Tanc2 (tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2) - Rat Genome Database

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Gene: Tanc2 (tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2) Mus musculus
Analyze
Symbol: Tanc2
Name: tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
RGD ID: 1621448
MGI Page MGI
Description: Acts upstream of or within in utero embryonic development. Predicted to be located in cell projection and synapse. Predicted to be active in dendritic spine; glutamatergic synapse; and postsynaptic density, intracellular component. Is expressed in cerebral cortex ventricular layer; cortical plate; and neocortex. Human ortholog(s) of this gene implicated in intellectual developmental disorder with autistic features and language delay, with or without seizures. Orthologous to human TANC2 (tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 3526402J09Rik; 5730590C14Rik; tetratricopeptide repeat, ankyrin repeat and coiled-coil domain-containing protein 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911105,480,458 - 105,820,130 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11105,480,812 - 105,820,130 (+)EnsemblGRCm39 Ensembl
GRCm3811105,589,460 - 105,929,304 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11105,589,986 - 105,929,304 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711105,451,300 - 105,790,618 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611105,406,081 - 105,745,394 (+)NCBIMGSCv36mm8
Celera11117,319,535 - 117,661,003 (+)NCBICelera
Cytogenetic Map11E1NCBI
cM Map1168.73NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Mouse MP Annotation Import Pipeline RGD automated import pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:15368895   PMID:15489334   PMID:15747579  
PMID:16141072   PMID:16141073   PMID:16452087   PMID:16944949   PMID:16959763   PMID:17114649   PMID:18799693   PMID:21068316   PMID:21267068   PMID:21677750   PMID:21873635   PMID:28671696  
PMID:30995482   PMID:31040226   PMID:32325033   PMID:33378226   PMID:33976205   PMID:34321999   PMID:34964047   PMID:36417873   PMID:38092135  


Genomics

Comparative Map Data
Tanc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911105,480,458 - 105,820,130 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11105,480,812 - 105,820,130 (+)EnsemblGRCm39 Ensembl
GRCm3811105,589,460 - 105,929,304 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11105,589,986 - 105,929,304 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711105,451,300 - 105,790,618 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611105,406,081 - 105,745,394 (+)NCBIMGSCv36mm8
Celera11117,319,535 - 117,661,003 (+)NCBICelera
Cytogenetic Map11E1NCBI
cM Map1168.73NCBI
TANC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381762,966,235 - 63,427,703 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1762,966,235 - 63,427,703 (+)EnsemblGRCh38hg38GRCh38
GRCh371761,043,596 - 61,505,064 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361758,440,630 - 58,858,799 (+)NCBINCBI36Build 36hg18NCBI36
Celera1755,475,137 - 55,893,299 (+)NCBICelera
Cytogenetic Map17q23.2-q23.3NCBI
HuRef1756,455,117 - 56,873,425 (+)NCBIHuRef
CHM1_11761,151,133 - 61,569,236 (+)NCBICHM1_1
T2T-CHM13v2.01763,836,303 - 64,297,911 (+)NCBIT2T-CHM13v2.0
Tanc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81091,052,860 - 91,373,291 (+)NCBIGRCr8
mRatBN7.21090,553,124 - 90,873,477 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1090,553,002 - 90,868,756 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1095,601,396 - 95,915,458 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01095,064,563 - 95,378,631 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01090,482,967 - 90,797,525 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01093,811,350 - 94,132,418 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1093,811,350 - 94,127,697 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01093,567,079 - 93,880,565 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41094,992,107 - 95,319,058 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11095,005,414 - 95,332,662 (+)NCBI
Celera1089,232,884 - 89,546,990 (+)NCBICelera
Cytogenetic Map10q32.1NCBI
Tanc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554788,376,487 - 8,757,136 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554788,370,813 - 8,757,132 (-)NCBIChiLan1.0ChiLan1.0
TANC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21979,129,141 - 79,601,009 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11783,946,714 - 84,418,596 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01757,037,330 - 57,509,229 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11762,185,121 - 62,656,041 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1762,239,230 - 62,650,299 (+)Ensemblpanpan1.1panPan2
TANC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1911,133,634 - 11,459,738 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl911,151,475 - 11,454,022 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha912,112,386 - 12,420,462 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0912,753,835 - 13,122,957 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl912,753,841 - 13,119,057 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1911,699,638 - 12,067,930 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0915,464,054 - 15,832,278 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0915,466,810 - 15,836,349 (-)NCBIUU_Cfam_GSD_1.0
