Lmo3 (LIM domain only 3) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Lmo3 (LIM domain only 3) Mus musculus
Analyze
Symbol: Lmo3
Name: LIM domain only 3
RGD ID: 1621396
MGI Page MGI
Description: Predicted to enable DNA-binding transcription factor binding activity and transcription coactivator activity. Acts upstream of or within exploration behavior and positive regulation of transcription by RNA polymerase II. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in several structures, including brain; cochlea; spinal cord; and vestibulo-cochlear ganglion. Orthologous to human LMO3 (LIM domain only 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI854781; BB106490; LIM domain only protein 3; LIM only 3; LMO-3; neuronal-specific transcription factor DAT1; Rbt; Rbtn; Rbtn-3; Rbtn3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396138,339,916 - 138,559,204 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6138,339,916 - 138,558,966 (-)EnsemblGRCm39 Ensembl
GRCm386138,362,918 - 138,582,206 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6138,362,918 - 138,581,968 (-)EnsemblGRCm38mm10GRCm38
MGSCv376138,313,002 - 138,530,489 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366138,328,677 - 138,546,164 (-)NCBIMGSCv36mm8
Celera6141,430,681 - 141,644,348 (-)NCBICelera
Cytogenetic Map6G1NCBI
cM Map669.02NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
nucleus  (IBA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Mouse MP Annotation Import Pipeline RGD automated import pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1507224   PMID:8889548   PMID:9011744   PMID:9204936   PMID:9321483   PMID:9590173   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11165475   PMID:11217851   PMID:12466851  
PMID:12477932   PMID:12619132   PMID:14566948   PMID:14966285   PMID:15295034   PMID:15489334   PMID:15758185   PMID:16141072   PMID:16141073   PMID:16597514   PMID:16602821   PMID:17442747  
PMID:17694053   PMID:18287559   PMID:18940588   PMID:19030180   PMID:19236851   PMID:19386638   PMID:19571125   PMID:19627984   PMID:19759535   PMID:20059953   PMID:20181579   PMID:20211142  
PMID:20436479   PMID:21267068   PMID:21440680   PMID:21599714   PMID:21658586   PMID:21873635   PMID:22817342   PMID:23136391   PMID:23193182   PMID:23575831   PMID:23823477   PMID:24157949  
PMID:24262147   PMID:24723342   PMID:24952961   PMID:24997765   PMID:25057208   PMID:25113559   PMID:25176312   PMID:25641781   PMID:26156403   PMID:26297811   PMID:26671461   PMID:26830346  
PMID:27282384   PMID:28031177   PMID:28219675   PMID:28671696   PMID:29577367   PMID:29609111   PMID:30635555   PMID:30689541   PMID:31843520   PMID:32553152   PMID:32562661   PMID:33739968  
PMID:34018016   PMID:34921112   PMID:35377797   PMID:37532091   PMID:38160393  


Genomics

Comparative Map Data
Lmo3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396138,339,916 - 138,559,204 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6138,339,916 - 138,558,966 (-)EnsemblGRCm39 Ensembl
GRCm386138,362,918 - 138,582,206 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6138,362,918 - 138,581,968 (-)EnsemblGRCm38mm10GRCm38
MGSCv376138,313,002 - 138,530,489 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366138,328,677 - 138,546,164 (-)NCBIMGSCv36mm8
Celera6141,430,681 - 141,644,348 (-)NCBICelera
Cytogenetic Map6G1NCBI
cM Map669.02NCBI
LMO3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381216,548,372 - 16,610,174 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1216,548,372 - 16,610,594 (-)EnsemblGRCh38hg38GRCh38
GRCh371216,701,306 - 16,761,148 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361216,592,574 - 16,652,291 (-)NCBINCBI36Build 36hg18NCBI36
Build 341216,592,573 - 16,650,698NCBI
Celera1221,845,084 - 21,904,807 (-)NCBICelera
Cytogenetic Map12p12.3NCBI
HuRef1216,469,772 - 16,529,598 (-)NCBIHuRef
CHM1_11216,666,323 - 16,726,164 (-)NCBICHM1_1
T2T-CHM13v2.01216,425,771 - 16,487,621 (-)NCBIT2T-CHM13v2.0
Lmo3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84172,965,944 - 173,028,980 (-)NCBIGRCr8
