Rassf1 (Ras association (RalGDS/AF-6) domain family member 1) - Rat Genome Database
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Gene: Rassf1 (Ras association (RalGDS/AF-6) domain family member 1) Mus musculus
Analyze
Symbol: Rassf1
Name: Ras association (RalGDS/AF-6) domain family member 1
RGD ID: 1621553
MGI Page MGI
Description: Predicted to have identical protein binding activity and protein N-terminus binding activity. Predicted to be involved in several processes, including negative regulation of cell cycle; positive regulation of protein ubiquitination; and protein stabilization. Predicted to localize to microtubule cytoskeleton and nucleus. Is expressed in liver and metanephros. Human ortholog(s) of this gene implicated in breast cancer; reproductive organ cancer (multiple); transitional cell carcinoma; and urinary system cancer (multiple). Orthologous to human RASSF1 (Ras association domain family member 1); PARTICIPATES IN p53 signaling pathway; non-small cell lung carcinoma pathway; urinary bladder cancer pathway; INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 123F protein; 123F2; AA536941; AU044980; NO; NORE2A; Ra; Ras; Ras association (RalGDS/AF-6) domain family 1; ras association domain-containing protein 1; Rassf1A; RASSF1A tumor suppressor; Rassf1B; Rassf1C; RDA; RDA32; REH3P; REH3P21
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399107,428,633 - 107,439,466 (+)NCBIGRCm39mm39
GRCm389107,551,434 - 107,562,267 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9107,551,555 - 107,562,267 (+)EnsemblGRCm38mm10GRCm38
MGSCv379107,456,987 - 107,464,591 (+)NCBIGRCm37mm9NCBIm37
MGSCv369107,412,757 - 107,420,361 (+)NCBImm8
Celera9107,163,421 - 107,171,009 (+)NCBICelera
Cytogenetic Map9F1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-colchicine  (ISO)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4-diaminotoluene  (EXP)
2,4-dinitrotoluene  (ISO)
2-acetamidofluorene  (ISO)
2-methylcholine  (ISO)
3-chloropropane-1,2-diol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-methylcholanthrene  (ISO)
4-hydroxyphenyl retinamide  (EXP)
5-aza-2'-deoxycytidine  (ISO)
acetamide  (ISO)
aflatoxin B1  (EXP,ISO)
amphetamine  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
asbestos  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzophenanthridine  (ISO)
bexarotene  (EXP)
bisphenol A  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (EXP)
chrysene  (EXP)
cisplatin  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dextran sulfate  (EXP)
diarsenic trioxide  (ISO)
diazinon  (ISO)
dibutyl phthalate  (EXP)
dioxygen  (EXP)
doxorubicin  (ISO)
elemental selenium  (ISO)
ethanol  (EXP)
ethyl methanesulfonate  (ISO)
etoposide  (ISO)
fluoranthene  (EXP)
folic acid  (EXP,ISO)
furan  (EXP,ISO)
gentamycin  (ISO)
glycidol  (ISO)
hydrogen chloride  (ISO)
indole-3-methanol  (ISO)
indometacin  (ISO)
isoprenaline  (ISO)
menadione  (ISO)
methapyrilene  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
mitomycin C  (ISO)
N-nitrosodiethylamine  (ISO)
nickel atom  (EXP)
nickel subsulfide  (ISO)
orphenadrine  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
phenobarbital  (EXP)
phenylephrine  (EXP,ISO)
procainamide  (ISO)
propiconazole  (EXP)
quercetin  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
Soman  (ISO)
succimer  (EXP)
sunitinib  (ISO)
T-2 toxin  (ISO)
tamoxifen  (EXP)
tetrachloromethane  (EXP)
thioacetamide  (ISO)
titanium dioxide  (EXP)
trichostatin A  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vincaleukoblastine  (ISO)
vincristine  (ISO)
vinyl carbamate  (EXP)
vitamin E  (ISO)
zearalenone  (ISO)
zinc atom  (EXP)
zinc(0)  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11085536   PMID:11217851   PMID:11333291   PMID:11544199   PMID:11965544   PMID:12466851  
PMID:12477932   PMID:14610273   PMID:15489334   PMID:15665283   PMID:15753381   PMID:15782199   PMID:16135822   PMID:16140931   PMID:16141072   PMID:16141073   PMID:17335777   PMID:17379520  
PMID:18270576   PMID:18391979   PMID:18566590   PMID:18596699   PMID:18772348   PMID:18799693   PMID:19223555   PMID:19335548   PMID:19618401   PMID:19652091   PMID:20360068   PMID:20890045  
PMID:20890300   PMID:21097531   PMID:21267068   PMID:21873635   PMID:22710434   PMID:24146755   PMID:24579805   PMID:24776599   PMID:24813943   PMID:25133424   PMID:25218637   PMID:25368379  
PMID:26410627   PMID:26496610   PMID:26980762   PMID:27765918   PMID:29382819   PMID:29735543   PMID:30315205   PMID:30571844   PMID:30951700   PMID:31086178   PMID:31311858  