Tanc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560215,074,440 - 15,491,870 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365413,744,687 - 4,115,007 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365413,702,743 - 4,115,009 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TANC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1215,453,241 - 15,813,469 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11215,448,584 - 15,813,831 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21215,435,191 - 15,618,010 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TANC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11657,849,592 - 58,254,957 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1657,855,282 - 58,306,571 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607728,468,449 - 28,937,813 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tanc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624849452,884 - 940,686 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624849452,848 - 946,511 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tanc2
8507 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4339
Count of miRNA genes:931
Interacting mature miRNAs:1372
Transcripts:ENSMUST00000089485, ENSMUST00000100330, ENSMUST00000124367, ENSMUST00000146162, ENSMUST00000147975, ENSMUST00000167695, ENSMUST00000168598
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172019649106019734Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172726125106726289Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172818615106818733Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172818615106818733Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177063779111063918Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177437183111437322Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177437183111437322Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177770978111771099Mouse
1301640Lore4_mloss of righting induced by ethanol 4 (mouse)Not determined1179156009107616472Mouse
14746970Manh71_mmandible shape 71 (mouse)1179416257113416257Mouse
1300649Crhq1_mcompensatory renal hypertrophy QTL 1 (mouse)Not determined1181574481115574636Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181574481115574636Mouse
10412288Carg4_mCandida albicans resistance gene 4 (mouse)Not determined1181810267115810267Mouse
1301072Eae22_mexperimental allergic encephalomyelitis 22 (mouse)Not determined1182377698116377820Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185844911119844911Mouse
15039374Adip29_madiposity 29 (mouse)1186608320120608320Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186608320120608320Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186608320120608320Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187490826121873369Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187502600121502698Mouse
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189869251121973369Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191604608121973369Mouse
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191604608121973369Mouse
10045617Heal26_mwound healing/regeneration 26 (mouse)Not determined1192939373112544554Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193229183121973369Mouse
4141939Pregq2_mpregnancy QTL 2 (mouse)Not determined1194063779118022724Mouse
27226731Tibmd4_mtibia midshaft diameter 4, 10 week (mouse)1194190826118890826Mouse
4141465Dbm2_mdiabetes modifier 2 (mouse)Not determined94437183118022724Mouse
1301958Alcp18_malcohol preference locus 18 (mouse)Not determined1195403965121973369Mouse
1300944Alcp20_malcohol preference locus 20 (mouse)Not determined1195403965121973369Mouse
1300962Cd8mts4_mCD8 memory T cell subset 4 (mouse)Not determined1196137674121973369Mouse
1301535Pas5b_mpulmonary adenoma susceptibility 5b (mouse)Not determined1196176465108806384Mouse
1301057Nidd4_mnon-insulin-dependent diabetes mellitus 4 (mouse)Not determined1196810136121973369Mouse
12910539Sstapa3_msuseptibility to Staphylococcus aureus infection 3 (mouse)1196897693110603991Mouse
1301983Berr2_mberghei resistance locus 2 (mouse)Not determined1198352609121973369Mouse
10043976Obq33_mobesity QTL 33 (mouse)Not determined1198500469121973369Mouse
10044001Alcw8_malcohol withdrawal 8 (mouse)Not determined1199254187121973369Mouse
11553867Stmm5_mskin tumor modifier of MSM 5 (mouse)11100058103121973369Mouse
11341721Rvfs2_mRift Valley fever susceptibility 2 (mouse)11100254186120887165Mouse
1301012Vispl_mvisual placing (mouse)Not determined11101022590121973369Mouse
14700693Ppiq12_mprepulse inhibition QTL 12 (mouse)11101504820114472363Mouse
14700694Ppiq13_mprepulse inhibition QTL 13 (mouse)11101504820114472363Mouse
14700695Ppiq14_mprepulse inhibition QTL 14 (mouse)11101504820114472363Mouse
14700696Ppiq15_mprepulse inhibition QTL 15 (mouse)11101504820114472363Mouse
1300957Pbd1_mpeak bone density 1 (mouse)Not determined11102344123112384123Mouse
4141612Cia40_mcollagen induced arthritis 40 (mouse)Not determined11103273992115021444Mouse

Markers in Region
11.MMHAP16FLD2.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811105,748,427 - 105,748,593UniSTSGRCm38
MGSCv3711105,609,741 - 105,609,907UniSTSGRCm37
Celera11117,479,977 - 117,480,143UniSTS
Cytogenetic Map11E1UniSTS
Whitehead_YAC11 UniSTS
D9Mit34.1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map2C1.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11B4UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map1E3UniSTS
Cytogenetic Map5E1UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map16B3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map19D3UniSTS
