Tex44 (testis expressed 44) - Rat Genome Database

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Gene: Tex44 (testis expressed 44) Mus musculus
Analyze
Symbol: Tex44
Name: testis expressed 44
RGD ID: 1621502
MGI Page MGI
Description: Predicted to be located in cytoplasm. Orthologous to human TEX44 (testis expressed 44).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1700019O17Rik; hypothetical protein LOC71863; MGC118337; RIKEN cDNA 1700019O17 gene; testis-expressed protein 44; uncharacterized protein C2orf57 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39186,354,051 - 86,355,771 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl186,354,051 - 86,355,774 (+)EnsemblGRCm39 Ensembl
GRCm38186,426,329 - 86,428,049 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl186,426,329 - 86,428,052 (+)EnsemblGRCm38mm10GRCm38
MGSCv37188,322,904 - 88,324,624 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36188,257,500 - 88,259,223 (+)NCBIMGSCv36mm8
Celera189,395,430 - 89,397,150 (+)NCBICelera
Cytogenetic Map1C5NCBI
cM Map143.94NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:21267068  


Genomics

Comparative Map Data
Tex44
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39186,354,051 - 86,355,771 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl186,354,051 - 86,355,774 (+)EnsemblGRCm39 Ensembl
GRCm38186,426,329 - 86,428,049 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl186,426,329 - 86,428,052 (+)EnsemblGRCm38mm10GRCm38
MGSCv37188,322,904 - 88,324,624 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36188,257,500 - 88,259,223 (+)NCBIMGSCv36mm8
Celera189,395,430 - 89,397,150 (+)NCBICelera
Cytogenetic Map1C5NCBI
cM Map143.94NCBI
TEX44
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382231,592,864 - 231,594,276 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2231,592,864 - 231,594,276 (+)EnsemblGRCh38hg38GRCh38
GRCh372232,457,575 - 232,458,987 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362232,165,856 - 232,167,238 (+)NCBINCBI36Build 36hg18NCBI36
Celera2226,233,973 - 226,235,392 (+)NCBICelera
Cytogenetic Map2q37.1NCBI
HuRef2224,299,530 - 224,300,949 (+)NCBIHuRef
CHM1_12232,463,249 - 232,464,668 (+)NCBICHM1_1
T2T-CHM13v2.02232,077,341 - 232,078,753 (+)NCBIT2T-CHM13v2.0
Tex44
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8994,523,649 - 94,525,067 (+)NCBIGRCr8
mRatBN7.2987,075,684 - 87,077,102 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl987,075,684 - 87,077,102 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx995,492,808 - 95,494,226 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09100,621,936 - 100,623,354 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0999,004,031 - 99,005,449 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0993,445,002 - 93,446,420 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl993,445,002 - 93,446,420 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0993,172,940 - 93,174,358 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4985,189,062 - 85,190,480 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera984,491,111 - 84,492,529 (+)NCBICelera
Cytogenetic Map9q35NCBI
Tex44
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554534,108,596 - 4,110,610 (-)NCBIChiLan1.0ChiLan1.0
TEX44
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213134,210,900 - 134,224,686 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B134,225,866 - 134,230,926 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B118,843,674 - 118,845,087 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B237,627,878 - 237,629,298 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B237,627,967 - 237,629,154 (+)Ensemblpanpan1.1panPan2
TEX44
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12543,453,253 - 43,454,573 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2543,453,310 - 43,454,437 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2544,011,601 - 44,012,918 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02543,710,636 - 43,711,953 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12543,638,003 - 43,639,337 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02543,481,143 - 43,482,460 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02543,637,050 - 43,638,367 (+)NCBIUU_Cfam_GSD_1.0
Tex44
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303185,584,212 - 185,585,661 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365255,354,202 - 5,355,338 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TEX44
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.115132,266,149 - 132,267,612 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215146,038,817 - 146,042,242 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TEX44
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110117,609,567 - 117,611,518 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10117,610,187 - 117,611,374 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604081,835,439 - 81,836,851 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tex44
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248434,673,112 - 4,674,285 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tex44
42 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:153
Count of miRNA genes:147
Interacting mature miRNAs:148
Transcripts:ENSMUST00000046004
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
1301162Skull1_mskull morphology 1 (mouse)Not determined15799197791992080Mouse
1558717Ses1a_msalmonella enteritidis susceptibility 1a (mouse)Not determined15672692290727077Mouse
1357505Vtbt1_mvertebral trabecular bone trait 1 (mouse)Not determined15626621490266360Mouse
1300746Skl1_mskeletal size (tail length) 1 (mouse)Not determined15799197791992080Mouse
13452395Leusq2_mleucocytosis susceptibility QTL 2 (mouse)180245593126386517Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
1300989Lrdg1_mlight induced retinal degeneration 1 (mouse)Not determined173755175147125370Mouse
25394563Skmw48_mskeletal muscle weight 48, EDL (mouse)18547800687323158Mouse
1301667Lxw5_mlupus BXSB x NZW 5 (mouse)Not determined15854919192549443Mouse
1300976Bmd19_mbone mineral density 19 (mouse)Not determined173266214108838414Mouse
1357847Jckm2_mjuvenile cystic kidney modifier 2 (mouse)Not determined174991977133290937Mouse
27095931Pglq1_mpelvic girdle length QTL 1, 5 week (mouse)175976637128527737Mouse
27095928Pglq6_mpelvic girdle length QTL 6, 10 week (mouse)175976637148775742Mouse
12050069Nabq1_mnasal bone morphology QTL 1 (mouse)179858683113858791Mouse
11667074Led2_mlate embryonic death 2 (mouse)185696027117195081Mouse
1301304Hrq3_mheart rate quantitative locus 3 (mouse)Not determined173615692107615830Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
1301933Insq6_minsulin QTL 6 (mouse)Not determined15672692290727077Mouse
14696693Avd2q1_mattack value day 2 QTL 1 (mouse)17897771790927722Mouse
1301748Abbp1_mA/J and C57BL/6 blood pressure 1 (mouse)Not determined162946755120529678Mouse
1302146Cocrb1_mcocaine related behavior 1 (mouse)Not determined170133533104139557Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse
12791004Aath7_maortic arch atherosclerosis 7 (mouse)182832635116832635Mouse
1357741Nidd5k_mNidd5 on KK-A<y> (mouse)Not determined15597494889975057Mouse
27095918Ulnl1_mulna length 1, 5 week (mouse)167339159129727737Mouse
1357439Popoa_mpremature ovulation and primary oocyte arrest (mouse)Not determined182643189135615379Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
14747009Manh49_mmandible shape 49 (mouse)15794135191941351Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
4141914Gcsfis_mG-CSF induced splenomegaly (mouse)Not determined74516235148715579Mouse
10412238Alpq5_malcohol preference QTL 5 (mouse)Not determined182832635116832635Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
1301444Alcw5_malcohol withdrawal 5 (mouse)Not determined15854919192549443Mouse
1302029Sst1_msusceptibility to tuberculosis 1 (mouse)Not determined18165211487130822Mouse
14746998Mancz1_mmandible centroid size 1 (mouse)15794135191941351Mouse
14696692Tavq1_mtotal attack value QTL 1 (mouse)18197771588427722Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1301350Nidd4k_mNidd4 on KK-A (mouse)Not determined782291982147125370Mouse
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163920002153557562Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
4142467Wbcq1_mwhite blood cell quantitative locus 1 (mouse)Not determined15626621490266360Mouse
1558928Mord2_mmodifier of retinal degeneration 2 (mouse)Not determined177123115110536075Mouse
25394564Skmw49_mskeletal muscle weight 49, TA (mouse)18342011988552630Mouse
1357679Egrm1_mearly growth rate, maternal effect 1 (mouse)Not determined15799197791992080Mouse
1302119Cia15_mcollagen induced arthritis 15 (mouse)Not determined16588900688496101Mouse
4142394Mssq1_mmandible size and shape QTL 1 (mouse)Not determined73615692107615830Mouse
1300821Lore1_mloss of righting induced by ethanol 1 (mouse)Not determined17554919192941077Mouse
14697706Stsl3a_mSalmonella typhimurium susceptibility locus 3a (mouse)17747663795827725Mouse
14696691Malq1_mmean attack latency QTL 1 (mouse)17797663787927722Mouse
4141725Wbcq4_mwhite blood cell quantitative locus 4 (mouse)Not determined179858683113858791Mouse