mRatBN7.24171,234,686 - 171,297,677 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4171,234,696 - 171,292,222 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4177,529,732 - 177,588,943 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04173,313,901 - 173,373,109 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04171,934,427 - 171,993,645 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04172,942,023 - 173,005,630 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4172,942,020 - 173,005,634 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04237,193,254 - 237,256,248 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44175,454,813 - 175,514,615 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4159,806,475 - 159,863,495 (-)NCBICelera
Cytogenetic Map4q44NCBI
Lmo3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541313,181,048 - 13,246,246 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541313,183,294 - 13,238,875 (-)NCBIChiLan1.0ChiLan1.0
LMO3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21021,990,278 - 22,051,148 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11221,987,039 - 22,048,472 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01216,544,474 - 16,605,925 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11216,940,325 - 17,001,622 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1216,902,025 - 16,997,809 (-)Ensemblpanpan1.1panPan2
LMO3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12730,150,311 - 30,208,286 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2730,152,053 - 30,206,924 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2716,239,149 - 16,295,078 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02730,478,768 - 30,534,669 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2730,478,462 - 30,533,199 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12730,329,210 - 30,385,083 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02730,318,468 - 30,374,400 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02715,960,154 - 16,016,308 (-)NCBIUU_Cfam_GSD_1.0
Lmo3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494591,303,815 - 91,359,977 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365871,035,680 - 1,089,804 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365871,035,007 - 1,089,798 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LMO3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1556,056,885 - 56,118,813 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2559,453,257 - 59,512,969 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LMO3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11116,454,240 - 16,516,403 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606918,776,821 - 18,839,162 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lmo3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475221,484,949 - 21,543,169 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475221,482,234 - 21,542,602 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Lmo3
13438 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2522
Count of miRNA genes:648
Interacting mature miRNAs:770
Transcripts:ENSMUST00000067437, ENSMUST00000160050, ENSMUST00000161450, ENSMUST00000162185, ENSMUST00000162772, ENSMUST00000162932, ENSMUST00000163024, ENSMUST00000163065
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142079Skmw15_mskeletal muscle weight 15 (mouse)Not determined6116829851149588044Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683690851146954059Mouse
11252138Clas1_mcarcinogen-induced lung adenoma susceptibility 1 (mouse)6112246918146954059Mouse
10449437Pas15_mpulmonary adenoma susceptibility 15 (mouse)6128180868149588044Mouse
10449436Pas17_mpulmonary adenoma susceptibility 17 (mouse)6124334273145601739Mouse
1301658Radpf3_mradiation pulmonary fibrosis 3 (mouse)Not determined6115219814146330736Mouse
4141940W6q5_mweight 6 weeks QTL 5 (mouse)Not determined96632912146535124Mouse
4140980Mvwf2_mmodifier of von Willebrand factor 2 (mouse)Not determined114345693145601739Mouse
1301084Bpq5_mblood pressure QTL 5 (mouse)Not determined6129330484149588044Mouse
14746990Manh61_mmandible shape 61 (mouse)6130156355149588044Mouse
4141295Rua_mraffinose acetate tasting (mouse)Not determined115546805149549364Mouse
10766452Sle23_msystematic lupus erythematosus susceptibility 23 (mouse)6128601582149588044Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648696934148351498Mouse
14746999Mancz6_mmandible centroid size 6 (mouse)6130156355149588044Mouse
1302089Wta2_mweight adult 2 (mouse)Not determined6125269523149588044Mouse
1301518Bbaa5_mB.burgdorferi-associated arthritis 5 (mouse)Not determined698483798145881170Mouse
11353842Bmiq4_mbody mass index QTL 4 (mouse)692584287146330736Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
