not determined | | 17 | 4854752 | 47885665 | Mouse | 4141067 | Hbnr2_m | Heligmosomoides bakeri nematode resistance 2 (mouse) | | | Not determined | | | 11885971 | 45886119 | Mouse | 11038694 | Pas19_m | pulmonary adenoma susceptibility 19 (mouse) | | | | | 17 | 29711164 | 34754437 | Mouse | 13524847 | Asrq8a_m | acoustic startle response 8a (mouse) | | | | | 17 | 12646961 | 46646961 | Mouse | 1301338 | Lmr1_m | leishmaniasis resistance 1 (mouse) | | | Not determined | | 17 | 10081340 | 86996400 | Mouse | 10412196 | Bbaa28_m | B.burgdorferi-associated arthritis 28 (mouse) | | | Not determined | | 17 | 25584914 | 43976235 | Mouse | 1300703 | Uvbi2_m | UVB induced immunosuppression 2 (mouse) | | | Not determined | | 17 | 28622406 | 62622654 | Mouse | 4140955 | Plgr1_m | plague resistance locus 1 (mouse) | | | Not determined | | | 31033500 | 65033630 | Mouse | 10412276 | Leci2_m | leukocyte endothelial cell interactions 2 (mouse) | | | Not determined | | 17 | 3348175 | 37348299 | Mouse | 4141215 | Mnic1_m | macronutrient intake, carbohydrate 1 (mouse) | | | Not determined | | | 4854752 | 45670266 | Mouse | 1300787 | Cd8mts5_m | CD8 memory T cell subset 5 (mouse) | | | Not determined | | 17 | 8584914 | 42585149 | Mouse | 14747010 | Mancz14_m | mandible centroid size 14 (mouse) | | | | | 17 | 11998184 | 45998184 | Mouse | 10412083 | Sm2_m | susceptibility to Schistosoma mansoni infection 2 (mouse) | | | Not determined | | 17 | 17029943 | 51030078 | Mouse | |
Markers in Region
UniSTS:237635 |
Mouse Assembly | Chr | Position (strand) | Source | JBrowse |
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GRCm38 | 17 | 33,981,549 - 33,981,793 | UniSTS | GRCm38 | MGSCv37 | 17 | 34,118,494 - 34,118,738 | UniSTS | GRCm37 | Cytogenetic Map | 17 | B1 | UniSTS | |
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D17Mit28 |
Mouse Assembly | Chr | Position (strand) | Source | JBrowse |
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GRCm38 | 17 | 34,000,916 - 34,001,035 | UniSTS | GRCm38 | MGSCv37 | 17 | 34,137,861 - 34,137,980 | UniSTS | GRCm37 | Celera | 17 | 36,746,317 - 36,746,436 | UniSTS | | Celera | 17 | 35,760,297 - 35,760,400 | UniSTS | | Cytogenetic Map | 17 | B1 | UniSTS | | cM Map | 17 | 18.44 | UniSTS | | Whitehead Genetic | 17 | 7.7 | UniSTS | |
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UniSTS:487919 |
Mouse Assembly | Chr | Position (strand) | Source | JBrowse |
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Cytogenetic Map | 17 | B1 | UniSTS | | Cytogenetic Map | 2 | E5 | UniSTS | |