Genomics

Comparative Map Data
Rassf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399107,428,633 - 107,439,466 (+)NCBIGRCm39mm39
GRCm389107,551,434 - 107,562,267 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9107,551,555 - 107,562,267 (+)EnsemblGRCm38mm10GRCm38
MGSCv379107,456,987 - 107,464,591 (+)NCBIGRCm37mm9NCBIm37
MGSCv369107,412,757 - 107,420,361 (+)NCBImm8
Celera9107,163,421 - 107,171,009 (+)NCBICelera
Cytogenetic Map9F1NCBI
RASSF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl350,329,782 - 50,340,980 (-)EnsemblGRCh38hg38GRCh38
GRCh38350,329,786 - 50,340,836 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37350,367,217 - 50,378,367 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36350,342,221 - 50,353,371 (-)NCBINCBI36hg18NCBI36
Build 34350,342,220 - 50,353,371NCBI
Celera350,340,051 - 50,351,201 (-)NCBI
Cytogenetic Map3p21.31NCBI
HuRef350,422,848 - 50,433,998 (-)NCBIHuRef
CHM1_1350,319,475 - 50,330,627 (-)NCBICHM1_1
Rassf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.08116,307,149 - 116,318,289 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8116,307,141 - 116,318,289 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08115,663,409 - 115,674,549 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48112,798,863 - 112,810,004 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18112,822,246 - 112,829,459 (+)NCBI
Celera8107,531,445 - 107,542,731 (+)NCBICelera
Cytogenetic Map8q32NCBI
Rassf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555322,132,822 - 2,142,106 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555322,132,892 - 2,142,106 (-)NCBIChiLan1.0ChiLan1.0
RASSF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1351,491,548 - 51,502,386 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl351,491,548 - 51,502,392 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0350,255,897 - 50,267,042 (-)NCBIMhudiblu_PPA_v0panPan3
RASSF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2039,014,666 - 39,022,585 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12039,014,639 - 39,023,393 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Rassf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365291,857,177 - 1,866,198 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RASSF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1332,816,154 - 32,825,369 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11332,816,156 - 32,825,486 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21335,994,689 - 36,003,831 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RASSF1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12211,716,969 - 11,728,646 (-)NCBI
ChlSab1.1 Ensembl2211,716,918 - 11,725,027 (-)Ensembl
Rassf1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247304,181,207 - 4,190,603 (-)NCBI

Position Markers
AU044980  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389107,561,906 - 107,562,070UniSTSGRCm38
MGSCv379107,464,237 - 107,464,401UniSTSGRCm37
Celera9107,170,648 - 107,170,812UniSTS
Cytogenetic Map9F1UniSTS
Whitehead/MRC_RH91108.91UniSTS
RH124504  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389107,562,096 - 107,562,183UniSTSGRCm38
MGSCv379107,464,427 - 107,464,514UniSTSGRCm37
Cytogenetic Map9F1UniSTS
Rassf1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9F1UniSTS
cM Map9 UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959990000109260000Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974368177108368325Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975775364114474379Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975775364114474379Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976535936110536130Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978640645112640755Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979397810113397888Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981798268115798392Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982910333116910428Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982910333116910428Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982910333116910428Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984528818118528921Mouse
10412180Msam3_mmuscle, skeletal, activity measure 3 (mouse)Not determined985897510108641186Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986230401120230530Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986239845120289624Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986748483120748483Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989977005118938021Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
11081166Psl5_mpromotion susceptibility QTL 5 (mouse)994981301112872929Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9101060861124595110Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9102000187124595110Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9102000187124595110Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103289445124595110Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103289445124595110Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103289445124595110Mouse

miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Mir181b-2mmu-miR-181b-5pOncomiRDBexternal_infoNANA21352471
Mir181b-1mmu-miR-181b-5pOncomiRDBexternal_infoNANA21352471
Mir181a-2mmu-miR-181a-5pOncomiRDBexternal_infoNANA21352471
Mir181dmmu-miR-181d-5pOncomiRDBexternal_infoNANA21352471
Mir181a-1mmu-miR-181a-5pOncomiRDBexternal_infoNANA21352471
Mir181cmmu-miR-181c-5pOncomiRDBexternal_infoNANA21352471