1301686Trmq1_mT cell ratio modifier QTL 1 (mouse)Not determined6129330484149588044Mouse
1357555Tesq2_mtestis weight QTL 2 (mouse)Not determined696632912146535124Mouse
1301620Insq8_minsulin QTL 8 (mouse)Not determined6129534979149588044Mouse
12879916Shm5_msperm head morphology 5 (mouse)6132266532145601739Mouse
10053680Lith25_mlithogenic gene 25 (mouse)Not determined6128601582149588044Mouse
4141974Skmw14_mskeletal muscle weight 14 (mouse)Not determined6129330484149588044Mouse
4142416Egq11_mearly growth QTL 11 (mouse)Not determined96632912146535124Mouse
1301820Mop1_mmorphine preference 1 (mouse)Not determined6132578005146330736Mouse
1301027Hdlq12_mHDL QTL 12 (mouse)Not determined6128601582149588044Mouse
10412207Cypr5_mcytokine production 5 (mouse)Not determined6110815180144815323Mouse
1301152Athsq2_matherosclerosis susceptibility QTL 2 (mouse)Not determined6117059949149588044Mouse
13463481Mcvq14_mmean corpuscular volume QTL 14 (mouse)6111142448145142541Mouse
1301927Etohcta6_methanol conditioned taste aversion 6 (mouse)Not determined6115578005149578150Mouse
4141194Cyx_mcycloheximide tasting (mouse)Not determined115546805149549364Mouse
1558959Eamcd2_mexperimental autoimmune myocarditis 2 (mouse)Not determined6129953954149588044Mouse
4141889Qui_mquinine sensitivity, taste (mouse)Not determined115546805149549364Mouse
1301804Bulb2_mbulb size 2 (mouse)Not determined6120416806149588044Mouse

Markers in Region
AI854781  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386138,365,667 - 138,365,813UniSTSGRCm38
MGSCv376138,314,188 - 138,314,334UniSTSGRCm37
Celera6141,431,867 - 141,432,013UniSTS
Cytogenetic Map6G1UniSTS
cM Map670.0UniSTS
Whitehead/MRC_RH61387.17UniSTS
BB106490  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386138,364,579 - 138,364,724UniSTSGRCm38
MGSCv376138,313,100 - 138,313,245UniSTSGRCm37
Celera6141,430,779 - 141,430,924UniSTS
Cytogenetic Map6G1UniSTS
cM Map670.0UniSTS
Whitehead/MRC_RH61387.17UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001356305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001356306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001356307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_207222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_151448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_151449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_177275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_177276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_177277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_177278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_377405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_868844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC121968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC125215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC139755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC034128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC057086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000160050   ⟹   ENSMUSP00000124722
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6138,341,960 - 138,401,613 (-)Ensembl
GRCm38.p6 Ensembl6138,364,962 - 138,424,615 (-)Ensembl
Ensembl Acc Id: ENSMUST00000161450   ⟹   ENSMUSP00000124862
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6138,342,593 - 138,399,915 (-)Ensembl
GRCm38.p6 Ensembl6138,365,595 - 138,422,917 (-)Ensembl
Ensembl Acc Id: ENSMUST00000162185   ⟹   ENSMUSP00000124105
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6138,354,206 - 138,399,997 (-)Ensembl
GRCm38.p6 Ensembl6138,377,208 - 138,422,999 (-)Ensembl
Ensembl Acc Id: ENSMUST00000162772   ⟹   ENSMUSP00000125335
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6138,339,916 - 138,558,966 (-)Ensembl
GRCm38.p6 Ensembl6138,362,918 - 138,581,968 (-)Ensembl
Ensembl Acc Id: ENSMUST00000162932   ⟹   ENSMUSP00000124514
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6138,393,413 - 138,403,814 (-)Ensembl
GRCm38.p6 Ensembl6138,416,415 - 138,426,816 (-)Ensembl
Ensembl Acc Id: ENSMUST00000163024   ⟹   ENSMUSP00000125589
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6138,342,589 - 138,399,972 (-)Ensembl
GRCm38.p6 Ensembl6138,365,591 - 138,422,974 (-)Ensembl
Ensembl Acc Id: ENSMUST00000163065   ⟹   ENSMUSP00000124762
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6138,341,194 - 138,398,450 (-)Ensembl
GRCm38.p6 Ensembl6138,364,196 - 138,421,452 (-)Ensembl