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Expression
Sequence
RefSeq Acc Id: |
ENSMUST00000235802 |
Type: |
CODING |
Position: |
Mouse Assembly | Chr | Position (strand) | Source |
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GRCm39 Ensembl | 17 | 34,200,468 - 34,201,751 (+) | Ensembl | GRCm38.p6 Ensembl | 17 | 33,981,494 - 33,982,777 (+) | Ensembl |
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RefSeq Acc Id: |
NR_033305 |
RefSeq Status: |
VALIDATED |
Type: |
NON-CODING |
Position: |
Mouse Assembly | Chr | Position (strand) | Source |
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GRCm39 | 17 | 34,200,466 - 34,204,332 (+) | NCBI | GRCm38 | 17 | 33,981,492 - 33,985,358 (+) | ENTREZGENE | MGSCv37 | 17 | 34,118,437 - 34,122,303 (+) | RGD | cM Map | 17 | | ENTREZGENE |
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Sequence: |
TCTCGCTGGCATCTCTCTGGCTCTGCGCGCCTTGCGCTCTCTCGCTGCCTAAAGATGTAACAAT AGGACTCGGCGCTCTGGCGCGCCCTCGCTCTCCCGCGCGCTCTGGCGCTCTGGCCCCATAAAGA TGTAAGCAATAAAGCTTTGCCGCAGAAGATTCTGGTTGTTGTGTTCTTCCTGGCCGGGTGTGAG AGAACGCGTTTGTAACAGTTCCTGTTGCAGAGGATCCAGGGTGAGTTCCATCAGCACATGGTGG CTGTCAACCATCTGCAACTTCAGTTCCCAGGGATCGAATGCTAGTGCTAGTGCACATACATATT CACATACAAAAATGATTACATCTCATGACAATAAAATTTTAAAAATATGATTTGAAAAATACTC CTTCTCTTTCTCCTACACATCCAGAGTGTGAGGACAGGAGTGGAGGGCACAGGAATGTTTGGAC ATCACTGTCCCACCAGCCAATGAAGAGCGCTCTGTAACAGGACAGGAAAAGATGGTTGAAATAG AGTGTATTGAAATGACAATTTGTCAAAAAGCATAAAATTAAAAATACAGATGATATTTCATTTT ATGAACCTACCATGCCCAGTGGGTCACAGCCTCATCCCAGGAAGAAGACACAGTGTGTGCTCAT CTTTGCACTTGAGCTGATGTGAGTTTTTGATTCCCTATGAACAAGATAAATTCGACTCAGACGT TTGAATGCTAATTTGTAACAGCCCATGACATCCCAACATCCAGAGCATTCCTGCAGAGAAAGGT GTCCCCTTTCCCATCTTCCCTCCCACTGCAGACCCTCCAGAGTCTCACCTGTTGAAGATGAAAG AGAAGCATCGCATTCTTGGGCAACAGCGCCGCCTGGTGGAAGAAACAAAGAGGACAGCGTCTGA ACCCACAGAGCTGAGGGTAAAGGGGATCCAGGCTGCTGAGCTGCCCCAGGGCCTCCTTCCTATC TGCACTTCTCCAGGGCTCTCAGGTCTCAGGCCGCCCTGCTCTCATCAAACTACATCCAGAAGAA CTTTACGTGCTTTTCCAGCCGTGGGAAGAAAACTCCCTGTAAGAGGGGAGGCAGGAGGCAGAGC CATGGGTGCTAAAAGGAGCTGCAAAGCCCCAGAGAGCAGTTCCAGAACTCGGACAGGGACCATG GTGATGATTCTTTGATGTCAGCTACATGTGGGGTTAACTAAAACCTCAAAATGGAGGGCAGCAT CTGTGAGGTGTTTTTGCTTAATTTGAAGTGTGAAAATCAATTTCTGATCCTTTTCTTTGAGGTA GGAAGACACAGGTGTAAACCAGAATATTTGAGCAGGAGCCCCTCCCACTTTTTGCTCTGGGCCA TGACTTCTGCTGGAAGCCTACATGAAGACCTGGAAGAAGGAAAGGCTTGCTCTGTGTCTGCTTG CTCTTCTGGTTTCTACAGTTGCTGATTCAGGCATGGTGTTTCCCTACTGAGAGGACTGGACTGT ACCTGCTGGTTCCTGTATGGGGTCTGCTGGCCAAGAAGTCTGGACTGAAGCTGTTGATTCGTAT