Sri (sorcin) - Rat Genome Database

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Gene: Sri (sorcin) Mus musculus
Analyze
Symbol: Sri
Name: sorcin
RGD ID: 1621397
MGI Page MGI
Description: Enables DNA-binding transcription factor binding activity. Involved in negative regulation of cardiac muscle contraction; positive regulation of insulin secretion involved in cellular response to glucose stimulus; and positive regulation of release of sequestered calcium ion into cytosol. Acts upstream of or within calcium ion transport. Located in Z disc; plasma membrane; and vesicle. Orthologous to human SRI (sorcin).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2210417O06Rik; 2900070H08Rik; Sor
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3958,096,078 - 8,119,314 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl58,096,078 - 8,119,379 (+)EnsemblGRCm39 Ensembl
GRCm3858,046,078 - 8,069,314 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl58,046,078 - 8,069,379 (+)EnsemblGRCm38mm10GRCm38
MGSCv3758,046,080 - 8,069,245 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3658,052,084 - 8,073,860 (+)NCBIMGSCv36mm8
Celera57,979,518 - 8,002,729 (+)NCBICelera
Cytogenetic Map5A1NCBI
cM Map53.38NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-alpha-phellandrene  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
1,1,1-trichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (ISO)
acetamide  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
alpha-phellandrene  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
Brodifacoum  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chromium(6+)  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
D-glucose  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
diethylstilbestrol  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
Enterolactone  (ISO)
ethanol  (EXP)
ethyl methanesulfonate  (ISO)
fluoranthene  (EXP)
folic acid  (EXP)
formaldehyde  (ISO)
furan  (ISO)
glafenine  (ISO)
glucose  (ISO)
glycidyl methacrylate  (ISO)
ivermectin  (ISO)
lead diacetate  (ISO)
menadione  (ISO)
methapyrilene  (ISO)
methidathion  (EXP)
methotrexate  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
methylparaben  (ISO)
N-nitrosodimethylamine  (ISO)
ozone  (EXP)
paclitaxel  (ISO)
paracetamol  (ISO)
potassium chromate  (ISO)
potassium dichromate  (ISO)
pyrrolidine dithiocarbamate  (EXP)
rac-lactic acid  (ISO)
resveratrol  (EXP)
rotenone  (ISO)
SB 431542  (ISO)
senecionine  (EXP)
sodium arsenate  (EXP)
sodium dichromate  (ISO)
sucrose  (EXP)
tamibarotene  (ISO)
temozolomide  (ISO)
tetrahydropalmatine  (ISO)
thioacetamide  (ISO)
topotecan  (ISO)
triphenyl phosphate  (ISO)
valdecoxib  (ISO)
valproic acid  (ISO)
vincristine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Defective Ca(2+) handling proteins regulation during heart failure. Hu ST, etal., Physiol Res. 2011;60(1):27-37. Epub 2010 Oct 15.
2. Sorcin regulates excitation-contraction coupling in the heart. Meyers MB, etal., J Biol Chem. 2003 Aug 1;278(31):28865-71. Epub 2003 May 16.
3. Transgenic mice with cardiac-specific expression of activating transcription factor 3, a stress-inducible gene, have conduction abnormalities and contractile dysfunction. Okamoto Y, etal., Am J Pathol. 2001 Aug;159(2):639-50.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1627461   PMID:1783386   PMID:8543148   PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12824171  
PMID:12925238   PMID:14610273   PMID:14644162   PMID:15489334   PMID:15782199   PMID:15872312   PMID:16141072   PMID:16141073   PMID:16204356   PMID:17130302   PMID:17707398   PMID:21677750  
PMID:21873635   PMID:22326846   PMID:22338092   PMID:22928916   PMID:26822088   PMID:29174767   PMID:29273681   PMID:31146259   PMID:31309533   PMID:32325033   PMID:33675811   PMID:36293380  


