D6Ertd527e (DNA segment, Chr 6, ERATO Doi 527, expressed) - Rat Genome Database
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Gene: D6Ertd527e (DNA segment, Chr 6, ERATO Doi 527, expressed) Mus musculus
Analyze
Symbol: D6Ertd527e
Name: DNA segment, Chr 6, ERATO Doi 527, expressed
RGD ID: 1621564
MGI Page MGI
Description: INTERACTS WITH cadmium atom; cadmium dichloride; crocidolite asbestos
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AU043841; hypothetical protein LOC52372; mucin-21; uncharacterized protein LOC52372
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39687,074,108 - 87,089,985 (+)NCBIGRCm39mm39
GRCm39 Ensembl687,081,728 - 87,089,979 (+)Ensembl
GRCm38687,097,125 - 87,113,003 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl687,104,746 - 87,112,997 (+)EnsemblGRCm38mm10GRCm38
MGSCv37687,054,740 - 87,062,997 (+)NCBIGRCm37mm9NCBIm37
MGSCv36687,070,382 - 87,078,637 (+)NCBImm8
Celera689,043,866 - 89,052,126 (+)NCBICelera
Cytogenetic Map6D1NCBI
cM Map637.9NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10725249   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073  


Genomics

Position Markers
AU043841  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38687,112,751 - 87,112,924UniSTSGRCm38
MGSCv37687,062,745 - 87,062,918UniSTSGRCm37
Celera689,051,874 - 89,052,047UniSTS
Cytogenetic Map6D1UniSTS
cM Map635.5UniSTS
Whitehead/MRC_RH6896.2UniSTS
D6Ertd527e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38687,112,741 - 87,112,963UniSTSGRCm38
MGSCv37687,062,735 - 87,062,957UniSTSGRCm37
Celera689,051,864 - 89,052,086UniSTS
Cytogenetic Map6D1UniSTS
cM Map635.5UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487426034Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
1300618Pgia19_mproteoglycan induced arthritis 19 (mouse)Not determined64531405987426034Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5437342788379171Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
1301571Arrd1_mage-related retinal degeneration 1 (mouse)Not determined67554435692607450Mouse
1300674Nidd3n_mnon-insulin-dependent diabetes mellitus 3 in NSY (mouse)Not determined67554435694225955Mouse
10412195Efw_mepididymal fat weight (mouse)Not determined67554435694225955Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
14697704Stsl4_mSalmonella typhimurium susceptibility locus 4 (mouse)67710000090000000Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67800000097000000Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681500000102200000Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684122513118122513Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686806805113544602Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:137
Count of miRNA genes:134
Interacting mature miRNAs:137
Transcripts:ENSMUST00000170124
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000170124   ⟹   ENSMUSP00000130803
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl687,104,746 - 87,112,940 (+)Ensembl
RefSeq Acc Id: ENSMUST00000203725
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl687,104,782 - 87,111,407 (+)Ensembl
RefSeq Acc Id: ENSMUST00000203747   ⟹   ENSMUSP00000144761
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl687,104,748 - 87,112,997 (+)Ensembl
RefSeq Acc Id: ENSMUST00000204927   ⟹   ENSMUSP00000145529
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl687,104,748 - 87,112,996 (+)Ensembl
RefSeq Acc Id: ENSMUST00000205257
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl687,104,813 - 87,111,399 (+)Ensembl
RefSeq Acc Id: NM_001167937   ⟹   NP_001161409
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39687,081,728 - 87,089,985 (+)NCBI
GRCm38687,104,746 - 87,113,003 (+)NCBI
MGSCv37687,054,740 - 87,062,997 (+)RGD
Celera689,043,866 - 89,052,126 (+)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001167938   ⟹   NP_001161410
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39687,081,728 - 87,089,985 (+)NCBI
GRCm38687,104,746 - 87,113,003 (+)NCBI
MGSCv37687,054,740 - 87,062,997 (+)RGD
Celera689,043,866 - 89,052,126 (+)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006506367   ⟹   XP_006506430
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39687,074,108 - 87,089,981 (+)NCBI
GRCm38687,097,125 - 87,112,999 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006506368   ⟹   XP_006506431
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39687,074,108 - 87,089,981 (+)NCBI
GRCm38687,097,125 - 87,112,999 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017321675   ⟹   XP_017177164
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39687,080,985 - 87,089,981 (+)NCBI
GRCm38687,104,002 - 87,112,999 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001161409   ⟸   NM_001167937
- Peptide Label: isoform a
- UniProtKB: A0A0N4SWI3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001161410   ⟸   NM_001167938
- Peptide Label: isoform b
- UniProtKB: F7D6F6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006506430   ⟸   XM_006506367
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006506431   ⟸   XM_006506368
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017177164   ⟸   XM_017321675
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSMUSP00000130803   ⟸   ENSMUST00000170124
RefSeq Acc Id: ENSMUSP00000144761   ⟸   ENSMUST00000203747
RefSeq Acc Id: ENSMUSP00000145529   ⟸   ENSMUST00000204927


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000090891 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000130803 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000144761 UniProtKB/TrEMBL
  ENSMUSP00000145529 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000170124 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000203747 UniProtKB/TrEMBL
  ENSMUST00000204927 ENTREZGENE, UniProtKB/TrEMBL
KEGG Report mmu:52372 UniProtKB/TrEMBL
MGD MGI:1261919 ENTREZGENE
NCBI Gene 52372 ENTREZGENE
PhenoGen D6Ertd527e PhenoGen
UniProt A0A0N4SUP2_MOUSE UniProtKB/TrEMBL
  A0A0N4SWI3 ENTREZGENE, UniProtKB/TrEMBL
  B2RXP9_MOUSE UniProtKB/TrEMBL
  F7D6F6 ENTREZGENE, UniProtKB/TrEMBL