Cytogenetic Map1H5UniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map9DUniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map17DUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map13A1UniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map12A3UniSTS
Cytogenetic Map1H2.1UniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map7B1UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map5C3.1UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map2C2UniSTS
Cytogenetic Map19CUniSTS
Cytogenetic Map17E1.3UniSTS
Cytogenetic Map5A1UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map13A5UniSTS
Cytogenetic MapXA1.1UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map3A3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map8CUniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map1H1UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map1A2UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map5G1.3UniSTS
Cytogenetic Map7D1-E2UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map1H2.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map15F2UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map1H4-H6UniSTS
Cytogenetic Map12D2UniSTS
Cytogenetic Map1G3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map1H3UniSTS
Cytogenetic Map19BUniSTS
cM Map950.0UniSTS
Whitehead Genetic943.7UniSTS
AA956078  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811105,929,032 - 105,929,179UniSTSGRCm38
MGSCv3711105,790,346 - 105,790,493UniSTSGRCm37
Celera11117,660,731 - 117,660,878UniSTS
Cytogenetic Map11E1UniSTS
D11Bhm20  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map12D1UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map4E1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map13D2UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map16C4UniSTS
Cytogenetic Map3G1UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map7B1-B2UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic Map10D2UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map11A3.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map19BUniSTS
cM Map1144.15UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_181071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEKQ02045635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI413677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK019982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK173111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL596246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL627312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL645524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC022116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC030367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC062652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC089352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP766228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000089485   ⟹   ENSMUSP00000086912
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11105,790,548 - 105,815,558 (+)Ensembl
GRCm38.p6 Ensembl11105,899,722 - 105,924,732 (+)Ensembl
RefSeq Acc Id: ENSMUST00000100330   ⟹   ENSMUSP00000097904
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11105,480,817 - 105,820,130 (+)Ensembl
GRCm38.p6 Ensembl11105,589,991 - 105,929,304 (+)Ensembl
RefSeq Acc Id: ENSMUST00000124367
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11105,515,864 - 105,606,379 (+)Ensembl
GRCm38.p6 Ensembl11105,625,038 - 105,715,553 (+)Ensembl
RefSeq Acc Id: ENSMUST00000146162   ⟹   ENSMUSP00000123674
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11105,787,305 - 105,814,941 (+)Ensembl
GRCm38.p6 Ensembl11105,896,479 - 105,924,115 (+)Ensembl
RefSeq Acc Id: ENSMUST00000147975
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11105,792,809 - 105,806,864 (+)Ensembl
GRCm38.p6 Ensembl11105,901,983 - 105,916,038 (+)Ensembl
RefSeq Acc Id: ENSMUST00000167695   ⟹   ENSMUSP00000126201
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11105,604,366 - 105,605,655 (+)Ensembl
GRCm38.p6 Ensembl11105,713,540 - 105,714,829 (+)Ensembl
RefSeq Acc Id: ENSMUST00000168598   ⟹   ENSMUSP00000129877
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11105,480,812 - 105,667,660 (+)Ensembl
GRCm38.p6 Ensembl11105,589,986 - 105,776,834 (+)Ensembl
RefSeq Acc Id: ENSMUST00000207807   ⟹   ENSMUSP00000147168
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11105,564,248 - 105,667,723 (+)Ensembl
GRCm38.p6 Ensembl11105,673,422 - 105,776,897 (+)Ensembl
RefSeq Acc Id: NM_181071   ⟹   NP_851416
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911105,480,812 - 105,820,130 (+)NCBI
GRCm3811105,589,986 - 105,929,304 (+)NCBI
MGSCv3711105,451,300 - 105,790,618 (+)RGD
Celera11117,319,535 - 117,661,003 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006534472   ⟹   XP_006534535
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911105,480,458 - 105,820,130 (+)NCBI
GRCm3811105,589,632 - 105,929,304 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006534473   ⟹   XP_006534536
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911105,480,458 - 105,820,130 (+)NCBI
GRCm3811105,589,632 - 105,929,304 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006534474   ⟹   XP_006534537
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911105,480,458 - 105,820,130 (+)NCBI
GRCm3811105,589,632 - 105,929,304 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006534475   ⟹   XP_006534538
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911105,480,458 - 105,820,130 (+)NCBI
GRCm3811105,589,632 - 105,929,304 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006534476   ⟹   XP_006534539
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911105,480,458 - 105,820,130 (+)NCBI