Genomics

Comparative Map Data
Sri
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3958,096,078 - 8,119,314 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl58,096,078 - 8,119,379 (+)EnsemblGRCm39 Ensembl
GRCm3858,046,078 - 8,069,314 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl58,046,078 - 8,069,379 (+)EnsemblGRCm38mm10GRCm38
MGSCv3758,046,080 - 8,069,245 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3658,052,084 - 8,073,860 (+)NCBIMGSCv36mm8
Celera57,979,518 - 8,002,729 (+)NCBICelera
Cytogenetic Map5A1NCBI
cM Map53.38NCBI
SRI
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38788,205,115 - 88,226,976 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl788,205,115 - 88,226,993 (-)EnsemblGRCh38hg38GRCh38
GRCh37787,834,430 - 87,856,291 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36787,672,368 - 87,694,244 (-)NCBINCBI36Build 36hg18NCBI36
Celera782,539,034 - 82,560,910 (-)NCBICelera
Cytogenetic Map7q21.12NCBI
HuRef782,444,285 - 82,466,161 (-)NCBIHuRef
CHM1_1787,764,960 - 87,786,830 (-)NCBICHM1_1
T2T-CHM13v2.0789,455,604 - 89,477,464 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2787,165,789 - 87,187,665 (-)NCBI
Sri
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8426,928,338 - 26,952,980 (-)NCBIGRCr8
mRatBN7.2425,973,493 - 25,997,879 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl425,966,750 - 25,998,077 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx430,960,404 - 30,973,377 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0426,886,620 - 26,899,593 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0425,263,902 - 25,276,454 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0423,004,657 - 23,029,233 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl423,006,243 - 23,018,983 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0422,937,276 - 22,962,347 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera421,457,445 - 21,469,637 (-)NCBICelera
Cytogenetic Map4q12NCBI
Sri
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554325,541,311 - 5,560,294 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554325,541,311 - 5,559,781 (-)NCBIChiLan1.0ChiLan1.0
SRI
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26106,086,942 - 106,101,957 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17154,351,580 - 154,366,595 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0780,199,719 - 80,214,733 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1793,849,129 - 93,864,088 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl793,850,496 - 93,864,029 (-)Ensemblpanpan1.1panPan2
SRI
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11414,257,375 - 14,274,816 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1414,260,052 - 14,274,801 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1413,829,493 - 13,846,925 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01414,022,300 - 14,039,737 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1414,020,645 - 14,039,218 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11414,232,295 - 14,250,007 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01413,951,888 - 13,969,513 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01414,237,364 - 14,255,079 (-)NCBIUU_Cfam_GSD_1.0
Sri
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511827,273,150 - 27,285,562 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936763710,777 - 730,276 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936763715,884 - 728,548 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SRI
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl968,490,890 - 68,515,322 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1968,492,235 - 68,515,247 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2974,928,185 - 74,950,459 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SRI
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12160,730,164 - 60,751,054 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2160,730,051 - 60,749,678 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604243,353,983 - 43,369,330 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sri
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248095,160,737 - 5,191,514 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248095,160,731 - 5,187,914 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sri
837 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1578
Count of miRNA genes:607
Interacting mature miRNAs:766
Transcripts:ENSMUST00000003245, ENSMUST00000088786, ENSMUST00000144265, ENSMUST00000145119, ENSMUST00000148633, ENSMUST00000149420
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141234Pbwg14_mpostnatal body weight growth 14 (mouse)Not determined5121273552Mouse
1301468Eye1_meye weight 1 (mouse)Not determined5121929650Mouse
10412081Bwq13_mbody weight QTL 13 (mouse)Not determined5123606323Mouse
12904958Gmmq8_mgastrocnemius muscle mass QTL 8 (mouse)5129421124Mouse
10401122Pgia41_mproteoglycan induced arthritis 41 (mouse)Not determined582314434823280Mouse
12738412Lfibq4_mliver fibrosis QTL 4 (mouse)5315000020799180Mouse
15039371Nmrs21_mNAFLD-associated magnetic resonance shift 21 (mouse)5350482337504823Mouse
13442491Mecth1_mmechanosensation threshold 1 (mouse)5451800019834998Mouse
1301806Actd2_mactivity-distance traveled 2 (mouse)Not determined5538452039384652Mouse