TTGGTGTTTGCCATGGGACTGAACTGCTGACAAAGAAAATTGAGCTTGCCCCCCAAAAGCTATT GTTAAACAGGTCCACTTCCCCCATATCTAAATAACTTTTCTCTTCCACTACCTCTTCTGGATTG TGAGCAAAAGGAGAGGCTAAACATTTTGTTATTATTATTTATTATTATTACCATTATTATTATT ATTAAAACTATCTTTCTTTCTCCCCCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC TTTCTTTCTCTCTCTCTCTCTTTCTTTCTTTTTTCGAGACAGGGTTCTCTGTATAGCCCTGACT GTCCTGGAACTCACTTTGTAGACCAGCTGGCCTCAAACTCAGACGTCTGCCTGCCTCTGCCTCC CAAGGGCTTGGATTAAAGGCGTGTGCCACCAATGCCTGGCCAGATAGTAGAGAAAGAACGACTG AGAGAAAAAGAGAGAGAGAAACCCCAGAATCTAATCTCCTTCCCTTTGTTTGCTCCATGACCAG AACCTTTAAGATCTTGTGACCACTGCTACTTATTCTACACCCACTCAACAACCACATACCTACC ACCCCACTCTTGGGAATGAGGGCTTAGTGTGTATAAAATTGTTTCCCGCTTTCTGGGAATGATG ATATCTCTCAGGGGCACCAAGGCAATGAGGATAATGGTCAAGTCCTAAGAAAGCAAGCTGTAAC ATTTGCTGTGCATTCGCTGTGTGCTAGGAAGGTGCAGGGCTTAGCTGAATCCTTGGGTGGGGCA GTCTTTGAGGCTGCAAGATTAGCTATTTTGAAGTTGTTCTGGATGCATAATTTTGAGGGGCCAG CCATTAAGGCAGTTTGAGGTTGGATCATTTAGGCTATTTGTCTTGTCTTCTTTGGTGTCTGGTC CTTTCTCTGTAAACACACAAACTTTTATAGGTGATATGCATTTCTACATTAACACATGTATGGA ATGTACAGTGTGCACAGAGCTTTATAACTCTGTTTGCGCTATATACTCAAGCTGCAATATAAAT ATCCACTTGTGCCACATGAAAGGATAACCTCATAAGTCATGTGGACTTTGTAGCCAACAAGATT TATTGGACATGAATAGCTGACATCCTGGCTGGAGACATTCCATTCTTGGCCTTCTTCATAGCTG TTTCCACATAGAGGGATGAGAATTCATGTTTTGTTTAGTTTTGTTGATCTGCTTGTTGTCTTCA TTTTTGCAGCCAAGATTTTCAGGATGTCTCCTCTGGTCAAATCTCATCTTTATGAATTTTGAAG GAAGTTATAGCTTTACTTTTCATGTTGAAACAAAGGCAAACCATTTCCCTGAACTCAACACATT TCCTTCCTTCCATTCTGAGGTTCTCACATATGTGCGCCAATCGAATCCAACAGTCCTTTCTCAA CTCCAGGGTTGTTCAGCAGCTGTGTTACCTGTCTCTAGACCTATAACCAGACTTCAGACAAAGT AGATTCCAGGAGGGAAGGTGGAGTGTGTAGTCCATGAGGAGTAACCCTGCACTTCTGTGCACTC ATGTAAGGAGCTTGACGAGTTTGCTAATTCATTAAGTAGCATGTGGGGAACATGTGTGGGAATG GATTCTGAGGGTGTGGGATAATAGTGGAAGGAACATAAAACTGGGTCAGGCTGAGTTTTTTGAC ATGGGTCCACTGTGTAAAGATTGTAGCTTTAGTATGGAAGATTTCACATTTTAAAAAGTTGTCA AGACTGTGTTTGAATCTTTAGCTGAAGTGGTTATGGAAAGATGGTCTACTGAAAAGGAGTTGAA GATGTCTAATATGTCTTGGCTTAGTGTTGATGGAGGGATTTACAGCTGAGGGAATATGCAATGG TGGAGTGGTCATGCTGTGTGAAACCTAATTCTTTAGCCATGGGACAGCCCAGAAGACACGCCCT TCACTGATCATATAAGGCACAAAATGTTGAGAGGGCACCAGCACATTTGAAGAGCTTTGTCGTC GTCCTTTTCCTTGTGCAGACCTTAGGGTTGGAGATCCTGCTGCTGCTGAATTGAATGAATTAAA TGCAGTGGGTTTAATTCTCAACAGCGCCCAATTGCCAAAGGCAGGGTGATTGTAATTACCACAA TGGGAAGCAGAGACAACATAATGTCCACAGTGGACTGCCCTACCCAGAATGGTCATCTCTGGCA GCATGAATTTTATAGTGTCTTGACTCCCAAGGAACTTTGGTCGTAGCTAATTAACTATGGTGTT TCTATGCATGAAATACATAAGAAAATGTCTTAGTCATTGTTGTATTGCTGTGAGGAGACATCAT AAACAAATAAAAACACATTTAAAAATC
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Additional Information
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