Ensembl Acc Id: ENSMUST00000203435   ⟹   ENSMUSP00000145048
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6138,342,900 - 138,404,160 (-)Ensembl
GRCm38.p6 Ensembl6138,365,902 - 138,427,162 (-)Ensembl
RefSeq Acc Id: NM_001356305   ⟹   NP_001343234
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396138,339,916 - 138,399,535 (-)NCBI
GRCm386138,362,918 - 138,422,379 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001356306   ⟹   NP_001343235
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396138,339,916 - 138,399,886 (-)NCBI
GRCm386138,362,918 - 138,423,030 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001356307   ⟹   NP_001343236
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396138,339,916 - 138,398,387 (-)NCBI
GRCm386138,362,918 - 138,421,514 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001411497   ⟹   NP_001398426
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396138,339,916 - 138,403,743 (-)NCBI
RefSeq Acc Id: NM_001411498   ⟹   NP_001398427
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396138,339,916 - 138,393,757 (-)NCBI
RefSeq Acc Id: NM_001411499   ⟹   NP_001398428
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396138,339,916 - 138,399,886 (-)NCBI
RefSeq Acc Id: NM_001411500   ⟹   NP_001398429
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396138,339,916 - 138,399,886 (-)NCBI
RefSeq Acc Id: NM_001411501   ⟹   NP_001398430
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396138,339,916 - 138,401,598 (-)NCBI
RefSeq Acc Id: NM_001411502   ⟹   NP_001398431
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396138,339,916 - 138,400,135 (-)NCBI
RefSeq Acc Id: NM_001411503   ⟹   NP_001398432
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396138,339,916 - 138,400,553 (-)NCBI
RefSeq Acc Id: NM_001411504   ⟹   NP_001398433
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396138,339,916 - 138,403,743 (-)NCBI
RefSeq Acc Id: NM_207222   ⟹   NP_997105
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396138,339,916 - 138,559,119 (-)NCBI
GRCm386138,362,918 - 138,581,968 (-)NCBI
MGSCv376138,313,002 - 138,530,489 (-)RGD
Celera6141,430,681 - 141,644,348 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_151448
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396138,339,916 - 138,399,886 (-)NCBI
GRCm386138,362,918 - 138,423,030 (-)NCBI
Sequence:
RefSeq Acc Id: NR_151449
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396138,339,916 - 138,399,886 (-)NCBI
GRCm386138,362,918 - 138,423,030 (-)NCBI
Sequence:
RefSeq Acc Id: NR_177275
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396138,339,916 - 138,403,743 (-)NCBI
RefSeq Acc Id: NR_177276
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396138,339,916 - 138,400,553 (-)NCBI
RefSeq Acc Id: NR_177277
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396138,339,916 - 138,400,135 (-)NCBI
RefSeq Acc Id: NR_177278
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396138,339,916 - 138,399,886 (-)NCBI
RefSeq Acc Id: XM_006505343   ⟹   XP_006505406
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396138,352,555 - 138,399,188 (-)NCBI
GRCm386138,374,991 - 138,422,213 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030255087   ⟹   XP_030110947
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396138,339,916 - 138,559,204 (-)NCBI
GRCm386138,362,918 - 138,582,206 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036165743   ⟹   XP_036021636
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396138,339,916 - 138,399,324 (-)NCBI
Sequence:
RefSeq Acc Id: XR_377405
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396138,342,709 - 138,399,188 (-)NCBI
GRCm386138,365,959 - 138,422,215 (-)NCBI
Sequence:
RefSeq Acc Id: XR_868844
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396138,342,956 - 138,399,188 (-)NCBI
GRCm386138,365,959 - 138,422,213 (-)NCBI
Sequence:
RefSeq Acc Id: NP_997105   ⟸   NM_207222
- Peptide Label: isoform 1
- UniProtKB: Q8BZL8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006505406   ⟸   XM_006505343
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_030110947   ⟸   XM_030255087
- Peptide Label: isoform X2
- UniProtKB: Q8BZL8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001343235   ⟸   NM_001356306
- Peptide Label: isoform 1
- UniProtKB: Q8BZL8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001343234   ⟸   NM_001356305
- Peptide Label: isoform 1
