1700003E16Rik (RIKEN cDNA 1700003E16 gene) - Rat Genome Database
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Gene: 1700003E16Rik (RIKEN cDNA 1700003E16 gene) Mus musculus
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Symbol: 1700003E16Rik
Name: RIKEN cDNA 1700003E16 gene
RGD ID: 1621506
MGI Page MGI
Description: Is expressed in choroid invagination; metencephalon part of 4th ventricle choroid plexus; olfactory epithelium; and palatal shelf epithelium. Orthologous to human C2orf81 (chromosome 2 open reading frame 81); INTERACTS WITH benzo[a]pyrene (ortholog); bisphenol A (ortholog); perfluorooctanoic acid (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AU041756; hypothetical protein LOC71837; MGC143552; uncharacterized protein C2orf81 homolog
RGD Orthologs
Human
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39683,133,386 - 83,139,957 (+)NCBIGRCm39mm39
GRCm39 Ensembl683,133,386 - 83,139,927 (+)Ensembl
GRCm38683,156,404 - 83,162,975 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl683,156,404 - 83,162,945 (+)EnsemblGRCm38mm10GRCm38
MGSCv37683,106,398 - 83,112,969 (+)NCBIGRCm37mm9NCBIm37
MGSCv36683,122,062 - 83,128,624 (+)NCBImm8
Celera685,139,312 - 85,145,879 (+)NCBICelera
Cytogenetic Map6C3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:17971504   PMID:21267068  
PMID:23375831  


Genomics

Comparative Map Data
1700003E16Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39683,133,386 - 83,139,957 (+)NCBIGRCm39mm39
GRCm39 Ensembl683,133,386 - 83,139,927 (+)Ensembl
GRCm38683,156,404 - 83,162,975 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl683,156,404 - 83,162,945 (+)EnsemblGRCm38mm10GRCm38
MGSCv37683,106,398 - 83,112,969 (+)NCBIGRCm37mm9NCBIm37
MGSCv36683,122,062 - 83,128,624 (+)NCBImm8
Celera685,139,312 - 85,145,879 (+)NCBICelera
Cytogenetic Map6C3NCBI
C2orf81
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl274,414,176 - 74,421,591 (-)EnsemblGRCh38hg38GRCh38
GRCh38274,414,177 - 74,421,619 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37274,641,304 - 74,648,746 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36274,488,432 - 74,498,442 (-)NCBINCBI36hg18NCBI36
Celera274,472,492 - 74,476,033 (-)NCBI
Cytogenetic Map2p13.1NCBI
HuRef274,377,616 - 74,381,157 (-)NCBIHuRef
CHM1_1274,570,728 - 74,578,175 (-)NCBICHM1_1
LOC500227
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24115,661,617 - 115,667,929 (+)NCBI
Rnor_6.0 Ensembl4114,854,458 - 114,860,677 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.04114,854,449 - 114,860,678 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04179,443,519 - 179,449,748 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44117,367,724 - 117,373,944 (+)NCBIRGSC3.4rn4RGSC3.4
Celera4104,655,846 - 104,662,066 (+)NCBICelera
Cytogenetic Map4q34NCBI
C2AH2orf81
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A75,986,826 - 75,994,278 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v02A74,480,820 - 74,488,353 (-)NCBIMhudiblu_PPA_v0panPan3
C17H2orf81
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11748,704,515 - 48,717,648 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CUNH2orf81
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936556641,090 - 646,268 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C3H2orf81
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1368,618,472 - 68,623,425 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2371,799,668 - 71,804,620 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH2orf81
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11432,856,065 - 32,870,044 (+)NCBI
CUNH2orf81
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474929,079,003 - 29,086,003 (+)NCBI

Position Markers
AU041756  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38683,162,715 - 83,162,803UniSTSGRCm38
MGSCv37683,112,709 - 83,112,797UniSTSGRCm37
Celera685,145,619 - 85,145,707UniSTS
Cytogenetic Map6C3UniSTS
Whitehead/MRC_RH6851.41UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
10412195Efw_mepididymal fat weight (mouse)Not determined67554435694225955Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67800000097000000Mouse
1301571Arrd1_mage-related retinal degeneration 1 (mouse)Not determined67554435692607450Mouse
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
4141990Etax6_methanol induced ataxia 6 (mouse)Not determined7132262186275719Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300618Pgia19_mproteoglycan induced arthritis 19 (mouse)Not determined64531405987426034Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
14697704Stsl4_mSalmonella typhimurium susceptibility locus 4 (mouse)67710000090000000Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5437342788379171Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
1300674Nidd3n_mnon-insulin-dependent diabetes mellitus 3 in NSY (mouse)Not determined67554435694225955Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681500000102200000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487426034Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301254Skts11_mskin tumor susceptibility 11 (mouse)Not determined65117915085179300Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:103
Count of miRNA genes:99
Interacting mature miRNAs:102
Transcripts:ENSMUST00000032106
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000032106   ⟹   ENSMUSP00000032106
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl683,156,404 - 83,162,945 (+)Ensembl
RefSeq Acc Id: ENSMUST00000203203   ⟹   ENSMUSP00000145406
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl683,156,501 - 83,162,891 (+)Ensembl
RefSeq Acc Id: NM_027948   ⟹   NP_082224
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,133,386 - 83,139,957 (+)NCBI
GRCm38683,156,404 - 83,162,975 (+)ENTREZGENE
MGSCv37683,106,398 - 83,112,969 (+)RGD
Celera685,139,312 - 85,145,879 (+)RGD
cM Map6 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_082224 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI26950 (Get FASTA)   NCBI Sequence Viewer  
  BAB24157 (Get FASTA)   NCBI Sequence Viewer  
  Q9DAQ4 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_082224   ⟸   NM_027948
- UniProtKB: Q9DAQ4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000145406   ⟸   ENSMUST00000203203
RefSeq Acc Id: ENSMUSP00000032106   ⟸   ENSMUST00000032106

Promoters
RGD ID:6840163
Promoter ID:MM_KWN:46584
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour,   Brain,   Kidney,   Lung,   MEF_B4
Transcripts:ENSMUST00000032106,   NM_027948,   OTTMUST00000066642,   OTTMUST00000066643,   OTTMUST00000066644,   OTTMUST00000066645,   OTTMUST00000066646,   OTTMUST00000066647,   UC009CMV.1,   UC009CMX.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36683,106,201 - 83,106,701 (-)MPROMDB
RGD ID:6890146
Promoter ID:EPDNEW_M8524
Type:initiation region
Name:1700003E16Rik_1
Description:Mus musculus RIKEN cDNA 1700003E16 gene , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38683,156,435 - 83,156,495EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1919087 AgrOrtholog
Ensembl Genes ENSMUSG00000030030 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000032106 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000145406 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000032106 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000203203 UniProtKB/TrEMBL
InterPro DUF4639 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:71837 UniProtKB/Swiss-Prot
MGD MGI:1919087 ENTREZGENE
NCBI Gene 71837 ENTREZGENE
PANTHER PTHR34438 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF4639 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen 1700003E16Rik PhenoGen
UniProt A0A0N4SW77_MOUSE UniProtKB/TrEMBL
  CB081_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary A0JNU0 UniProtKB/Swiss-Prot