Markers in Region
UniSTS:492179  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38186,426,330 - 86,427,991UniSTSGRCm38
MGSCv37188,322,905 - 88,324,566UniSTSGRCm37
Celera189,395,431 - 89,397,092UniSTS
Cytogenetic Map1DUniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000046004   ⟹   ENSMUSP00000136430
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl186,354,051 - 86,355,774 (+)Ensembl
GRCm38.p6 Ensembl186,426,329 - 86,428,052 (+)Ensembl
RefSeq Acc Id: NM_027966   ⟹   NP_082242
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39186,354,051 - 86,355,771 (+)NCBI
GRCm38186,426,329 - 86,428,049 (+)ENTREZGENE
MGSCv37188,322,904 - 88,324,624 (+)RGD
Celera189,395,430 - 89,397,150 (+)RGD
cM Map1 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_082242 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI00498 (Get FASTA)   NCBI Sequence Viewer  
  AAI45754 (Get FASTA)   NCBI Sequence Viewer  
  BAB24427 (Get FASTA)   NCBI Sequence Viewer  
  EDL40216 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000136430
  ENSMUSP00000136430.2
GenBank Protein Q9DA60 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_082242   ⟸   NM_027966
- UniProtKB: A6H651 (UniProtKB/Swiss-Prot),   Q497K4 (UniProtKB/Swiss-Prot),   Q9DA60 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000136430   ⟸   ENSMUST00000046004

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9DA60-F1-model_v2 AlphaFold Q9DA60 1-530 view protein structure

Promoters
RGD ID:6874330
Promoter ID:EPDNEW_M616
Type:multiple initiation site
Name:Tex44_1
Description:Mus musculus testis expressed 44 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38186,426,331 - 86,426,391EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1919113 AgrOrtholog
Ensembl Genes ENSMUSG00000036574 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000046004 ENTREZGENE
  ENSMUST00000046004.6 UniProtKB/Swiss-Prot
InterPro DUF4678 UniProtKB/Swiss-Prot
KEGG Report mmu:71863 UniProtKB/Swiss-Prot
MGD MGI:1919113 ENTREZGENE
NCBI Gene 71863 ENTREZGENE
PANTHER PTHR37365 UniProtKB/Swiss-Prot
  TESTIS-EXPRESSED PROTEIN 44 UniProtKB/Swiss-Prot
Pfam DUF4678 UniProtKB/Swiss-Prot
PhenoGen Tex44 PhenoGen
UniProt A6H651 ENTREZGENE
  Q497K4 ENTREZGENE
  Q9DA60 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A6H651 UniProtKB/Swiss-Prot
  Q497K4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-01-24 Tex44  testis expressed 44  1700019O17Rik  RIKEN cDNA 1700019O17 gene  Symbol and/or name change 5135510 APPROVED