Predicted Target Of
Summary Value
Count of predictions:2200
Count of miRNA genes:554
Interacting mature miRNAs:674
Transcripts:ENSMUST00000010211, ENSMUST00000093786, ENSMUST00000121635, ENSMUST00000122225, ENSMUST00000125080, ENSMUST00000125386, ENSMUST00000129320, ENSMUST00000144129, ENSMUST00000156198
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001243748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_019713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF132851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF333027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK043204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL672219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC002173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC052760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY106916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD564987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ156337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX224234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU314810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000010211   ⟹   ENSMUSP00000010211
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,554,583 - 107,562,263 (+)Ensembl
RefSeq Acc Id: ENSMUST00000093786   ⟹   ENSMUSP00000091301
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,551,555 - 107,562,267 (+)Ensembl
RefSeq Acc Id: ENSMUST00000121635
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,556,611 - 107,562,263 (+)Ensembl
RefSeq Acc Id: ENSMUST00000122225   ⟹   ENSMUSP00000113252
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,551,567 - 107,562,263 (+)Ensembl
RefSeq Acc Id: ENSMUST00000125080
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,551,562 - 107,554,506 (+)Ensembl
RefSeq Acc Id: ENSMUST00000125386
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,557,935 - 107,561,838 (+)Ensembl
RefSeq Acc Id: ENSMUST00000129320
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,557,942 - 107,560,435 (+)Ensembl
RefSeq Acc Id: ENSMUST00000144129
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,556,743 - 107,562,263 (+)Ensembl
RefSeq Acc Id: ENSMUST00000156198   ⟹   ENSMUSP00000117722
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,551,590 - 107,562,263 (+)Ensembl
RefSeq Acc Id: ENSMUST00000191832
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,555,376 - 107,557,800 (+)Ensembl
RefSeq Acc Id: NM_001243748   ⟹   NP_001230677
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,428,754 - 107,439,466 (+)NCBI
GRCm389107,551,555 - 107,562,267 (+)ENTREZGENE
Celera9107,160,318 - 107,171,016 (+)ENTREZGENE
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_019713   ⟹   NP_062687
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,431,782 - 107,439,466 (+)NCBI
GRCm389107,554,583 - 107,562,267 (+)NCBI
MGSCv379107,456,987 - 107,464,591 (+)RGD
Celera9107,160,318 - 107,171,016 (+)ENTREZGENE
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006511770   ⟹   XP_006511833
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,428,633 - 107,439,462 (+)NCBI
GRCm389107,551,434 - 107,562,264 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036155142   ⟹   XP_036011035
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,428,766 - 107,439,462 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_062687   ⟸   NM_019713
- Peptide Label: isoform 2
- UniProtKB: Q99MK9 (UniProtKB/Swiss-Prot),   Q3UIV8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001230677   ⟸   NM_001243748
- Peptide Label: isoform 1
- UniProtKB: Q99MK9 (UniProtKB/Swiss-Prot),   A9YZW8 (UniProtKB/TrEMBL),   Q3UIV8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006511833   ⟸   XM_006511770
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000091301   ⟸   ENSMUST00000093786
RefSeq Acc Id: ENSMUSP00000010211   ⟸   ENSMUST00000010211
RefSeq Acc Id: ENSMUSP00000117722   ⟸   ENSMUST00000156198
RefSeq Acc Id: ENSMUSP00000113252   ⟸   ENSMUST00000122225
RefSeq Acc Id: XP_036011035   ⟸   XM_036155142
- Peptide Label: isoform X1
Promoters
RGD ID:6845051
Promoter ID:MM_KWN:58719
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day2,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000122225,   LINCRNA_1071,   OTTMUST00000075658,   OTTMUST00000075660,   OTTMUST00000075668
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369107,452,991 - 107,454,372 (+)MPROMDB
RGD ID:6845023
Promoter ID:MM_KWN:58720
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000075661
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369107,456,311 - 107,457,132 (+)MPROMDB
RGD ID:6845022
Promoter ID:MM_KWN:58721
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000121635,   OTTMUST00000075665,   OTTMUST00000075666,   OTTMUST00000075667
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369107,458,461 - 107,460,482 (+)MPROMDB
RGD ID:8670794
Promoter ID:EPDNEW_M13427
Type:multiple initiation site
Name:Rassf1_2
Description:Mus musculus Ras association (RalGDS/AF-6) domain family member1 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13428  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389107,551,553 - 107,551,613EPDNEW
RGD ID:8670798
Promoter ID:EPDNEW_M13428
Type:initiation region
Name:Rassf1_1
Description:Mus musculus Ras association (RalGDS/AF-6) domain family member1 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13427  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389107,554,640 - 107,554,700EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1928386 AgrOrtholog
Ensembl Genes ENSMUSG00000010067 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000010211 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000091301 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000113252 UniProtKB/TrEMBL
  ENSMUSP00000117722 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000010211 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000093786 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000122225 UniProtKB/TrEMBL
  ENSMUST00000156198 UniProtKB/TrEMBL
InterPro C-RASSF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PE/DAG-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RA_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RASSF1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SARAH_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:56289 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1928386 ENTREZGENE
NCBI Gene 56289 ENTREZGENE
PANTHER PTHR22738 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR22738:SF12 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam C1_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nore1-SARAH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00788 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rassf1 PhenoGen
PROSITE PS50200 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SARAH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_DAG_PE_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_DAG_PE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00109 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00314 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54236 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Mm.12091 ENTREZGENE
  Mm.488708 ENTREZGENE
UniProt A9YZW8 ENTREZGENE, UniProtKB/TrEMBL
  B0QZV7_MOUSE UniProtKB/TrEMBL
  D6REH3_MOUSE UniProtKB/TrEMBL
  Q3UIV8 ENTREZGENE, UniProtKB/TrEMBL
  Q99MK9 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q9WUF5 UniProtKB/Swiss-Prot