- UniProtKB: Q8BZL8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001343236   ⟸   NM_001356307
- Peptide Label: isoform 2
- UniProtKB: E9PWI9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000145048   ⟸   ENSMUST00000203435
Ensembl Acc Id: ENSMUSP00000124762   ⟸   ENSMUST00000163065
Ensembl Acc Id: ENSMUSP00000125589   ⟸   ENSMUST00000163024
Ensembl Acc Id: ENSMUSP00000124722   ⟸   ENSMUST00000160050
Ensembl Acc Id: ENSMUSP00000125335   ⟸   ENSMUST00000162772
Ensembl Acc Id: ENSMUSP00000124514   ⟸   ENSMUST00000162932
Ensembl Acc Id: ENSMUSP00000124105   ⟸   ENSMUST00000162185
Ensembl Acc Id: ENSMUSP00000124862   ⟸   ENSMUST00000161450
RefSeq Acc Id: XP_036021636   ⟸   XM_036165743
- Peptide Label: isoform X1
RefSeq Acc Id: NP_001398433   ⟸   NM_001411504
- Peptide Label: isoform 1
- UniProtKB: Q8BZL8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001398426   ⟸   NM_001411497
- Peptide Label: isoform 1
- UniProtKB: Q8BZL8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001398430   ⟸   NM_001411501
- Peptide Label: isoform 1
- UniProtKB: Q8BZL8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001398432   ⟸   NM_001411503
- Peptide Label: isoform 1
- UniProtKB: Q8BZL8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001398431   ⟸   NM_001411502
- Peptide Label: isoform 1
- UniProtKB: Q8BZL8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001398429   ⟸   NM_001411500
- Peptide Label: isoform 1
- UniProtKB: Q8BZL8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001398428   ⟸   NM_001411499
- Peptide Label: isoform 1
- UniProtKB: Q8BZL8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001398427   ⟸   NM_001411498
- Peptide Label: isoform 1
- UniProtKB: Q8BZL8 (UniProtKB/Swiss-Prot)
Protein Domains
LIM zinc-binding

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BZL8-F1-model_v2 AlphaFold Q8BZL8 1-145 view protein structure

Promoters
RGD ID:6838803
Promoter ID:MM_KWN:48076
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:AK039284_A830011K09RIK,   UC009ENL.1,   UC009ENN.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366138,370,346 - 138,370,846 (+)MPROMDB
RGD ID:6891386
Promoter ID:EPDNEW_M9144
Type:multiple initiation site
Name:Lmo3_2
Description:Mus musculus LIM domain only 3 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M9145  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386138,422,536 - 138,422,596EPDNEW
RGD ID:6891388
Promoter ID:EPDNEW_M9145
Type:multiple initiation site
Name:Lmo3_1
Description:Mus musculus LIM domain only 3 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M9144  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386138,422,879 - 138,422,939EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:102810 AgrOrtholog
Ensembl Genes ENSMUSG00000030226 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000160050.2 UniProtKB/TrEMBL
  ENSMUST00000161450 ENTREZGENE
  ENSMUST00000161450.8 UniProtKB/Swiss-Prot
  ENSMUST00000162185.8 UniProtKB/TrEMBL
  ENSMUST00000162772 ENTREZGENE
  ENSMUST00000162772.8 UniProtKB/Swiss-Prot
  ENSMUST00000162932.2 UniProtKB/TrEMBL
  ENSMUST00000163024 ENTREZGENE
  ENSMUST00000163024.8 UniProtKB/Swiss-Prot
  ENSMUST00000163065 ENTREZGENE
  ENSMUST00000163065.8 UniProtKB/TrEMBL
  ENSMUST00000203435 ENTREZGENE
  ENSMUST00000203435.3 UniProtKB/Swiss-Prot
Gene3D-CATH Cysteine Rich Protein UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro LMO_RBTN_TF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_LIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:109593 UniProtKB/Swiss-Prot
MGD MGI:102810 ENTREZGENE
NCBI Gene Lmo3 ENTREZGENE
PANTHER LD11652P UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LIM DOMAIN ONLY PROTEIN 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam LIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Lmo3 PhenoGen
PROSITE LIM_DOMAIN_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LIM_DOMAIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART LIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt E0CXD7_MOUSE UniProtKB/TrEMBL
  E0CY33_MOUSE UniProtKB/TrEMBL
  E0CYK7_MOUSE UniProtKB/TrEMBL
  E9PWI9 ENTREZGENE, UniProtKB/TrEMBL
  LMO3_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q8K044_MOUSE UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-21 Lmo3  LIM domain only 3  Lmo3  LIM only 3  Symbol and/or name change 5135510 APPROVED
2024-08-21 Lmo3  LIM only 3  Lmo3  LIM domain only 3  Symbol and/or name change 5135510 APPROVED