GRCm3811105,589,632 - 105,929,304 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006534477   ⟹   XP_006534540
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911105,480,458 - 105,820,130 (+)NCBI
GRCm3811105,589,632 - 105,929,304 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006534478   ⟹   XP_006534541
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911105,480,458 - 105,820,130 (+)NCBI
GRCm3811105,589,632 - 105,929,304 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006534480   ⟹   XP_006534543
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911105,621,102 - 105,820,130 (+)NCBI
GRCm3811105,730,252 - 105,929,304 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006534481   ⟹   XP_006534544
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911105,621,102 - 105,820,130 (+)NCBI
GRCm3811105,730,252 - 105,929,304 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006534482   ⟹   XP_006534545
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911105,480,458 - 105,820,130 (+)NCBI
GRCm3811105,589,460 - 105,924,364 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006534483   ⟹   XP_006534546
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911105,480,458 - 105,820,130 (+)NCBI
GRCm3811105,589,460 - 105,929,304 (+)NCBI
Sequence:
RefSeq Acc Id: NP_851416   ⟸   NM_181071
- UniProtKB: Q5EBP6 (UniProtKB/Swiss-Prot),   Q3TRZ3 (UniProtKB/Swiss-Prot),   A2A683 (UniProtKB/Swiss-Prot),   Q69ZQ7 (UniProtKB/Swiss-Prot),   A2A690 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006534541   ⟸   XM_006534478
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006534535   ⟸   XM_006534472
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006534536   ⟸   XM_006534473
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006534537   ⟸   XM_006534474
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006534538   ⟸   XM_006534475
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006534546   ⟸   XM_006534483
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_006534539   ⟸   XM_006534476
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006534540   ⟸   XM_006534477
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006534545   ⟸   XM_006534482
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_006534543   ⟸   XM_006534480
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_006534544   ⟸   XM_006534481
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: ENSMUSP00000123674   ⟸   ENSMUST00000146162
RefSeq Acc Id: ENSMUSP00000129877   ⟸   ENSMUST00000168598
RefSeq Acc Id: ENSMUSP00000097904   ⟸   ENSMUST00000100330
RefSeq Acc Id: ENSMUSP00000086912   ⟸   ENSMUST00000089485
RefSeq Acc Id: ENSMUSP00000147168   ⟸   ENSMUST00000207807
RefSeq Acc Id: ENSMUSP00000126201   ⟸   ENSMUST00000167695

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A2A690-F1-model_v2 AlphaFold A2A690 1-1994 view protein structure

Promoters
RGD ID:6822269
Promoter ID:MM_KWN:10187
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Lung
Transcripts:ENSMUST00000066094,   OTTMUST00000006113,   OTTMUST00000006406
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611105,450,724 - 105,451,224 (+)MPROMDB
RGD ID:8677034
Promoter ID:EPDNEW_M16548
Type:initiation region
Name:Tanc2_1
Description:Mus musculus tetratricopeptide repeat, ankyrin repeat and coiled-coilcontaining 2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M16549  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811105,590,002 - 105,590,062EPDNEW
RGD ID:8677036
Promoter ID:EPDNEW_M16549
Type:single initiation site
Name:Tanc2_2
Description:Mus musculus tetratricopeptide repeat, ankyrin repeat and coiled-coilcontaining 2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M16548  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811105,901,905 - 105,901,965EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2444121 AgrOrtholog
Ensembl Genes ENSMUSG00000053580 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000089485.6 UniProtKB/TrEMBL
  ENSMUST00000100330 ENTREZGENE
  ENSMUST00000100330.10 UniProtKB/Swiss-Prot
  ENSMUST00000146162.8 UniProtKB/TrEMBL
  ENSMUST00000167695.2 UniProtKB/TrEMBL
  ENSMUST00000168598.8 UniProtKB/TrEMBL
  ENSMUST00000207807.2 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.25.40.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot
  TPR-like_helical_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:77097 UniProtKB/Swiss-Prot
MGD MGI:2444121 ENTREZGENE
NCBI Gene 77097 ENTREZGENE
PANTHER PROTEIN TANC2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ROLLING PEBBLES, ISOFORM B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ank UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ank_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ank_4 UniProtKB/TrEMBL
  TPR_8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tanc2 PhenoGen
PRINTS ANKYRIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR_REGION UniProtKB/Swiss-Prot
SMART ANK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF48452 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52540 UniProtKB/Swiss-Prot
UniProt A0A140LJD2_MOUSE UniProtKB/TrEMBL
  A2A683 ENTREZGENE
  A2A690 ENTREZGENE
  E9Q2K2_MOUSE UniProtKB/TrEMBL
  F6VCI2_MOUSE UniProtKB/TrEMBL
  F6VP19_MOUSE UniProtKB/TrEMBL
  F6ZIH9_MOUSE UniProtKB/TrEMBL
  Q3TRZ3 ENTREZGENE
  Q3UF55_MOUSE UniProtKB/TrEMBL
  Q5EBP6 ENTREZGENE
  Q69ZQ7 ENTREZGENE
  Q8BUK5_MOUSE UniProtKB/TrEMBL
  TANC2_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary A2A683 UniProtKB/Swiss-Prot
  Q3TRZ3 UniProtKB/Swiss-Prot
  Q5EBP6 UniProtKB/Swiss-Prot
  Q69ZQ7 UniProtKB/Swiss-Prot