Markers in Region
AI854032  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3858,072,611 - 8,072,742UniSTSGRCm38
MGSCv3758,072,611 - 8,072,742UniSTSGRCm37
Celera58,006,096 - 8,006,227UniSTS
Cytogenetic Map5A1UniSTS
Cytogenetic Map5A1-hUniSTS
cM Map50.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001080974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_025618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006503527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC140364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC065790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ033487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY708689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK428157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OQ789964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000003245
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl58,109,342 - 8,117,726 (+)Ensembl
GRCm38.p6 Ensembl58,059,342 - 8,067,726 (+)Ensembl
RefSeq Acc Id: ENSMUST00000088786   ⟹   ENSMUSP00000086165
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl58,096,078 - 8,119,379 (+)Ensembl
GRCm38.p6 Ensembl58,046,078 - 8,069,379 (+)Ensembl
RefSeq Acc Id: ENSMUST00000144265
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl58,106,562 - 8,109,721 (+)Ensembl
GRCm38.p6 Ensembl58,056,562 - 8,059,721 (+)Ensembl
RefSeq Acc Id: ENSMUST00000145119
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl58,106,558 - 8,107,855 (+)Ensembl
GRCm38.p6 Ensembl58,056,558 - 8,057,855 (+)Ensembl
RefSeq Acc Id: ENSMUST00000148633   ⟹   ENSMUSP00000118221
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl58,106,527 - 8,119,151 (+)Ensembl
GRCm38.p6 Ensembl58,056,527 - 8,069,151 (+)Ensembl
RefSeq Acc Id: ENSMUST00000149420
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl58,106,608 - 8,114,603 (+)Ensembl
GRCm38.p6 Ensembl58,056,608 - 8,064,603 (+)Ensembl
RefSeq Acc Id: ENSMUST00000197065
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl58,111,266 - 8,112,471 (+)Ensembl
GRCm38.p6 Ensembl58,061,266 - 8,062,471 (+)Ensembl
RefSeq Acc Id: NM_001080974   ⟹   NP_001074443
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3958,106,542 - 8,119,314 (+)NCBI
GRCm3858,056,542 - 8,069,314 (+)NCBI
MGSCv3758,046,080 - 8,069,245 (+)RGD
Celera57,979,516 - 8,002,798 (+)NCBI
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_025618   ⟹   NP_079894
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3958,096,078 - 8,119,314 (+)NCBI
GRCm3858,046,078 - 8,069,314 (+)NCBI
MGSCv3758,046,080 - 8,069,245 (+)RGD
Celera57,979,516 - 8,002,798 (+)NCBI
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006503527   ⟹   XP_006503590
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3958,109,405 - 8,119,177 (+)NCBI
GRCm3858,059,405 - 8,069,177 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017320600   ⟹   XP_017176089
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3958,112,530 - 8,119,177 (+)NCBI
GRCm3858,062,537 - 8,069,177 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_079894   ⟸   NM_025618
- Peptide Label: isoform 2
- UniProtKB: Q6P069 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001074443   ⟸   NM_001080974
- Peptide Label: isoform 1
- UniProtKB: Q9CR38 (UniProtKB/Swiss-Prot),   Q3UKC5 (UniProtKB/Swiss-Prot),   Q9D7V8 (UniProtKB/Swiss-Prot),   Q6P069 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006503590   ⟸   XM_006503527
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017176089   ⟸   XM_017320600
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000086165   ⟸   ENSMUST00000088786
RefSeq Acc Id: ENSMUSP00000118221   ⟸   ENSMUST00000148633
Protein Domains
EF-hand

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6P069-F1-model_v2 AlphaFold Q6P069 1-198 view protein structure

Promoters
RGD ID:6838413
Promoter ID:MM_KWN:41322
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:OTTMUST00000063523
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3658,045,836 - 8,046,336 (+)MPROMDB
RGD ID:6838414
Promoter ID:MM_KWN:41325
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000063524,   OTTMUST00000063525,   OTTMUST00000063526,   OTTMUST00000063527
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3658,056,181 - 8,056,687 (+)MPROMDB
RGD ID:6885950
Promoter ID:EPDNEW_M6426
Type:initiation region
Name:Sri_1
Description:Mus musculus sorcin , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3858,056,579 - 8,056,639EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:98419 AgrOrtholog
Ensembl Genes ENSMUSG00000003161 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000088786 ENTREZGENE
  ENSMUST00000088786.11 UniProtKB/Swiss-Prot
  ENSMUST00000148633 ENTREZGENE
  ENSMUST00000148633.4 UniProtKB/Swiss-Prot
Gene3D-CATH 6.10.140.900 UniProtKB/Swiss-Prot
  EF-hand UniProtKB/Swiss-Prot
InterPro EF-hand-dom_pair UniProtKB/Swiss-Prot
  EF_Hand_1_Ca_BS UniProtKB/Swiss-Prot
  EF_hand_dom UniProtKB/Swiss-Prot
KEGG Report mmu:109552 UniProtKB/Swiss-Prot
MGD MGI:98419 ENTREZGENE
NCBI Gene 109552 ENTREZGENE
PANTHER CALPAIN, SMALL SUBUNIT 1 A-RELATED UniProtKB/Swiss-Prot
  SORCIN UniProtKB/Swiss-Prot
Pfam EF-hand_7 UniProtKB/Swiss-Prot
  EF-hand_8 UniProtKB/Swiss-Prot
PhenoGen Sri PhenoGen
PROSITE EF_HAND_1 UniProtKB/Swiss-Prot
  EF_HAND_2 UniProtKB/Swiss-Prot
SMART EFh UniProtKB/Swiss-Prot
Superfamily-SCOP SSF47473 UniProtKB/Swiss-Prot
UniProt Q3UKC5 ENTREZGENE
  Q6P069 ENTREZGENE
  Q9CR38 ENTREZGENE
  Q9D7V8 ENTREZGENE
  SORCN_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q3UKC5 UniProtKB/Swiss-Prot
  Q9CR38 UniProtKB/Swiss-Prot
  Q9D7V8 UniProtKB/Swiss-Prot